96 |
0.004303 |
0.1596 |
stm4243 |
yjbN |
-11.74 |
0.363864 |
272 -- 280 |
155 -- 163 |
tRNA dihydrouridine(20/20a) synthase DusA |
|
_____________271______________________________281\n_____________|________________________________|\n5'-UUA...UUAAU___AC_________C____A_____CCU____GGCAG...GUU-3'\n______________GGG____UGUACGG_GAAG_UGAAA___GGGG\n______________|||____|||||:|_||||_|||||___:|||\n______________CCC____ACAUGUC_CUUC_ACUUU___UCCC\n3'-UUU...UCUGU___AUUU__________________U______AUCAG...UCA-5'\n_____________|________________________________|\n_____________164______________________________154\n |
58 -- 64 |
141 -- 147 |
-26.0653 kcal/mol |
8.12251 kcal/mol |
7.07058 kcal/mol |
271 281@LB@ | |@LB@5'-UUA...UUAAU AC C A CCU GGCAG...GUU-3'@LB@ GGG UGUACGG GAAG UGAAA GGGG@LB@ ||| |||||:| |||| ||||| :|||@LB@ CCC ACAUGUC CUUC ACUUU UCCC@LB@3'-UUU...UCUGU AUUU U AUCAG...UCA-5'@LB@ | |@LB@ 164 154@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -26.0653 kcal/mol@LB@Unfolding Energy - mRNA 8.12251 kcal/mol@LB@Unfolding Energy - sRNA 7.07058 kcal/mol@LB@@LB@Position - mRNA 272 -- 280@LB@Position - sRNA 155 -- 163@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 141 -- 147@LB@ |
123 |
0.006073 |
0.1758 |
stm4355 |
yjeS |
-17.69 |
0.042665 |
80 -- 140 |
31 -- 90 |
putative Fe-S protein |
|
_____________79______________________________141\n_____________|_______________________________|\n_______5'-CGUU______________C________________AGUGU...UUA-3'\n______________GUUGC___CAUGAC_ACACAACA_C_CAGCC\n______________:||||___||::||_||||||||_|_||:||\n______________UAACG___GUGUUG_UGUGUUGU_G_GUUGG\n3'-UUU...CUGGU_____UUU______U________A_U_____CAUUC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________30\n |
18 -- 24 |
71 -- 77 |
-27.2663 kcal/mol |
5.13395 kcal/mol |
8.62086 kcal/mol |
79 141@LB@ | |@LB@ 5'-CGUU C AGUGU...UUA-3'@LB@ GUUGC CAUGAC ACACAACA C CAGCC@LB@ :|||| ||::|| |||||||| | ||:||@LB@ UAACG GUGUUG UGUGUUGU G GUUGG@LB@3'-UUU...CUGGU UUU U A U CAUUC...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -27.2663 kcal/mol@LB@Unfolding Energy - mRNA 5.13395 kcal/mol@LB@Unfolding Energy - sRNA 8.62086 kcal/mol@LB@@LB@Position - mRNA 80 -- 140@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 71 -- 77@LB@ |
77 |
0.003608 |
0.1596 |
stm4473 |
yjgM |
-11.12 |
0.437983 |
252 -- 285 |
42 -- 82 |
GNAT family N-acetyltransferase |
|
_____________251________________286\n_____________|__________________|\n5'-AUU...CGCCG________CC___C____AUGCC...ACG-3'\n______________AAUCACUA___GC_GACA\n______________||||||||___:|_||||\n______________UUAGUGAU___UG_CUGU\n3'-UUU...UGUAA________ACC__U____CCCAU...UCA-5'\n_____________|__________________|\n_____________83_________________41\n |
240 -- 246 |
165 -- 171 |
-13.0222 kcal/mol |
3.39479 kcal/mol |
3.49149 kcal/mol |
251 286@LB@ | |@LB@5'-AUU...CGCCG CC C AUGCC...ACG-3'@LB@ AAUCACUA GC GACA@LB@ |||||||| :| ||||@LB@ UUAGUGAU UG CUGU@LB@3'-UUU...UGUAA ACC U CCCAU...UCA-5'@LB@ | |@LB@ 83 41@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -13.0222 kcal/mol@LB@Unfolding Energy - mRNA 3.39479 kcal/mol@LB@Unfolding Energy - sRNA 3.49149 kcal/mol@LB@@LB@Position - mRNA 252 -- 285@LB@Position - sRNA 42 -- 82@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 165 -- 171@LB@ |
48 |
0.001762 |
0.1291 |
stm4523 |
yjiW |
-20.55 |
0.014078 |
157 -- 299 |
40 -- 186 |
endoribonuclease SymE |
|
_____________156____________________________________________________________________________________________300\n_____________|______________________________________________________________________________________________|\n5'-GUG...AUUUU____AA___CCA__A__A_______CCAUUCU__________CG______UC__GAAGUCUCCC___________C______CUU_________UAUGC...AUU-3'\n______________AGGG__UAG___UC_UG_CUACCGU_______AUUGCAGAUC___UGCGA__CA__________CAACAA_AUAA_CGUCAC___ACCGUGAGU\n______________||||__|||___||_:|_|||||||_______||:|||||:|___|||:|__||__________||||||_|:||_|:||||___|||||:||:\n______________UCCC__AUC___AG_GC_GAUGGCA_______UAGCGUCUGG___ACGUU__GU__________GUUGUU_UGUU_GUAGUG___UGGCAUUCG\n3'-UUU...CUUUU______________A__________CCAGACU__________UUA_____U___________________G___________U___________GUUUU...UCA-5'\n_____________|______________________________________________________________________________________________|\n_____________187____________________________________________________________________________________________39\n |
222 -- 228 |
95 -- 101 |
-59.8396 kcal/mol |
18.2388 kcal/mol |
27.0823 kcal/mol |
156 300@LB@ | |@LB@5'-GUG...AUUUU AA CCA A A CCAUUCU CG UC GAAGUCUCCC C CUU UAUGC...AUU-3'@LB@ AGGG UAG UC UG CUACCGU AUUGCAGAUC UGCGA CA CAACAA AUAA CGUCAC ACCGUGAGU@LB@ |||| ||| || :| ||||||| ||:|||||:| |||:| || |||||| |:|| |:|||| |||||:||:@LB@ UCCC AUC AG GC GAUGGCA UAGCGUCUGG ACGUU GU GUUGUU UGUU GUAGUG UGGCAUUCG@LB@3'-UUU...CUUUU A CCAGACU UUA U G U GUUUU...UCA-5'@LB@ | |@LB@ 187 39@LB@@LB@@LB@Energy -20.55 kcal/mol@LB@Hybridization Energy -59.8396 kcal/mol@LB@Unfolding Energy - mRNA 18.2388 kcal/mol@LB@Unfolding Energy - sRNA 27.0823 kcal/mol@LB@@LB@Position - mRNA 157 -- 299@LB@Position - sRNA 40 -- 186@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 95 -- 101@LB@ |
144 |
0.00736 |
0.182 |
stm4559 |
yjjG |
-11.80 |
0.356804 |
189 -- 218 |
128 -- 159 |
putative haloacid dehalogenase-like hydrolase |
|
_____________188_________________________________219\n_____________|___________________________________|\n5'-UUG...AUAAA_G_____A____U__________________CU__AUUUU...UCA-3'\n______________A_AGGCA_GGUG_AAUG_AU__GAAGUGGGA__GG\n______________|_||:||_|||:_||||_|:__||||||::|__||\n______________U_UCUGU_CCAU_UUAC_UG__CUUCACUUU__CC\n3'-UUU...AUACC_G_____C_________A__UC_________UU__CAUCA...UCA-5'\n_____________|___________________________________|\n_____________160_________________________________127\n |
208 -- 214 |
132 -- 138 |
-24.694 kcal/mol |
5.33554 kcal/mol |
7.83417 kcal/mol |
188 219@LB@ | |@LB@5'-UUG...AUAAA G A U CU AUUUU...UCA-3'@LB@ A AGGCA GGUG AAUG AU GAAGUGGGA GG@LB@ | ||:|| |||: |||| |: ||||||::| ||@LB@ U UCUGU CCAU UUAC UG CUUCACUUU CC@LB@3'-UUU...AUACC G C A UC UU CAUCA...UCA-5'@LB@ | |@LB@ 160 127@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -24.694 kcal/mol@LB@Unfolding Energy - mRNA 5.33554 kcal/mol@LB@Unfolding Energy - sRNA 7.83417 kcal/mol@LB@@LB@Position - mRNA 189 -- 218@LB@Position - sRNA 128 -- 159@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 132 -- 138@LB@ |
105 |
0.005236 |
0.1728 |
stm4566 |
yjjI |
-12.28 |
0.305832 |
96 -- 137 |
40 -- 77 |
YjjI family glycine radical enzyme |
|
_____________95________________138\n_____________|_________________|\n5'-ACA...UUUUC____________U____CCGGC...UGG-3'\n______________UACAAUAGCGCA_CGUC\n______________:||||:|:|:||_|:||\n______________GUGUUGUUGUGU_GUAG\n3'-UUU...CGUUU____________U____UGUUG...UCA-5'\n_____________|_________________|\n_____________78________________39\n |
167 -- 173 |
74 -- 80 |
-18.3997 kcal/mol |
3.44142 kcal/mol |
3.92987 kcal/mol |
95 138@LB@ | |@LB@5'-ACA...UUUUC U CCGGC...UGG-3'@LB@ UACAAUAGCGCA CGUC@LB@ :||||:|:|:|| |:||@LB@ GUGUUGUUGUGU GUAG@LB@3'-UUU...CGUUU U UGUUG...UCA-5'@LB@ | |@LB@ 78 39@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -18.3997 kcal/mol@LB@Unfolding Energy - mRNA 3.44142 kcal/mol@LB@Unfolding Energy - sRNA 3.92987 kcal/mol@LB@@LB@Position - mRNA 96 -- 137@LB@Position - sRNA 40 -- 77@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 74 -- 80@LB@ |
72 |
0.003348 |
0.1596 |
stm0849 |
yliB |
-19.23 |
0.023527 |
175 -- 193 |
139 -- 162 |
glutathione ABC transporter substrate-binding protein GsiB |
|
_____________174______________________194\n_____________|________________________|\n5'-GUU...AUUCA____________UU__________GAACA...CGG-3'\n______________GACAGGCAGGGU_______CAGGA\n______________|||||:||||||_______|||||\n______________CUGUCUGUCCCA_______GUCCU\n3'-UUU...GAUAC____________UUUACAU_____UCACU...UCA-5'\n_____________|________________________|\n_____________163______________________138\n |
180 -- 186 |
151 -- 157 |
-27.2027 kcal/mol |
3.52422 kcal/mol |
3.69132 kcal/mol |
174 194@LB@ | |@LB@5'-GUU...AUUCA UU GAACA...CGG-3'@LB@ GACAGGCAGGGU CAGGA@LB@ |||||:|||||| |||||@LB@ CUGUCUGUCCCA GUCCU@LB@3'-UUU...GAUAC UUUACAU UCACU...UCA-5'@LB@ | |@LB@ 163 138@LB@@LB@@LB@Energy -19.23 kcal/mol@LB@Hybridization Energy -27.2027 kcal/mol@LB@Unfolding Energy - mRNA 3.52422 kcal/mol@LB@Unfolding Energy - sRNA 3.69132 kcal/mol@LB@@LB@Position - mRNA 175 -- 193@LB@Position - sRNA 139 -- 162@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 151 -- 157@LB@ |
145 |
0.007435 |
0.1826 |
stm1822 |
yoaB |
-15.17 |
0.110813 |
243 -- 269 |
162 -- 185 |
similar to E. coli orf hypothetical protein (AAC74879.1); Blastp hit to AAC74879.1 (130 aa) 92% identity in aa 17 - 130 |
|
_____________242______________________270\n_____________|________________________|\n5'-GUG...AUUUG___AG_____UAU_U_________AAGGC...CCG-3'\n______________CAC___GGAU___G_CAGGGUAGA\n______________|||___|||:___|_|||||||:|\n______________GUG___CCUG___C_GUCCCAUUU\n3'-UUU...AAUUA___AUA____U___U_________ACAUG...UCA-5'\n_____________|________________________|\n_____________186______________________161\n |
106 -- 112 |
148 -- 154 |
-19.875 kcal/mol |
5.9246 kcal/mol |
4.20228 kcal/mol |
242 270@LB@ | |@LB@5'-GUG...AUUUG AG UAU U AAGGC...CCG-3'@LB@ CAC GGAU G CAGGGUAGA@LB@ ||| |||: | |||||||:|@LB@ GUG CCUG C GUCCCAUUU@LB@3'-UUU...AAUUA AUA U U ACAUG...UCA-5'@LB@ | |@LB@ 186 161@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -19.875 kcal/mol@LB@Unfolding Energy - mRNA 5.9246 kcal/mol@LB@Unfolding Energy - sRNA 4.20228 kcal/mol@LB@@LB@Position - mRNA 243 -- 269@LB@Position - sRNA 162 -- 185@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 148 -- 154@LB@ |
118 |
0.005761 |
0.1738 |
stm1840 |
yobG |
-17.14 |
0.052758 |
234 -- 267 |
153 -- 188 |
PhoP regulon feedback inhibition protein MgrB |
|
_____________233____________________________________________________________________________________268\n_____________|______________________________________________________________________________________|\n5'-ACA...AGAGU___________AUUUCGAU____C_U_____GC________GGUA______U___U_____UGU________GUGUU_________GUGCG...AAU-3'\n______________GGAGUGAAAAA________GGGU_G_UCUCG__AUCGUGGU_______GUA_GCC_GUUGC___GGGCGCAG_____UAAUAUCAU\n______________|:|||||||||________||||_|_|||||__|:||||||_______|:|_:||_:||||___:::|:||:_____:||:||||:\n______________CUUCACUUUUU________CCCA_C_AGAGC__UGGCACCA_______CGU_UGG_UAACG___UUUGUGUU_____GUUGUAGUG\n3'-UUU...AUGUC_______________________U_______GA________GACUUAG___C___U________________GUUGU_________UUGGC...UCA-5'\n_____________|______________________________________________________________________________________|\n_____________189____________________________________________________________________________________152\n |
274 -- 280 |
67 -- 73 |
-62.0847 kcal/mol |
28.922 kcal/mol |
22.0106 kcal/mol |
233 268@LB@ | |@LB@5'-ACA...AGAGU AUUUCGAU C U GC GGUA U U UGU GUGUU GUGCG...AAU-3'@LB@ GGAGUGAAAAA GGGU G UCUCG AUCGUGGU GUA GCC GUUGC GGGCGCAG UAAUAUCAU@LB@ |:||||||||| |||| | ||||| |:|||||| |:| :|| :|||| :::|:||: :||:||||:@LB@ CUUCACUUUUU CCCA C AGAGC UGGCACCA CGU UGG UAACG UUUGUGUU GUUGUAGUG@LB@3'-UUU...AUGUC U GA GACUUAG C U GUUGU UUGGC...UCA-5'@LB@ | |@LB@ 189 152@LB@@LB@@LB@Energy -17.14 kcal/mol@LB@Hybridization Energy -62.0847 kcal/mol@LB@Unfolding Energy - mRNA 28.922 kcal/mol@LB@Unfolding Energy - sRNA 22.0106 kcal/mol@LB@@LB@Position - mRNA 234 -- 267@LB@Position - sRNA 153 -- 188@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 67 -- 73@LB@ |
29 |
0.0007392 |
0.08814 |
stm3096 |
yqgE |
-16.45 |
0.068552 |
198 -- 251 |
37 -- 84 |
DUF179 domain-containing protein |
|
_____________197___________252\n_____________|_____________|\n5'-UGG...UAUAU_____________CAGGA...GCG-3'\n______________UUGCGAGCACAAC\n______________||||:|:||||||\n______________AACGUUUGUGUUG\n3'-UUU...UGGUU_____________UUGUG...UCA-5'\n_____________|_____________|\n_____________85____________36\n |
284 -- 290 |
80 -- 86 |
-18.5161 kcal/mol |
2.82597 kcal/mol |
3.5889 kcal/mol |
197 252@LB@ | |@LB@5'-UGG...UAUAU CAGGA...GCG-3'@LB@ UUGCGAGCACAAC@LB@ ||||:|:||||||@LB@ AACGUUUGUGUUG@LB@3'-UUU...UGGUU UUGUG...UCA-5'@LB@ | |@LB@ 85 36@LB@@LB@@LB@Energy -16.45 kcal/mol@LB@Hybridization Energy -18.5161 kcal/mol@LB@Unfolding Energy - mRNA 2.82597 kcal/mol@LB@Unfolding Energy - sRNA 3.5889 kcal/mol@LB@@LB@Position - mRNA 198 -- 251@LB@Position - sRNA 37 -- 84@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 80 -- 86@LB@ |