71 |
0.003339 |
0.1596 |
stm0105 |
yabI |
-14.10 |
0.163814 |
151 -- 168 |
141 -- 162 |
similar to E. coli orf hypothetical protein (AAC73176.1); Blastp hit to AAC73176.1 (254 aa) 89% identity in aa 1 - 253 |
|
_____________150____________________169\n_____________|______________________|\n5'-UGA...ACGAA__G___________________AAUCC...GGU-3'\n______________GG_GGACGGGGUAA____GCAG\n______________|:_:|||:||||||____:|||\n______________CU_UCUGUCCCAUU____UGUC\n3'-UUU...GAUAC__G___________UACA____CUUCA...UCA-5'\n_____________|______________________|\n_____________163____________________140\n |
158 -- 164 |
149 -- 155 |
-23.8591 kcal/mol |
5.26969 kcal/mol |
3.68511 kcal/mol |
150 169@LB@ | |@LB@5'-UGA...ACGAA G AAUCC...GGU-3'@LB@ GG GGACGGGGUAA GCAG@LB@ |: :|||:|||||| :|||@LB@ CU UCUGUCCCAUU UGUC@LB@3'-UUU...GAUAC G UACA CUUCA...UCA-5'@LB@ | |@LB@ 163 140@LB@@LB@@LB@Energy -14.10 kcal/mol@LB@Hybridization Energy -23.8591 kcal/mol@LB@Unfolding Energy - mRNA 5.26969 kcal/mol@LB@Unfolding Energy - sRNA 3.68511 kcal/mol@LB@@LB@Position - mRNA 151 -- 168@LB@Position - sRNA 141 -- 162@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 149 -- 155@LB@ |
91 |
0.004202 |
0.1596 |
stm0387 |
yaiI |
-16.26 |
0.073758 |
5 -- 45 |
23 -- 58 |
similar to E. coli orf hypothetical protein (AAC73490.1); Blastp hit to AAC73490.1 (192 aa) 89% identity in aa 41 - 191 |
|
_____________4____________________________________________46\n_____________|____________________________________________|\n_______5'-GUCC_______AUAGCCUU______AUU________G___A_______CGAUU...CCA-3'\n______________GCCAAGA________GCCCAU____AC_CGCA__CC_AUAAAAC\n______________|||||:|________||||||____||_||||__||_|||||||\n______________CGGUUUU________CGGGUA____UG_GCGU__GG_UAUUUUG\n3'-UUU...GCAUU_____________________GUCU__U____AA__C_______AAAAG...UCA-5'\n_____________|____________________________________________|\n_____________59___________________________________________22\n |
5 -- 11 |
52 -- 58 |
-32.2087 kcal/mol |
3.21436 kcal/mol |
17.1718 kcal/mol |
4 46@LB@ | |@LB@ 5'-GUCC AUAGCCUU AUU G A CGAUU...CCA-3'@LB@ GCCAAGA GCCCAU AC CGCA CC AUAAAAC@LB@ |||||:| |||||| || |||| || |||||||@LB@ CGGUUUU CGGGUA UG GCGU GG UAUUUUG@LB@3'-UUU...GCAUU GUCU U AA C AAAAG...UCA-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -32.2087 kcal/mol@LB@Unfolding Energy - mRNA 3.21436 kcal/mol@LB@Unfolding Energy - sRNA 17.1718 kcal/mol@LB@@LB@Position - mRNA 5 -- 45@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 52 -- 58@LB@ |
31 |
0.0007673 |
0.08814 |
stm0403 |
yajB |
-17.88 |
0.039643 |
23 -- 70 |
41 -- 90 |
ACP phosphodiesterase |
|
_____________22_____________71\n_____________|______________|\n5'-CCC...GGGUA_______AU_____AUUCG...AUU-3'\n______________GUGGGCA__CAGGG\n______________:|||:||__|||||\n______________UACCUGU__GUCCC\n3'-UUU...AGUGA_______CU_____AUUUA...UCA-5'\n_____________|______________|\n_____________91_____________40\n |
57 -- 63 |
159 -- 165 |
-19.6891 kcal/mol |
4.4153 kcal/mol |
3.13232 kcal/mol |
22 71@LB@ | |@LB@5'-CCC...GGGUA AU AUUCG...AUU-3'@LB@ GUGGGCA CAGGG@LB@ :|||:|| |||||@LB@ UACCUGU GUCCC@LB@3'-UUU...AGUGA CU AUUUA...UCA-5'@LB@ | |@LB@ 91 40@LB@@LB@@LB@Energy -17.88 kcal/mol@LB@Hybridization Energy -19.6891 kcal/mol@LB@Unfolding Energy - mRNA 4.4153 kcal/mol@LB@Unfolding Energy - sRNA 3.13232 kcal/mol@LB@@LB@Position - mRNA 23 -- 70@LB@Position - sRNA 41 -- 90@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 159 -- 165@LB@ |
169 |
0.009276 |
0.1945 |
stm0495 |
ybaK |
-13.73 |
0.186840 |
16 -- 30 |
44 -- 58 |
aminoacyl-tRNA deacylase |
|
_____________15_________________31\n_____________|__________________|\n5'-AAA...CAUUC____CU__G_________CGAAU...UGG-3'\n______________ACAC__AC_AUCACGAUC\n______________||||__||_|||||:|:|\n______________UGUG__UG_UAGUGUUGG\n3'-UUU...GUUGU____U_____________CAUUC...UCA-5'\n_____________|__________________|\n_____________59_________________43\n |
264 -- 270 |
63 -- 69 |
-14.6876 kcal/mol |
0.727125 kcal/mol |
6.44907 kcal/mol |
15 31@LB@ | |@LB@5'-AAA...CAUUC CU G CGAAU...UGG-3'@LB@ ACAC AC AUCACGAUC@LB@ |||| || |||||:|:|@LB@ UGUG UG UAGUGUUGG@LB@3'-UUU...GUUGU U CAUUC...UCA-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -14.6876 kcal/mol@LB@Unfolding Energy - mRNA 0.727125 kcal/mol@LB@Unfolding Energy - sRNA 6.44907 kcal/mol@LB@@LB@Position - mRNA 16 -- 30@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 63 -- 69@LB@ |
112 |
0.005549 |
0.1728 |
stm0602 |
ybdH |
-14.01 |
0.169356 |
159 -- 193 |
39 -- 79 |
oxidoreductase |
|
_____________158_____________194\n_____________|_______________|\n5'-GCG...CCCUA_G_____________GAACC...AGC-3'\n______________A_GACAACACAACAU\n______________|_:||||||||||||\n______________U_UUGUUGUGUUGUA\n3'-UUU...GUUUG_G_____________GUGUU...UCA-5'\n_____________|_______________|\n_____________80______________38\n |
196 -- 202 |
70 -- 76 |
-18.8338 kcal/mol |
1.20586 kcal/mol |
3.77892 kcal/mol |
158 194@LB@ | |@LB@5'-GCG...CCCUA G GAACC...AGC-3'@LB@ A GACAACACAACAU@LB@ | :||||||||||||@LB@ U UUGUUGUGUUGUA@LB@3'-UUU...GUUUG G GUGUU...UCA-5'@LB@ | |@LB@ 80 38@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.8338 kcal/mol@LB@Unfolding Energy - mRNA 1.20586 kcal/mol@LB@Unfolding Energy - sRNA 3.77892 kcal/mol@LB@@LB@Position - mRNA 159 -- 193@LB@Position - sRNA 39 -- 79@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 70 -- 76@LB@ |
99 |
0.004942 |
0.1728 |
stm0604 |
ybdM |
-18.77 |
0.028138 |
203 -- 249 |
36 -- 81 |
similar to E. coli orf hypothetical protein (AAC73702.1); Blastp hit to AAC73702.1 (209 aa) 77% identity in aa 5 - 209 |
|
_____________202___________________250\n_____________|_____________________|\n5'-AAA...CUUAU______C______________AAAUA...AUA-3'\n______________GCAACA_CGAC_UCACAACCG\n______________:|||||_|:||_|||||||||\n______________UGUUGU_GUUG_AGUGUUGGC\n3'-UUU...UGUGU___________U_________AUUCG...UCA-5'\n_____________|_____________________|\n_____________82____________________35\n |
216 -- 222 |
62 -- 68 |
-25.0091 kcal/mol |
1.37283 kcal/mol |
7.72388 kcal/mol |
202 250@LB@ | |@LB@5'-AAA...CUUAU C AAAUA...AUA-3'@LB@ GCAACA CGAC UCACAACCG@LB@ :||||| |:|| |||||||||@LB@ UGUUGU GUUG AGUGUUGGC@LB@3'-UUU...UGUGU U AUUCG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.77 kcal/mol@LB@Hybridization Energy -25.0091 kcal/mol@LB@Unfolding Energy - mRNA 1.37283 kcal/mol@LB@Unfolding Energy - sRNA 7.72388 kcal/mol@LB@@LB@Position - mRNA 203 -- 249@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 62 -- 68@LB@ |
191 |
0.01055 |
0.1967 |
stm0634 |
ybeF |
-18.83 |
0.027435 |
210 -- 262 |
35 -- 82 |
putative LysR family transcriptional regulator |
|
_____________209____________________________________________________________263\n_____________|______________________________________________________________|\n5'-GCU...CGUGA____UA_____C_G____AAAG_______________UCAACA____________AAC____AAUUU...UGU-3'\n______________GUGA__AUAAU_A_GCAG____ACAACCG___GCCGA______CCUA_CAGGACA___CGCA\n______________|::|__|:||:_|_:||:____|||||||___|||:|______||:|_|||:|||___||||\n______________CGUU__UGUUG_U_UGUU____UGUUGGC___CGGUU______GGGU_GUCUUGU___GCGU\n3'-UUU...GUUAA____UG_____U_G____GUAG_______AUU_____UUC_______A______________AAGGC...UCA-5'\n_____________|______________________________________________________________|\n_____________83_____________________________________________________________34\n |
227 -- 233 |
62 -- 68 |
-42.1612 kcal/mol |
9.04443 kcal/mol |
22.5095 kcal/mol |
209 263@LB@ | |@LB@5'-GCU...CGUGA UA C G AAAG UCAACA AAC AAUUU...UGU-3'@LB@ GUGA AUAAU A GCAG ACAACCG GCCGA CCUA CAGGACA CGCA@LB@ |::| |:||: | :||: ||||||| |||:| ||:| |||:||| ||||@LB@ CGUU UGUUG U UGUU UGUUGGC CGGUU GGGU GUCUUGU GCGU@LB@3'-UUU...GUUAA UG U G GUAG AUU UUC A AAGGC...UCA-5'@LB@ | |@LB@ 83 34@LB@@LB@@LB@Energy -18.83 kcal/mol@LB@Hybridization Energy -42.1612 kcal/mol@LB@Unfolding Energy - mRNA 9.04443 kcal/mol@LB@Unfolding Energy - sRNA 22.5095 kcal/mol@LB@@LB@Position - mRNA 210 -- 262@LB@Position - sRNA 35 -- 82@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 62 -- 68@LB@ |
52 |
0.001934 |
0.1324 |
stm0653 |
ybeL |
-17.18 |
0.051878 |
262 -- 299 |
155 -- 188 |
similar to E. coli putative alpha helical protein (AAC73744.1); Blastp hit to AAC73744.1 (160 aa) 91% identity in aa 1 - 160 |
|
_____________261________________________300\n_____________|__________________________|\n5'-AUU...GCGCG________G____G_____G______C-3'\n______________ACAUUGAU_CGCU_GUGGA_CAGGCG\n______________|||||:||_|:||_:||||_|||:|:\n______________UGUAAUUA_GUGA_UACCU_GUCUGU\n3'-UUU...CACGA__________________________CCCAU...UCA-5'\n_____________|__________________________|\n_____________189________________________154\n |
275 -- 281 |
170 -- 176 |
-23.9532 kcal/mol |
9.91713 kcal/mol |
4.10825 kcal/mol |
261 300@LB@ | |@LB@5'-AUU...GCGCG G G G C-3'@LB@ ACAUUGAU CGCU GUGGA CAGGCG@LB@ |||||:|| |:|| :|||| |||:|:@LB@ UGUAAUUA GUGA UACCU GUCUGU@LB@3'-UUU...CACGA CCCAU...UCA-5'@LB@ | |@LB@ 189 154@LB@@LB@@LB@Energy -17.18 kcal/mol@LB@Hybridization Energy -23.9532 kcal/mol@LB@Unfolding Energy - mRNA 9.91713 kcal/mol@LB@Unfolding Energy - sRNA 4.10825 kcal/mol@LB@@LB@Position - mRNA 262 -- 299@LB@Position - sRNA 155 -- 188@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 170 -- 176@LB@ |
102 |
0.005164 |
0.1728 |
stm0668 |
ybeY |
-18.23 |
0.034693 |
146 -- 193 |
37 -- 81 |
rRNA maturation RNase YbeY |
|
_____________145__________________________________________194\n_____________|____________________________________________|\n5'-UCC...AAAAC____________UUG____________G_______GU_______AGGAG...CGC-3'\n______________GCAAA_GCGGCG___GCGGCA____GA_CGUAAGC__GAAGCCC\n______________|||||_:|::|:___:|::||____:|_|||||||__:||||||\n______________CGUUU_UGUUGU___UGUUGU____UU_GCAUUCG__UUUCGGG\n3'-UUU...GUUAA_____G______UG_______AGUG__G_______GU_______UAGUC...UCA-5'\n_____________|____________________________________________|\n_____________82___________________________________________36\n |
178 -- 184 |
48 -- 54 |
-38.2699 kcal/mol |
15.4401 kcal/mol |
16.4278 kcal/mol |
145 194@LB@ | |@LB@5'-UCC...AAAAC UUG G GU AGGAG...CGC-3'@LB@ GCAAA GCGGCG GCGGCA GA CGUAAGC GAAGCCC@LB@ ||||| :|::|: :|::|| :| ||||||| :||||||@LB@ CGUUU UGUUGU UGUUGU UU GCAUUCG UUUCGGG@LB@3'-UUU...GUUAA G UG AGUG G GU UAGUC...UCA-5'@LB@ | |@LB@ 82 36@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -38.2699 kcal/mol@LB@Unfolding Energy - mRNA 15.4401 kcal/mol@LB@Unfolding Energy - sRNA 16.4278 kcal/mol@LB@@LB@Position - mRNA 146 -- 193@LB@Position - sRNA 37 -- 81@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 48 -- 54@LB@ |
104 |
0.005232 |
0.1728 |
stm0744 |
ybgC |
-16.85 |
0.058772 |
132 -- 175 |
54 -- 90 |
tol-pal system-associated acyl-CoA thioesterase |
|
_____________131_____________________________176\n_____________|_______________________________|\n5'-CUU...ACAAG____U____________UCUUGA________GGCGG...AAA-3'\n______________GCGA_AUACAACGGCAU______GGCAUUAC\n______________||:|_|:|||||::||:______::|||:||\n______________CGUU_UGUGUUGUUGUG______UUGUAGUG\n3'-UUU...GUUAA_______________________________UUGGC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________53\n |
156 -- 162 |
67 -- 73 |
-23.8418 kcal/mol |
6.2547 kcal/mol |
5.68203 kcal/mol |
131 176@LB@ | |@LB@5'-CUU...ACAAG U UCUUGA GGCGG...AAA-3'@LB@ GCGA AUACAACGGCAU GGCAUUAC@LB@ ||:| |:|||||::||: ::|||:||@LB@ CGUU UGUGUUGUUGUG UUGUAGUG@LB@3'-UUU...GUUAA UUGGC...UCA-5'@LB@ | |@LB@ 91 53@LB@@LB@@LB@Energy -16.85 kcal/mol@LB@Hybridization Energy -23.8418 kcal/mol@LB@Unfolding Energy - mRNA 6.2547 kcal/mol@LB@Unfolding Energy - sRNA 5.68203 kcal/mol@LB@@LB@Position - mRNA 132 -- 175@LB@Position - sRNA 54 -- 90@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 67 -- 73@LB@ |