| 1 |
0 |
0 |
stm2982 |
gcvA |
-98.53 |
0.000000 |
1 -- 73 |
1 -- 73 |
transcriptional regulator GcvA |
|
______________1________________________________________________________________________74\n______________|________________________________________________________________________|\n___________5'-_________________________________________________________________________GCCGC...CGC-3'\n______________ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA\n3'-UUU...UGUGU_________________________________________________________________________-5'\n_____________|________________________________________________________________________|\n_____________74_______________________________________________________________________1\n |
67 -- 73 |
1 -- 7 |
-142.883 kcal/mol |
17.2949 kcal/mol |
26.5914 kcal/mol |
1 74@LB@ | |@LB@ 5'- GCCGC...CGC-3'@LB@ ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA@LB@3'-UUU...UGUGU -5'@LB@ | |@LB@ 74 1@LB@@LB@@LB@Energy -98.53 kcal/mol@LB@Hybridization Energy -142.883 kcal/mol@LB@Unfolding Energy - mRNA 17.2949 kcal/mol@LB@Unfolding Energy - sRNA 26.5914 kcal/mol@LB@@LB@Position - mRNA 1 -- 73@LB@Position - sRNA 1 -- 73@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
2.663e-05 |
0.04123 |
stm2355 |
argT |
-17.69 |
0.042680 |
144 -- 202 |
34 -- 91 |
histidine ABC transporter substrate-binding protein HisJ |
|
_____________143____________________203\n_____________|______________________|\n5'-UUA...AAGUC_________________C____AAAAC...AUA-3'\n______________UGCAAACAC_ACAACGC_ACGU\n______________|||||||||_|||||:|_||:|\n______________ACGUUUGUG_UGUUGUG_UGUA\n3'-UUU...GGUUA_________U_______U____GUGUU...UCA-5'\n_____________|______________________|\n_____________92_____________________33\n |
153 -- 159 |
75 -- 81 |
-25.653 kcal/mol |
2.98604 kcal/mol |
4.21448 kcal/mol |
143 203@LB@ | |@LB@5'-UUA...AAGUC C AAAAC...AUA-3'@LB@ UGCAAACAC ACAACGC ACGU@LB@ ||||||||| |||||:| ||:|@LB@ ACGUUUGUG UGUUGUG UGUA@LB@3'-UUU...GGUUA U U GUGUU...UCA-5'@LB@ | |@LB@ 92 33@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -25.653 kcal/mol@LB@Unfolding Energy - mRNA 2.98604 kcal/mol@LB@Unfolding Energy - sRNA 4.21448 kcal/mol@LB@@LB@Position - mRNA 144 -- 202@LB@Position - sRNA 34 -- 91@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 3 |
3.698e-05 |
0.04123 |
stm4398 |
cycA |
-21.36 |
0.010235 |
127 -- 178 |
38 -- 82 |
D-serine/D-alanine/glycine transporter |
|
_____________126_________________________________________________179\n_____________|___________________________________________________|\n5'-CGU...GCCCG___AAC__________________________________CAU_____A__AGGUA...UUG-3'\n______________CAC_____ACAGACAGG_______UACAGGAA__GAAAAA___GGUAG_UC\n______________|||_____|||||||||_______||||||||__||||||___|||||_||\n______________GUG_____UGUCUGUCC_______AUGUCCUU__CUUUUU___CCAUC_AG\n3'-UUU...AAUUA___AUACC_________CAUUUAC________CA______C__________AGCGA...UCA-5'\n_____________|___________________________________________________|\n_____________83__________________________________________________37\n |
187 -- 193 |
138 -- 144 |
-35.3631 kcal/mol |
4.42279 kcal/mol |
10.6404 kcal/mol |
126 179@LB@ | |@LB@5'-CGU...GCCCG AAC CAU A AGGUA...UUG-3'@LB@ CAC ACAGACAGG UACAGGAA GAAAAA GGUAG UC@LB@ ||| ||||||||| |||||||| |||||| ||||| ||@LB@ GUG UGUCUGUCC AUGUCCUU CUUUUU CCAUC AG@LB@3'-UUU...AAUUA AUACC CAUUUAC CA C AGCGA...UCA-5'@LB@ | |@LB@ 83 37@LB@@LB@@LB@Energy -21.36 kcal/mol@LB@Hybridization Energy -35.3631 kcal/mol@LB@Unfolding Energy - mRNA 4.42279 kcal/mol@LB@Unfolding Energy - sRNA 10.6404 kcal/mol@LB@@LB@Position - mRNA 127 -- 178@LB@Position - sRNA 38 -- 82@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 138 -- 144@LB@ |
| 4 |
5.758e-05 |
0.04123 |
stm3564 |
livK |
-17.90 |
0.039430 |
157 -- 215 |
37 -- 90 |
leucine ABC transporter subunit substrate-binding protein LivK |
|
_____________156______________________216\n_____________|________________________|\n5'-UUU...GCAAA_____A__________________AUGGG...CGA-3'\n______________AAACA_AAC_AUAUAACAUCACGA\n______________|||||_|||_|:|:||||||||:|\n______________UUUGU_UUG_UGUGUUGUAGUGUU\n3'-UUU...UAACG_____G___U______________GGCAU...UCA-5'\n_____________|________________________|\n_____________91_______________________36\n |
178 -- 184 |
65 -- 71 |
-21.8749 kcal/mol |
0.694231 kcal/mol |
6.38817 kcal/mol |
156 216@LB@ | |@LB@5'-UUU...GCAAA A AUGGG...CGA-3'@LB@ AAACA AAC AUAUAACAUCACGA@LB@ ||||| ||| |:|:||||||||:|@LB@ UUUGU UUG UGUGUUGUAGUGUU@LB@3'-UUU...UAACG G U GGCAU...UCA-5'@LB@ | |@LB@ 91 36@LB@@LB@@LB@Energy -17.90 kcal/mol@LB@Hybridization Energy -21.8749 kcal/mol@LB@Unfolding Energy - mRNA 0.694231 kcal/mol@LB@Unfolding Energy - sRNA 6.38817 kcal/mol@LB@@LB@Position - mRNA 157 -- 215@LB@Position - sRNA 37 -- 90@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 5 |
6.363e-05 |
0.04123 |
stm0399 |
brnQ |
-24.27 |
0.003272 |
169 -- 224 |
36 -- 81 |
branched-chain amino acid transport system II carrier protein |
|
_____________168_______________________________________________________________225\n_____________|_________________________________________________________________|\n5'-AAC...UUUAA___U_________U________C_____G_A_____A__UUAU_A________UUAAAAU_____GAUAU...UCG-3'\n______________UGU___UACAACA_CAC__CAU_CACAG_C_GUAAG_CU____G_CCCAUCAG_______CGCGC\n______________||:___:||||||_|||__|||_||||:_|_|||||_|:____|_||||||||_______|:|||\n______________ACG___GUGUUGU_GUG__GUA_GUGUU_G_CAUUC_GG____C_GGGUAGUC_______GUGCG\n3'-UUU...GGUUA___UUU_______U___UU_________G__________UUUU__________UU__________UAAGG...UCA-5'\n_____________|_________________________________________________________________|\n_____________82________________________________________________________________35\n |
205 -- 211 |
44 -- 50 |
-45.9704 kcal/mol |
7.09165 kcal/mol |
22.503 kcal/mol |
168 225@LB@ | |@LB@5'-AAC...UUUAA U U C G A A UUAU A UUAAAAU GAUAU...UCG-3'@LB@ UGU UACAACA CAC CAU CACAG C GUAAG CU G CCCAUCAG CGCGC@LB@ ||: :|||||| ||| ||| ||||: | ||||| |: | |||||||| |:|||@LB@ ACG GUGUUGU GUG GUA GUGUU G CAUUC GG C GGGUAGUC GUGCG@LB@3'-UUU...GGUUA UUU U UU G UUUU UU UAAGG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -24.27 kcal/mol@LB@Hybridization Energy -45.9704 kcal/mol@LB@Unfolding Energy - mRNA 7.09165 kcal/mol@LB@Unfolding Energy - sRNA 22.503 kcal/mol@LB@@LB@Position - mRNA 169 -- 224@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 6 |
7.515e-05 |
0.04123 |
stm0665 |
gltI |
-17.87 |
0.039793 |
157 -- 199 |
35 -- 81 |
glutamate/aspartate transporter |
|
_____________156__________________200\n_____________|____________________|\n5'-CGA...UGCAG____UA______U_______GCUAU...CUG-3'\n______________GCAA__ACAACA_CACAAUA\n______________||||__||||||_|||||:|\n______________CGUU__UGUUGU_GUGUUGU\n3'-UUU...GUUAA____UG______U_______AGUGU...UCA-5'\n_____________|____________________|\n_____________82___________________34\n |
170 -- 176 |
71 -- 77 |
-19.9204 kcal/mol |
1.29616 kcal/mol |
3.80671 kcal/mol |
156 200@LB@ | |@LB@5'-CGA...UGCAG UA U GCUAU...CUG-3'@LB@ GCAA ACAACA CACAAUA@LB@ |||| |||||| |||||:|@LB@ CGUU UGUUGU GUGUUGU@LB@3'-UUU...GUUAA UG U AGUGU...UCA-5'@LB@ | |@LB@ 82 34@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -19.9204 kcal/mol@LB@Unfolding Energy - mRNA 1.29616 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 157 -- 199@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 7 |
8.283e-05 |
0.04123 |
stm1953 |
yedO |
-23.64 |
0.004188 |
172 -- 228 |
31 -- 88 |
D-cysteine desulfhydrase |
|
_____________171__________________________________________________________229\n_____________|____________________________________________________________|\n5'-UAA...AAAAA___________________________GA___U___U____ACUA_____CUU_______UUCCC...GUG-3'\n______________GAACAC_AC__CACAACGUU___ACCG__GGC_CAA__GCC____CAUCA___AACGCGC\n______________:|||||_||__||||||:|:___||||__:||_|||__|||____|||||___|||:|||\n______________UUUGUG_UG__GUGUUGUAG___UGGC__UCG_GUU__CGG____GUAGU___UUGUGCG\n3'-UUU...UAACG______U__UU_________UGU____AU_______UU____________C_________UAAGG...UCA-5'\n_____________|____________________________________________________________|\n_____________89___________________________________________________________30\n |
218 -- 224 |
36 -- 42 |
-46.0183 kcal/mol |
9.00749 kcal/mol |
22.3196 kcal/mol |
171 229@LB@ | |@LB@5'-UAA...AAAAA GA U U ACUA CUU UUCCC...GUG-3'@LB@ GAACAC AC CACAACGUU ACCG GGC CAA GCC CAUCA AACGCGC@LB@ :||||| || ||||||:|: |||| :|| ||| ||| ||||| |||:|||@LB@ UUUGUG UG GUGUUGUAG UGGC UCG GUU CGG GUAGU UUGUGCG@LB@3'-UUU...UAACG U UU UGU AU UU C UAAGG...UCA-5'@LB@ | |@LB@ 89 30@LB@@LB@@LB@Energy -23.64 kcal/mol@LB@Hybridization Energy -46.0183 kcal/mol@LB@Unfolding Energy - mRNA 9.00749 kcal/mol@LB@Unfolding Energy - sRNA 22.3196 kcal/mol@LB@@LB@Position - mRNA 172 -- 228@LB@Position - sRNA 31 -- 88@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 8 |
9.263e-05 |
0.04123 |
stm0369 |
prpC |
-29.42 |
0.000431 |
202 -- 269 |
31 -- 91 |
2-methylcitrate synthase |
|
_____________201______________________________________________________________270\n_____________|________________________________________________________________|\n5'-AAC...CAAUA__A_____________C_U___AA_____A__CAU____UU______AAAAA_____U______UUUCC...GUA-3'\n______________UG_CAGACACGACGAU_C_GCA__ACAAC_CG___GUCA__AAGCCU_____AUCGG__CGCGC\n______________||_||:||||:||:|:_|_:||__|||||_||___|:||__|||||:_____|||:|__|:|||\n______________AC_GUUUGUGUUGUUG_G_UGU__UGUUG_GC___CGGU__UUCGGG_____UAGUC__GUGCG\n3'-UUU...GGUUA________________U_U___AG________AUU____U_________________UU_____UAAGG...UCA-5'\n_____________|________________________________________________________________|\n_____________92_______________________________________________________________30\n |
211 -- 217 |
77 -- 83 |
-51.7305 kcal/mol |
8.34164 kcal/mol |
22.503 kcal/mol |
201 270@LB@ | |@LB@5'-AAC...CAAUA A C U AA A CAU UU AAAAA U UUUCC...GUA-3'@LB@ UG CAGACACGACGAU C GCA ACAAC CG GUCA AAGCCU AUCGG CGCGC@LB@ || ||:||||:||:|: | :|| ||||| || |:|| |||||: |||:| |:|||@LB@ AC GUUUGUGUUGUUG G UGU UGUUG GC CGGU UUCGGG UAGUC GUGCG@LB@3'-UUU...GGUUA U U AG AUU U UU UAAGG...UCA-5'@LB@ | |@LB@ 92 30@LB@@LB@@LB@Energy -29.42 kcal/mol@LB@Hybridization Energy -51.7305 kcal/mol@LB@Unfolding Energy - mRNA 8.34164 kcal/mol@LB@Unfolding Energy - sRNA 22.503 kcal/mol@LB@@LB@Position - mRNA 202 -- 269@LB@Position - sRNA 31 -- 91@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 9 |
0.0001316 |
0.05206 |
stm1221 |
cobB |
-19.79 |
0.018892 |
28 -- 73 |
51 -- 101 |
NAD-dependent protein deacylase |
|
_____________27__________________74\n_____________|___________________|\n5'-UCG...UUACG___________________UGGCG...UGG-3'\n______________GCA___AUAACAACGCAAC\n______________|||___|:||||||:||||\n______________CGU___UGUUGUUGUGUUG\n3'-UUU...GUUAA___UUG_____________UAGUG...UCA-5'\n_____________|___________________|\n_____________102_________________50\n |
57 -- 63 |
72 -- 78 |
-19.3364 kcal/mol |
2.6852 kcal/mol |
3.80362 kcal/mol |
27 74@LB@ | |@LB@5'-UCG...UUACG UGGCG...UGG-3'@LB@ GCA AUAACAACGCAAC@LB@ ||| |:||||||:||||@LB@ CGU UGUUGUUGUGUUG@LB@3'-UUU...GUUAA UUG UAGUG...UCA-5'@LB@ | |@LB@ 102 50@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -19.3364 kcal/mol@LB@Unfolding Energy - mRNA 2.6852 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 28 -- 73@LB@Position - sRNA 51 -- 101@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 10 |
0.0001468 |
0.05229 |
stm0680 |
asnB |
-17.15 |
0.052408 |
158 -- 224 |
32 -- 90 |
asparagine synthetase B |
|
_____________157________________________225\n_____________|__________________________|\n5'-CAU...GUCAA_________AAAAGU___________GAUUA...CGG-3'\n______________GCAAAUACA______ACGACGCAACA\n______________|||||:|||______||:||:|||||\n______________CGUUUGUGU______UGUUGUGUUGU\n3'-UUU...GUUAA__________________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________31\n |
177 -- 183 |
71 -- 77 |
-23.872 kcal/mol |
3.8402 kcal/mol |
3.80671 kcal/mol |
157 225@LB@ | |@LB@5'-CAU...GUCAA AAAAGU GAUUA...CGG-3'@LB@ GCAAAUACA ACGACGCAACA@LB@ |||||:||| ||:||:|||||@LB@ CGUUUGUGU UGUUGUGUUGU@LB@3'-UUU...GUUAA AGUGU...UCA-5'@LB@ | |@LB@ 91 31@LB@@LB@@LB@Energy -17.15 kcal/mol@LB@Hybridization Energy -23.872 kcal/mol@LB@Unfolding Energy - mRNA 3.8402 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 158 -- 224@LB@Position - sRNA 32 -- 90@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 71 -- 77@LB@ |
