| 78 |
0.006706 |
0.2822 |
b3738 |
atpB |
-10.93 |
0.077303 |
188 -- 216 |
28 -- 54 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________187_____________________________217\n_____________|_______________________________|\n5'-CAU...CAAAG_____AAG___UC__________________UGACG...ACC-3'\n______________GGUAA___GCA__AUGGCUU__CAGAAAAUA\n______________||:||___|||__|||||::__|||||||||\n______________CCGUU___CGU__UACCGGG__GUCUUUUAU\n3'-UUU...AGUCA_____A______________UU_________UUUAG...UUG-5'\n_____________|_______________________________|\n_____________55______________________________27\n |
201 -- 207 |
39 -- 45 |
-24.7477 kcal/mol |
4.83623 kcal/mol |
8.98285 kcal/mol |
187 217@LB@ | |@LB@5'-CAU...CAAAG AAG UC UGACG...ACC-3'@LB@ GGUAA GCA AUGGCUU CAGAAAAUA@LB@ ||:|| ||| |||||:: |||||||||@LB@ CCGUU CGU UACCGGG GUCUUUUAU@LB@3'-UUU...AGUCA A UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -24.7477 kcal/mol@LB@Unfolding Energy - mRNA 4.83623 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 188 -- 216@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 135 |
0.01531 |
0.3774 |
b3224 |
nanT |
-10.34 |
0.103537 |
56 -- 77 |
28 -- 54 |
sialic acid transporter |
|
_____________55__________________________78\n_____________|___________________________|\n5'-CGC...CUGAA_____________________UU____CAAGA...GUU-3'\n______________GGC___GC__UGGCCCAGCAG__GAUG\n______________|||___||__|||||||:|||__:||:\n______________CCG___CG__ACCGGGUUGUC__UUAU\n3'-UUU...AGUCA___UUA__UU___________UU____UUUAG...UUG-5'\n_____________|___________________________|\n_____________55__________________________27\n |
63 -- 69 |
36 -- 42 |
-28.0045 kcal/mol |
8.68418 kcal/mol |
8.98285 kcal/mol |
55 78@LB@ | |@LB@5'-CGC...CUGAA UU CAAGA...GUU-3'@LB@ GGC GC UGGCCCAGCAG GAUG@LB@ ||| || |||||||:||| :||:@LB@ CCG CG ACCGGGUUGUC UUAU@LB@3'-UUU...AGUCA UUA UU UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -28.0045 kcal/mol@LB@Unfolding Energy - mRNA 8.68418 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 56 -- 77@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 150 |
0.01784 |
0.3828 |
b2412 |
zipA |
-13.80 |
0.016156 |
169 -- 198 |
28 -- 57 |
FtsZ stabilizer |
|
_____________168____________________________199\n_____________|______________________________|\n5'-CAG...GCCGU________G___UUA_AA____________UAAUG...CUU-3'\n______________GGUGGCAA_GUG___G__CAACAGAGAAUA\n______________:|||||||_|::___|__|||||||:||||\n______________UCACCGUU_CGU___C__GUUGUCUUUUAU\n3'-UUU...UUUAG________A___UAC_GG____________UUUAG...UUG-5'\n_____________|______________________________|\n_____________58_____________________________27\n |
189 -- 195 |
31 -- 37 |
-29.7049 kcal/mol |
6.01867 kcal/mol |
9.88595 kcal/mol |
168 199@LB@ | |@LB@5'-CAG...GCCGU G UUA AA UAAUG...CUU-3'@LB@ GGUGGCAA GUG G CAACAGAGAAUA@LB@ :||||||| |:: | |||||||:||||@LB@ UCACCGUU CGU C GUUGUCUUUUAU@LB@3'-UUU...UUUAG A UAC GG UUUAG...UUG-5'@LB@ | |@LB@ 58 27@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -29.7049 kcal/mol@LB@Unfolding Energy - mRNA 6.01867 kcal/mol@LB@Unfolding Energy - sRNA 9.88595 kcal/mol@LB@@LB@Position - mRNA 169 -- 198@LB@Position - sRNA 28 -- 57@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 185 |
0.02287 |
0.4143 |
b3460 |
livJ |
-12.49 |
0.033972 |
245 -- 276 |
28 -- 54 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________244______________________________277\n_____________|________________________________|\n5'-AAU...GCGCU____UUCA___AU_______U___________UUAAA...CAA-3'\n______________GGCA____GCA__AUGGCUC_GGCAGAAGAUA\n______________||||____|||__|||||:|_::|||||:|||\n______________CCGU____CGU__UACCGGG_UUGUCUUUUAU\n3'-UUU...AGUCA____UA__________________________UUUAG...UUG-5'\n_____________|________________________________|\n_____________55_______________________________27\n |
258 -- 264 |
39 -- 45 |
-29.3573 kcal/mol |
7.88401 kcal/mol |
8.98285 kcal/mol |
244 277@LB@ | |@LB@5'-AAU...GCGCU UUCA AU U UUAAA...CAA-3'@LB@ GGCA GCA AUGGCUC GGCAGAAGAUA@LB@ |||| ||| |||||:| ::|||||:|||@LB@ CCGU CGU UACCGGG UUGUCUUUUAU@LB@3'-UUU...AGUCA UA UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -29.3573 kcal/mol@LB@Unfolding Energy - mRNA 7.88401 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 245 -- 276@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 97 |
0.009098 |
0.3118 |
b3221 |
yhcH |
-21.73 |
0.000051 |
38 -- 71 |
30 -- 66 |
DUF386 family protein cupin superfamily |
|
_____________37____________________________________72\n_____________|_____________________________________|\n5'-AUC...GUGCG___U_________________U_______________GUAUC...AAG-3'\n______________UGG__GGUCGGUGGCA__GCG_UGGUCUGGCAGAAGG\n______________|||__::||:||||||__||:_|||:|:::|||||::\n______________ACC__UUAGUCACCGU__CGU_ACCGGGUUGUCUUUU\n3'-UUU...AUACA___UU___________UA___U_______________AUUUU...UUG-5'\n_____________|_____________________________________|\n_____________67____________________________________29\n |
57 -- 63 |
38 -- 44 |
-43.4799 kcal/mol |
10.7586 kcal/mol |
10.9916 kcal/mol |
37 72@LB@ | |@LB@5'-AUC...GUGCG U U GUAUC...AAG-3'@LB@ UGG GGUCGGUGGCA GCG UGGUCUGGCAGAAGG@LB@ ||| ::||:|||||| ||: |||:|:::|||||::@LB@ ACC UUAGUCACCGU CGU ACCGGGUUGUCUUUU@LB@3'-UUU...AUACA UU UA U AUUUU...UUG-5'@LB@ | |@LB@ 67 29@LB@@LB@@LB@Energy -21.73 kcal/mol@LB@Hybridization Energy -43.4799 kcal/mol@LB@Unfolding Energy - mRNA 10.7586 kcal/mol@LB@Unfolding Energy - sRNA 10.9916 kcal/mol@LB@@LB@Position - mRNA 38 -- 71@LB@Position - sRNA 30 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 130 |
0.01417 |
0.3654 |
b3188 |
sfsB |
-12.77 |
0.029182 |
125 -- 158 |
30 -- 65 |
malPQ operon transcriptional activator |
|
_____________124__________________________________159\n_____________|____________________________________|\n5'-CGG...CAAUA__CC______GA___UA___________________AGUGU...UGA-3'\n______________GG___AUCAG__GUA__GUGAU_GCUCGACAGAAGA\n______________||___|||||__|:|__|::||_||:|:||||||:|\n______________CC___UAGUC__CGU__CGUUA_CGGGUUGUCUUUU\n3'-UUU...UACAA__UUU_____AC___UA_____C_____________AUUUU...UUG-5'\n_____________|____________________________________|\n_____________66___________________________________29\n |
152 -- 158 |
30 -- 36 |
-32.1455 kcal/mol |
8.39464 kcal/mol |
10.9856 kcal/mol |
124 159@LB@ | |@LB@5'-CGG...CAAUA CC GA UA AGUGU...UGA-3'@LB@ GG AUCAG GUA GUGAU GCUCGACAGAAGA@LB@ || ||||| |:| |::|| ||:|:||||||:|@LB@ CC UAGUC CGU CGUUA CGGGUUGUCUUUU@LB@3'-UUU...UACAA UUU AC UA C AUUUU...UUG-5'@LB@ | |@LB@ 66 29@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -32.1455 kcal/mol@LB@Unfolding Energy - mRNA 8.39464 kcal/mol@LB@Unfolding Energy - sRNA 10.9856 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 30 -- 65@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 158 |
0.01805 |
0.3828 |
b0159 |
mtn |
-12.15 |
0.040782 |
203 -- 232 |
30 -- 64 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________202_________________________________233\n_____________|___________________________________|\n5'-GAU...UCUAU______________U____U____G__________AGAAG...UCU-3'\n______________GAAAAUC___GGCA___CA_UGGU_CAAUGGAAGA\n______________|||||||___||||___||_|||:_|||::|||:|\n______________CUUUUAG___CCGU___GU_ACCG_GUUGUCUUUU\n3'-UUU...ACAAC_______UCA____UAC__U____G__________AUUUU...UUG-5'\n_____________|___________________________________|\n_____________65__________________________________29\n |
203 -- 209 |
58 -- 64 |
-29.7028 kcal/mol |
6.58654 kcal/mol |
10.9617 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...UCUAU U U G AGAAG...UCU-3'@LB@ GAAAAUC GGCA CA UGGU CAAUGGAAGA@LB@ ||||||| |||| || |||: |||::|||:|@LB@ CUUUUAG CCGU GU ACCG GUUGUCUUUU@LB@3'-UUU...ACAAC UCA UAC U G AUUUU...UUG-5'@LB@ | |@LB@ 65 29@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -29.7028 kcal/mol@LB@Unfolding Energy - mRNA 6.58654 kcal/mol@LB@Unfolding Energy - sRNA 10.9617 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 30 -- 64@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 7 |
0.0002249 |
0.1081 |
b4032 |
malG |
-16.06 |
0.003987 |
187 -- 221 |
31 -- 65 |
maltose transporter subunit |
|
_____________186_________________________________222\n_____________|___________________________________|\n5'-CGU...AUUAA_______AACAAAAAUG_____________C____UCGCA...UGG-3'\n______________GGGAGAU__________GCAAUGGUCCAAC_GAAA\n______________||:|:||__________|||||||:|||||_||||\n______________CCUUUUA__________CGUUACCGGGUUG_CUUU\n3'-UUU...UACAA_______GUCACCGUUA_____________U____UAUUU...UUG-5'\n_____________|___________________________________|\n_____________66__________________________________30\n |
210 -- 216 |
36 -- 42 |
-33.4232 kcal/mol |
6.39587 kcal/mol |
10.9697 kcal/mol |
186 222@LB@ | |@LB@5'-CGU...AUUAA AACAAAAAUG C UCGCA...UGG-3'@LB@ GGGAGAU GCAAUGGUCCAAC GAAA@LB@ ||:|:|| |||||||:||||| ||||@LB@ CCUUUUA CGUUACCGGGUUG CUUU@LB@3'-UUU...UACAA GUCACCGUUA U UAUUU...UUG-5'@LB@ | |@LB@ 66 30@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -33.4232 kcal/mol@LB@Unfolding Energy - mRNA 6.39587 kcal/mol@LB@Unfolding Energy - sRNA 10.9697 kcal/mol@LB@@LB@Position - mRNA 187 -- 221@LB@Position - sRNA 31 -- 65@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 11 |
0.000438 |
0.1262 |
b0467 |
priC |
-14.72 |
0.009297 |
1 -- 37 |
32 -- 65 |
primosomal replication protein N'' |
|
______________1____________________________________38\n______________|____________________________________|\n___________5'-______GAACG_____A___CCA___CG_________UAAAC...GUU-3'\n______________GGGGAA_____GGCAA_GCA___GGC__CCAGCAGGA\n______________||::||_____|||||_|||___|||__|||:|||:|\n______________CCUUUU_____CCGUU_CGU___CCG__GGUUGUCUU\n3'-UUU...UACAA______AGUCA_____A___UA_______________UUAUU...UUG-5'\n_____________|_____________________________________|\n_____________66____________________________________31\n |
30 -- 36 |
33 -- 39 |
-34.0772 kcal/mol |
8.3902 kcal/mol |
10.9649 kcal/mol |
1 38@LB@ | |@LB@ 5'- GAACG A CCA CG UAAAC...GUU-3'@LB@ GGGGAA GGCAA GCA GGC CCAGCAGGA@LB@ ||::|| ||||| ||| ||| |||:|||:|@LB@ CCUUUU CCGUU CGU CCG GGUUGUCUU@LB@3'-UUU...UACAA AGUCA A UA UUAUU...UUG-5'@LB@ | |@LB@ 66 31@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -34.0772 kcal/mol@LB@Unfolding Energy - mRNA 8.3902 kcal/mol@LB@Unfolding Energy - sRNA 10.9649 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 32 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 169 |
0.02007 |
0.3993 |
b1680 |
sufS |
-8.85 |
0.205059 |
78 -- 94 |
33 -- 48 |
cysteine desulfurase stimulated by SufE; selenocysteine lyase PLP-dependent |
|
_____________77________________95\n_____________|_________________|\n5'-AAA...AAUCA____GAU__________UGAUC...CGC-3'\n______________GCAG___GCCCAGCAGA\n______________|||:___|||||:||||\n______________CGUU___CGGGUUGUCU\n3'-UUU...CGUUA____AC___________UUUAU...UUG-5'\n_____________|_________________|\n_____________49________________32\n |
85 -- 91 |
36 -- 42 |
-22.7432 kcal/mol |
5.30025 kcal/mol |
8.59426 kcal/mol |
77 95@LB@ | |@LB@5'-AAA...AAUCA GAU UGAUC...CGC-3'@LB@ GCAG GCCCAGCAGA@LB@ |||: |||||:||||@LB@ CGUU CGGGUUGUCU@LB@3'-UUU...CGUUA AC UUUAU...UUG-5'@LB@ | |@LB@ 49 32@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -22.7432 kcal/mol@LB@Unfolding Energy - mRNA 5.30025 kcal/mol@LB@Unfolding Energy - sRNA 8.59426 kcal/mol@LB@@LB@Position - mRNA 78 -- 94@LB@Position - sRNA 33 -- 48@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 36 -- 42@LB@ |
