| 81 |
0.006985 |
0.2822 |
b0333 |
prpC |
-14.20 |
0.012743 |
251 -- 274 |
6 -- 28 |
2-methylcitrate synthase |
|
_____________250______________________275\n_____________|________________________|\n5'-ACU...CCGAA_____________CUUUCU_____UCCGG...GCA-3'\n______________AAAAUCUGUGGCA______GGCGU\n______________||||||||||:||______|||:|\n______________UUUUAGACACUGU______CCGUA\n3'-UUU...UUUUA_____________UAUUU______UAUUG-5'\n_____________|________________________|\n_____________29_______________________5\n |
257 -- 263 |
16 -- 22 |
-23.1913 kcal/mol |
4.0983 kcal/mol |
4.89176 kcal/mol |
250 275@LB@ | |@LB@5'-ACU...CCGAA CUUUCU UCCGG...GCA-3'@LB@ AAAAUCUGUGGCA GGCGU@LB@ ||||||||||:|| |||:|@LB@ UUUUAGACACUGU CCGUA@LB@3'-UUU...UUUUA UAUUU UAUUG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -23.1913 kcal/mol@LB@Unfolding Energy - mRNA 4.0983 kcal/mol@LB@Unfolding Energy - sRNA 4.89176 kcal/mol@LB@@LB@Position - mRNA 251 -- 274@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 112 |
0.0105 |
0.3154 |
b2136 |
yohD |
-14.01 |
0.014269 |
227 -- 295 |
6 -- 72 |
DedA family inner membrane protein |
|
_____________226_____________________________________________________________________296\n_____________|_______________________________________________________________________|\n5'-GAU...UCACA_____GUUAUGCCG__C____________A____________________C_____UUUGCUG________UGCGG-3'\n______________AUAUG_________CG_UGGUGAU_CGGU_GCCUGGCGGAAGGUGAAA_C_GUGAC_______GGAGGCGU\n______________|||||_________|:_|||::||_|::|_|||:::|:|||::|:|||_|_|||||_______::||||:|\n______________UAUAC_________GU_ACCGUUA_GUUA_CGGGUUGUCUUUUAUUUU_G_CACUG_______UUUCCGUA\n3'-UUU...AAAAA_____AACCUUUUA__C_______C____C__________________A_A_____UUA____________UAUUG-5'\n_____________|_______________________________________________________________________|\n_____________73______________________________________________________________________5\n |
289 -- 295 |
6 -- 12 |
-51.7055 kcal/mol |
25.533 kcal/mol |
12.1614 kcal/mol |
226 296@LB@ | |@LB@5'-GAU...UCACA GUUAUGCCG C A C UUUGCUG UGCGG-3'@LB@ AUAUG CG UGGUGAU CGGU GCCUGGCGGAAGGUGAAA C GUGAC GGAGGCGU@LB@ ||||| |: |||::|| |::| |||:::|:|||::|:||| | ||||| ::||||:|@LB@ UAUAC GU ACCGUUA GUUA CGGGUUGUCUUUUAUUUU G CACUG UUUCCGUA@LB@3'-UUU...AAAAA AACCUUUUA C C C A A UUA UAUUG-5'@LB@ | |@LB@ 73 5@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -51.7055 kcal/mol@LB@Unfolding Energy - mRNA 25.533 kcal/mol@LB@Unfolding Energy - sRNA 12.1614 kcal/mol@LB@@LB@Position - mRNA 227 -- 295@LB@Position - sRNA 6 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 144 |
0.01658 |
0.3828 |
b3731 |
atpC |
-9.12 |
0.181998 |
70 -- 89 |
6 -- 25 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________69___________________90\n_____________|____________________|\n5'-UCC...ACACC___C_____UU_________CAUGG...UGG-3'\n______________AUC_GUGGC__UAAAGGCAU\n______________|||_|||:|__|||||||||\n______________UAG_CACUG__AUUUCCGUA\n3'-UUU...UAUUU___A_____UU_________UAUUG-5'\n_____________|____________________|\n_____________26___________________5\n |
83 -- 89 |
6 -- 12 |
-21.8685 kcal/mol |
8.00712 kcal/mol |
4.73944 kcal/mol |
69 90@LB@ | |@LB@5'-UCC...ACACC C UU CAUGG...UGG-3'@LB@ AUC GUGGC UAAAGGCAU@LB@ ||| |||:| |||||||||@LB@ UAG CACUG AUUUCCGUA@LB@3'-UUU...UAUUU A UU UAUUG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -21.8685 kcal/mol@LB@Unfolding Energy - mRNA 8.00712 kcal/mol@LB@Unfolding Energy - sRNA 4.73944 kcal/mol@LB@@LB@Position - mRNA 70 -- 89@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 192 |
0.02397 |
0.4199 |
b2465 |
tktB |
-14.96 |
0.008038 |
72 -- 123 |
6 -- 68 |
transketolase 2 thiamine triphosphate-binding |
|
_____________71__________________________________________________________________124\n_____________|___________________________________________________________________|\n5'-AGU...GUUCC_______GCAC_____________________GG_________ACU_____________________UCGUC...CUG-3'\n______________GUUGGGA____AAUCAG____GAUGCGAUGGC____UAGAAAA____GUCUG________AAGGCAU\n______________|||||:|____||||||____:||||:|||||____:||||||____:||||________|||||||\n______________CAACCUU____UUAGUC____UUACGUUACCG____GUCUUUU____UAGAC________UUCCGUA\n3'-UUU...AUAUA_________________ACCG___________GGUU_______AUUU_____ACUGUUAU_______UAUUG-5'\n_____________|___________________________________________________________________|\n_____________69__________________________________________________________________5\n |
117 -- 123 |
6 -- 12 |
-46.2591 kcal/mol |
19.141 kcal/mol |
12.1601 kcal/mol |
71 124@LB@ | |@LB@5'-AGU...GUUCC GCAC GG ACU UCGUC...CUG-3'@LB@ GUUGGGA AAUCAG GAUGCGAUGGC UAGAAAA GUCUG AAGGCAU@LB@ |||||:| |||||| :||||:||||| :|||||| :|||| |||||||@LB@ CAACCUU UUAGUC UUACGUUACCG GUCUUUU UAGAC UUCCGUA@LB@3'-UUU...AUAUA ACCG GGUU AUUU ACUGUUAU UAUUG-5'@LB@ | |@LB@ 69 5@LB@@LB@@LB@Energy -14.96 kcal/mol@LB@Hybridization Energy -46.2591 kcal/mol@LB@Unfolding Energy - mRNA 19.141 kcal/mol@LB@Unfolding Energy - sRNA 12.1601 kcal/mol@LB@@LB@Position - mRNA 72 -- 123@LB@Position - sRNA 6 -- 68@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 16 |
0.0007379 |
0.1438 |
b3838 |
tatB |
-12.16 |
0.040760 |
131 -- 190 |
7 -- 68 |
TatABCE protein translocation system subunit |
|
_____________130___________________________________________________________________191\n_____________|_____________________________________________________________________|\n5'-UCG...AAGCA_GC___UAC_______GAA_____________AA_________CGC______GCC__________A___GGUGU...CGG-3'\n______________G__GGA___GAAUCAG___CA_______GGCU__AACAGAAGA___GAAG_C____ACGAUAAAG_GCA\n______________|__|||___:||||||___||_______|||:__|||||||:|___:||:_|____||:||||||_|||\n______________C__CCU___UUUAGUC___GU_______CCGG__UUGUCUUUU___UUUU_G____UGUUAUUUC_CGU\n3'-UUU...AUAUA_AA_____________ACC__UACGUUA____G__________A______A_ACAC_____________AUAUUG-5'\n_____________|_____________________________________________________________________|\n_____________69____________________________________________________________________6\n |
180 -- 186 |
10 -- 16 |
-35.021 kcal/mol |
10.7079 kcal/mol |
12.1575 kcal/mol |
130 191@LB@ | |@LB@5'-UCG...AAGCA GC UAC GAA AA CGC GCC A GGUGU...CGG-3'@LB@ G GGA GAAUCAG CA GGCU AACAGAAGA GAAG C ACGAUAAAG GCA@LB@ | ||| :|||||| || |||: |||||||:| :||: | ||:|||||| |||@LB@ C CCU UUUAGUC GU CCGG UUGUCUUUU UUUU G UGUUAUUUC CGU@LB@3'-UUU...AUAUA AA ACC UACGUUA G A A ACAC AUAUUG-5'@LB@ | |@LB@ 69 6@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -35.021 kcal/mol@LB@Unfolding Energy - mRNA 10.7079 kcal/mol@LB@Unfolding Energy - sRNA 12.1575 kcal/mol@LB@@LB@Position - mRNA 131 -- 190@LB@Position - sRNA 7 -- 68@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 50 |
0.003719 |
0.237 |
b3705 |
yidC |
-9.36 |
0.163545 |
61 -- 100 |
7 -- 65 |
membrane protein insertase |
|
_____________60__________________________________________________________101\n_____________|___________________________________________________________|\n5'-CGC...GCUAC____UU____A____U____CA_____________________________________GUUGG...CCC-3'\n______________GGAA_____G_GGCA_UGCG__GGUUU___GGA___________GUGAUA__AAAGGCA\n______________||||_____|_||||_|||:__||:::___:||___________||||:|__|||||||\n______________CCUU_____C_CCGU_ACGU__CCGGG___UCU___________CACUGU__UUUCCGU\n3'-UUU...UACAA____UUAGU_A____U____UA_____UUG___UUUAUUUUAGA______UA_______AUAUUG-5'\n_____________|___________________________________________________________|\n_____________66__________________________________________________________6\n |
94 -- 100 |
7 -- 13 |
-30.9326 kcal/mol |
9.41756 kcal/mol |
12.1538 kcal/mol |
60 101@LB@ | |@LB@5'-CGC...GCUAC UU A U CA GUUGG...CCC-3'@LB@ GGAA G GGCA UGCG GGUUU GGA GUGAUA AAAGGCA@LB@ |||| | |||| |||: ||::: :|| ||||:| |||||||@LB@ CCUU C CCGU ACGU CCGGG UCU CACUGU UUUCCGU@LB@3'-UUU...UACAA UUAGU A U UA UUG UUUAUUUUAGA UA AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -30.9326 kcal/mol@LB@Unfolding Energy - mRNA 9.41756 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 61 -- 100@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 63 |
0.004757 |
0.2539 |
b1342 |
ydaN |
-13.10 |
0.024145 |
140 -- 198 |
7 -- 70 |
putative Zn(II) transporter |
|
_____________139_______________________________________________________________199\n_____________|_________________________________________________________________|\n5'-CGU...AUGAG______CGU__________CA_____A____A___UAC_______UGCGU_______________CUGUG...AUG-3'\n______________AUGUUG___AA_CAG_GGC_____GA_GGCU_GAC___AAAAUAA______UGAUGAUGGAGGCA\n______________||||||___||_|||_|||_____:|_|||:_:||___|||||||______|||::||::|||||\n______________UACAAC___UU_GUC_CCG_____UU_CCGG_UUG___UUUUAUU______ACUGUUAUUUCCGU\n3'-UUU...AAAUA______CUU__A___A___UUACG__A____G___UC________UUAGAC______________AUAUUG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________6\n |
192 -- 198 |
7 -- 13 |
-39.9747 kcal/mol |
14.7113 kcal/mol |
12.1606 kcal/mol |
139 199@LB@ | |@LB@5'-CGU...AUGAG CGU CA A A UAC UGCGU CUGUG...AUG-3'@LB@ AUGUUG AA CAG GGC GA GGCU GAC AAAAUAA UGAUGAUGGAGGCA@LB@ |||||| || ||| ||| :| |||: :|| ||||||| |||::||::|||||@LB@ UACAAC UU GUC CCG UU CCGG UUG UUUUAUU ACUGUUAUUUCCGU@LB@3'-UUU...AAAUA CUU A A UUACG A G UC UUAGAC AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -13.10 kcal/mol@LB@Hybridization Energy -39.9747 kcal/mol@LB@Unfolding Energy - mRNA 14.7113 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 140 -- 198@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 70 |
0.005852 |
0.2791 |
b3524 |
yhjG |
-5.99 |
0.576071 |
198 -- 212 |
7 -- 18 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________197_____________213\n_____________|_______________|\n5'-UUG...AGCGA_______GCA_____GGCAA...GAC-3'\n______________ACGAUGA___AGGCA\n______________||:||:|___|||||\n______________UGUUAUU___UCCGU\n3'-UUU...GACAC_______________AUAUUG-5'\n_____________|_______________|\n_____________19______________6\n |
198 -- 204 |
12 -- 18 |
-10.9915 kcal/mol |
1.73561 kcal/mol |
3.26755 kcal/mol |
197 213@LB@ | |@LB@5'-UUG...AGCGA GCA GGCAA...GAC-3'@LB@ ACGAUGA AGGCA@LB@ ||:||:| |||||@LB@ UGUUAUU UCCGU@LB@3'-UUU...GACAC AUAUUG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -10.9915 kcal/mol@LB@Unfolding Energy - mRNA 1.73561 kcal/mol@LB@Unfolding Energy - sRNA 3.26755 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 89 |
0.007733 |
0.2889 |
b3426 |
glpD |
-8.48 |
0.239884 |
186 -- 234 |
7 -- 64 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________185__________________________________________________________235\n_____________|____________________________________________________________|\n5'-AAC...CGAAA_U____G________________AAA________UCU_______________________GCAUC...AGG-3'\n______________G_GAAU_AG_GGCA__GC_AUGG___CCAA_AGA______GA_UUGUGAUAG__GGGGCG\n______________|_:|||_||_||||__||_||||___||||_|||______:|_:|||||:|:__::|||:\n______________C_UUUA_UC_CCGU__CG_UACC___GGUU_UCU______UU_GACACUGUU__UUCCGU\n3'-UUU...ACAAC_U____G__A____UA__U____G______G___UUUAUU__A_________AU______AUAUUG-5'\n_____________|____________________________________________________________|\n_____________65___________________________________________________________6\n |
222 -- 228 |
15 -- 21 |
-34.508 kcal/mol |
13.8761 kcal/mol |
12.1536 kcal/mol |
185 235@LB@ | |@LB@5'-AAC...CGAAA U G AAA UCU GCAUC...AGG-3'@LB@ G GAAU AG GGCA GC AUGG CCAA AGA GA UUGUGAUAG GGGGCG@LB@ | :||| || |||| || |||| |||| ||| :| :|||||:|: ::|||:@LB@ C UUUA UC CCGU CG UACC GGUU UCU UU GACACUGUU UUCCGU@LB@3'-UUU...ACAAC U G A UA U G G UUUAUU A AU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -34.508 kcal/mol@LB@Unfolding Energy - mRNA 13.8761 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 186 -- 234@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 98 |
0.009218 |
0.3118 |
b3391 |
hofQ |
-10.83 |
0.081241 |
8 -- 57 |
7 -- 65 |
DNA catabolic putative fimbrial transporter |
|
_____________7_____________________________________________________________58\n_____________|_____________________________________________________________|\n____5'-CUAUCAG____UGG_________G____GC__A___U___UGU_________________________AAAGA...UAG-3'\n______________GGGA___UAG_GGCGA_GCGA__GC_UCA_CGG___AAUAAAA_____GAC_____GGGCA\n______________||:|___:||_|||:|_||:|__||_:||_|:|___|||||||_____|||_____:||||\n______________CCUU___GUC_CCGUU_CGUU__CG_GGU_GUC___UUAUUUU_____CUG_____UCCGU\n3'-UUU...UACAA____UUA___A_____A____AC______U___UU________AGACA___UUAUU_____AUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________6\n |
43 -- 49 |
25 -- 31 |
-34.6984 kcal/mol |
11.715 kcal/mol |
12.1538 kcal/mol |
7 58@LB@ | |@LB@ 5'-CUAUCAG UGG G GC A U UGU AAAGA...UAG-3'@LB@ GGGA UAG GGCGA GCGA GC UCA CGG AAUAAAA GAC GGGCA@LB@ ||:| :|| |||:| ||:| || :|| |:| ||||||| ||| :||||@LB@ CCUU GUC CCGUU CGUU CG GGU GUC UUAUUUU CUG UCCGU@LB@3'-UUU...UACAA UUA A A AC U UU AGACA UUAUU AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -34.6984 kcal/mol@LB@Unfolding Energy - mRNA 11.715 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 8 -- 57@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 25 -- 31@LB@ |
