| 127 |
0.01373 |
0.3614 |
b0463 |
acrA |
-13.78 |
0.016343 |
252 -- 289 |
8 -- 54 |
multidrug efflux system |
|
_____________251________________________________________________290\n_____________|__________________________________________________|\n5'-GCC...UCUCA________UUA_____U________________________C__AC____CCAAC...GUG-3'\n______________GGCA__GC____GCCC_AACAGGA_________UGUGACGA_AA__AGGC\n______________||||__||____||||_|||||:|_________||||||:|_||__||||\n______________CCGU__CG____CGGG_UUGUCUU_________ACACUGUU_UU__UCCG\n3'-UUU...AGUCA____UA__UUAC____________UUAUUUUAG________A________UAUAUUG-5'\n_____________|__________________________________________________|\n_____________55_________________________________________________7\n |
274 -- 280 |
15 -- 21 |
-34.7713 kcal/mol |
8.97181 kcal/mol |
12.019 kcal/mol |
251 290@LB@ | |@LB@5'-GCC...UCUCA UUA U C AC CCAAC...GUG-3'@LB@ GGCA GC GCCC AACAGGA UGUGACGA AA AGGC@LB@ |||| || |||| |||||:| ||||||:| || ||||@LB@ CCGU CG CGGG UUGUCUU ACACUGUU UU UCCG@LB@3'-UUU...AGUCA UA UUAC UUAUUUUAG A UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -34.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.97181 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 252 -- 289@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 167 |
0.01994 |
0.3993 |
b1982 |
amn |
-7.06 |
0.411594 |
174 -- 215 |
8 -- 54 |
AMP nucleosidase |
|
_____________173______________________________________________216\n_____________|________________________________________________|\n5'-UUU...UGUGC_____U____________________CACACA___A____________UCCGG...GCA-3'\n______________GGUAA_UGU_AUGG___AACAGGAGA_______UG__AUAAUAAGGGC\n______________||:||_||:_||||___|||||:|:|_______||__|:|||||:|||\n______________CCGUU_ACG_UACC___UUGUCUUUU_______AC__UGUUAUUUCCG\n3'-UUU...AGUCA_________U____GGG_________AUUUUAG__AC___________UAUAUUG-5'\n_____________|________________________________________________|\n_____________55_______________________________________________7\n |
209 -- 215 |
8 -- 14 |
-29.9928 kcal/mol |
10.9089 kcal/mol |
12.019 kcal/mol |
173 216@LB@ | |@LB@5'-UUU...UGUGC U CACACA A UCCGG...GCA-3'@LB@ GGUAA UGU AUGG AACAGGAGA UG AUAAUAAGGGC@LB@ ||:|| ||: |||| |||||:|:| || |:|||||:|||@LB@ CCGUU ACG UACC UUGUCUUUU AC UGUUAUUUCCG@LB@3'-UUU...AGUCA U GGG AUUUUAG AC UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -7.06 kcal/mol@LB@Hybridization Energy -29.9928 kcal/mol@LB@Unfolding Energy - mRNA 10.9089 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 174 -- 215@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 189 |
0.02329 |
0.4145 |
b1823 |
cspC |
-8.37 |
0.250499 |
214 -- 248 |
8 -- 63 |
stress protein member of the CspA-family |
|
_____________213______________________________________________________249\n_____________|________________________________________________________|\n5'-UAU...GAUUA____________UA__________________________________________UUUGG...UCU-3'\n______________AAGGUCA__GGU_____AGUGGUUCAAC________GAGUC________UAAAGGU\n______________||::|||__||:_____|:|||::||||________:|:||________||||||:\n______________UUUUAGU__CCG_____UUACCGGGUUG________UUUAG________AUUUCCG\n3'-UUU...CAACC_______CA___UUACG___________UCUUUUAU_____ACACUGUU_______UAUAUUG-5'\n_____________|________________________________________________________|\n_____________64_______________________________________________________7\n |
242 -- 248 |
8 -- 14 |
-25.9028 kcal/mol |
5.39828 kcal/mol |
12.1311 kcal/mol |
213 249@LB@ | |@LB@5'-UAU...GAUUA UA UUUGG...UCU-3'@LB@ AAGGUCA GGU AGUGGUUCAAC GAGUC UAAAGGU@LB@ ||::||| ||: |:|||::|||| :|:|| ||||||:@LB@ UUUUAGU CCG UUACCGGGUUG UUUAG AUUUCCG@LB@3'-UUU...CAACC CA UUACG UCUUUUAU ACACUGUU UAUAUUG-5'@LB@ | |@LB@ 64 7@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -25.9028 kcal/mol@LB@Unfolding Energy - mRNA 5.39828 kcal/mol@LB@Unfolding Energy - sRNA 12.1311 kcal/mol@LB@@LB@Position - mRNA 214 -- 248@LB@Position - sRNA 8 -- 63@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 28 |
0.001683 |
0.2021 |
b0166 |
dapD |
-9.25 |
0.172213 |
119 -- 166 |
9 -- 65 |
2 3 4 5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
|
_____________118___________________________________________________________167\n_____________|_____________________________________________________________|\n5'-UUG...CAGCA_____UGC_____C_______A___A_____UC______________CAA___________GUGAU...AGG-3'\n______________GGAAG___AUCAG_GGU__UG_CAG_GGCCC____________AAUC____ACGAUAAAGG\n______________||||:___|||||_||:__||_||:_|||||____________||||____||:|||||||\n______________CCUUU___UAGUC_CCG__AC_GUU_CCGGG____________UUAG____UGUUAUUUCC\n3'-UUU...UACAA_____________A___UU______A_____UUGUCUUUUAUU____ACAC__________GUAUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________8\n |
160 -- 166 |
9 -- 15 |
-36.4613 kcal/mol |
16.0785 kcal/mol |
11.1365 kcal/mol |
118 167@LB@ | |@LB@5'-UUG...CAGCA UGC C A A UC CAA GUGAU...AGG-3'@LB@ GGAAG AUCAG GGU UG CAG GGCCC AAUC ACGAUAAAGG@LB@ ||||: ||||| ||: || ||: ||||| |||| ||:|||||||@LB@ CCUUU UAGUC CCG AC GUU CCGGG UUAG UGUUAUUUCC@LB@3'-UUU...UACAA A UU A UUGUCUUUUAUU ACAC GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -36.4613 kcal/mol@LB@Unfolding Energy - mRNA 16.0785 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 119 -- 166@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 34 |
0.002116 |
0.2088 |
b0081 |
mraZ |
-11.86 |
0.047767 |
154 -- 189 |
9 -- 59 |
RsmH methytransferase inhibitor |
|
_____________153___________________________________________________190\n_____________|_____________________________________________________|\n5'-GAU...UCCUU_______G__AU_________AA_____________________G________GUGAG...AAA-3'\n______________UCAGUGG_AA__UGUGG_GGC__A________________GUGG_AAUAAGGG\n______________|||||||_||__||:::_|||__|________________|||:_|||||:||\n______________AGUCACC_UU__ACGUU_CCG__U________________CACU_UUAUUUCC\n3'-UUU...CUUUU_______G_________A___GG_UGUCUUUUAUUUUAGA____G________GUAUAUUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________8\n |
183 -- 189 |
9 -- 15 |
-29.7093 kcal/mol |
6.7157 kcal/mol |
11.1344 kcal/mol |
153 190@LB@ | |@LB@5'-GAU...UCCUU G AU AA G GUGAG...AAA-3'@LB@ UCAGUGG AA UGUGG GGC A GUGG AAUAAGGG@LB@ ||||||| || ||::: ||| | |||: |||||:||@LB@ AGUCACC UU ACGUU CCG U CACU UUAUUUCC@LB@3'-UUU...CUUUU G A GG UGUCUUUUAUUUUAGA G GUAUAUUG-5'@LB@ | |@LB@ 60 8@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -29.7093 kcal/mol@LB@Unfolding Energy - mRNA 6.7157 kcal/mol@LB@Unfolding Energy - sRNA 11.1344 kcal/mol@LB@@LB@Position - mRNA 154 -- 189@LB@Position - sRNA 9 -- 59@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 54 |
0.003913 |
0.237 |
b0387 |
yaiI |
-8.67 |
0.221647 |
168 -- 177 |
9 -- 18 |
UPF0178 family protein |
|
_____________167________178\n_____________|__________|\n5'-CAC...GCGAC__________AUUAC...CAA-3'\n______________ACAAUAGAGG\n______________||||||:|||\n______________UGUUAUUUCC\n3'-UUU...GACAC__________GUAUAUUG-5'\n_____________|__________|\n_____________19_________8\n |
171 -- 177 |
9 -- 15 |
-10.6786 kcal/mol |
1.38452 kcal/mol |
0.627418 kcal/mol |
167 178@LB@ | |@LB@5'-CAC...GCGAC AUUAC...CAA-3'@LB@ ACAAUAGAGG@LB@ ||||||:|||@LB@ UGUUAUUUCC@LB@3'-UUU...GACAC GUAUAUUG-5'@LB@ | |@LB@ 19 8@LB@@LB@@LB@Energy -8.67 kcal/mol@LB@Hybridization Energy -10.6786 kcal/mol@LB@Unfolding Energy - mRNA 1.38452 kcal/mol@LB@Unfolding Energy - sRNA 0.627418 kcal/mol@LB@@LB@Position - mRNA 168 -- 177@LB@Position - sRNA 9 -- 18@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 66 |
0.005339 |
0.2645 |
b1476 |
fdnI |
-10.79 |
0.082799 |
156 -- 194 |
9 -- 48 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________155________________________________________195\n_____________|__________________________________________|\n5'-CGU...CAUCG___U________AUA_____________GA______G_____AUCAU...UUU-3'\n______________GUA_UGGCCCGA___AGGAAGUGGA__C__UGACGA__GAGG\n______________|:|_||||||:|___||:||:|::|__|__||||:|__:|||\n______________CGU_ACCGGGUU___UCUUUUAUUU__G__ACUGUU__UUCC\n3'-UUU...CGUUA___U________G____________UA_AC______AU____GUAUAUUG-5'\n_____________|__________________________________________|\n_____________49_________________________________________8\n |
161 -- 167 |
37 -- 43 |
-34.1322 kcal/mol |
12.2398 kcal/mol |
11.1008 kcal/mol |
155 195@LB@ | |@LB@5'-CGU...CAUCG U AUA GA G AUCAU...UUU-3'@LB@ GUA UGGCCCGA AGGAAGUGGA C UGACGA GAGG@LB@ |:| ||||||:| ||:||:|::| | ||||:| :|||@LB@ CGU ACCGGGUU UCUUUUAUUU G ACUGUU UUCC@LB@3'-UUU...CGUUA U G UA AC AU GUAUAUUG-5'@LB@ | |@LB@ 49 8@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -34.1322 kcal/mol@LB@Unfolding Energy - mRNA 12.2398 kcal/mol@LB@Unfolding Energy - sRNA 11.1008 kcal/mol@LB@@LB@Position - mRNA 156 -- 194@LB@Position - sRNA 9 -- 48@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 92 |
0.007983 |
0.2918 |
b2513 |
yfgM |
-8.87 |
0.203113 |
70 -- 109 |
9 -- 65 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________69___________________________________________________________110\n_____________|____________________________________________________________|\n5'-GGC...UGCUG__U_____UGA_____________C___A_______________________________AUUUG...UUG-3'\n______________GG_GAGUC___AGUGGC____UAA_GGC_CAGCAG________________UAGUGAAGG\n______________||_:|:||___||||||____:||_|||_||:|||________________:|:|:||||\n______________CC_UUUAG___UCACCG____GUU_CCG_GUUGUC________________GUUAUUUCC\n3'-UUU...UACAA__U______________UUAC___A___G______UUUUAUUUUAGACACU_________GUAUAUUG-5'\n_____________|____________________________________________________________|\n_____________66___________________________________________________________8\n |
103 -- 109 |
9 -- 15 |
-31.9345 kcal/mol |
11.9273 kcal/mol |
11.1365 kcal/mol |
69 110@LB@ | |@LB@5'-GGC...UGCUG U UGA C A AUUUG...UUG-3'@LB@ GG GAGUC AGUGGC UAA GGC CAGCAG UAGUGAAGG@LB@ || :|:|| |||||| :|| ||| ||:||| :|:|:||||@LB@ CC UUUAG UCACCG GUU CCG GUUGUC GUUAUUUCC@LB@3'-UUU...UACAA U UUAC A G UUUUAUUUUAGACACU GUAUAUUG-5'@LB@ | |@LB@ 66 8@LB@@LB@@LB@Energy -8.87 kcal/mol@LB@Hybridization Energy -31.9345 kcal/mol@LB@Unfolding Energy - mRNA 11.9273 kcal/mol@LB@Unfolding Energy - sRNA 11.1365 kcal/mol@LB@@LB@Position - mRNA 70 -- 109@LB@Position - sRNA 9 -- 65@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 123 |
0.01273 |
0.3462 |
b1817 |
manX |
-9.41 |
0.160028 |
181 -- 191 |
9 -- 19 |
fused mannose-specific PTS enzymes: IIA component/IIB component |
|
_____________180_________192\n_____________|___________|\n5'-UUA...UUAAC___________AGGUA...GGA-3'\n______________GAUAAUAAAGG\n______________||:||||||||\n______________CUGUUAUUUCC\n3'-UUU...AGACA___________GUAUAUUG-5'\n_____________|___________|\n_____________20__________8\n |
185 -- 191 |
9 -- 15 |
-11.4394 kcal/mol |
1.08042 kcal/mol |
0.949641 kcal/mol |
180 192@LB@ | |@LB@5'-UUA...UUAAC AGGUA...GGA-3'@LB@ GAUAAUAAAGG@LB@ ||:||||||||@LB@ CUGUUAUUUCC@LB@3'-UUU...AGACA GUAUAUUG-5'@LB@ | |@LB@ 20 8@LB@@LB@@LB@Energy -9.41 kcal/mol@LB@Hybridization Energy -11.4394 kcal/mol@LB@Unfolding Energy - mRNA 1.08042 kcal/mol@LB@Unfolding Energy - sRNA 0.949641 kcal/mol@LB@@LB@Position - mRNA 181 -- 191@LB@Position - sRNA 9 -- 19@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 181 |
0.02239 |
0.4143 |
b2894 |
xerD |
-11.89 |
0.046874 |
147 -- 194 |
9 -- 61 |
site-specific tyrosine recombinase |
|
_____________146_____________________________________________________195\n_____________|_______________________________________________________|\n5'-ACC...GCUUU_____C____________AA___A_______UC_______GA_____C_______GCGCA...UGU-3'\n______________AGUCA__GGCA___CAAU__GGC_UAAUGGA_____AAAU__GUGAC_AUAAGGG\n______________|:|||__||||___||||__|||_:||::||_____||||__|||||_||||:||\n______________UUAGU__CCGU___GUUA__CCG_GUUGUCU_____UUUA__CACUG_UAUUUCC\n3'-UUU...ACCUU_____CA____UAC_________G_______UUUAU____GA_____U_______GUAUAUUG-5'\n_____________|_______________________________________________________|\n_____________62______________________________________________________8\n |
188 -- 194 |
9 -- 15 |
-33.0704 kcal/mol |
10.0398 kcal/mol |
11.1358 kcal/mol |
146 195@LB@ | |@LB@5'-ACC...GCUUU C AA A UC GA C GCGCA...UGU-3'@LB@ AGUCA GGCA CAAU GGC UAAUGGA AAAU GUGAC AUAAGGG@LB@ |:||| |||| |||| ||| :||::|| |||| ||||| ||||:||@LB@ UUAGU CCGU GUUA CCG GUUGUCU UUUA CACUG UAUUUCC@LB@3'-UUU...ACCUU CA UAC G UUUAU GA U GUAUAUUG-5'@LB@ | |@LB@ 62 8@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -33.0704 kcal/mol@LB@Unfolding Energy - mRNA 10.0398 kcal/mol@LB@Unfolding Energy - sRNA 11.1358 kcal/mol@LB@@LB@Position - mRNA 147 -- 194@LB@Position - sRNA 9 -- 61@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 9 -- 15@LB@ |
