| 4 |
6.145e-05 |
0.05167 |
b4217 |
ytfK |
-14.33 |
0.011783 |
150 -- 205 |
11 -- 68 |
DUF1107 family protein |
|
_____________149________________________________________________________________206\n_____________|__________________________________________________________________|\n5'-GAA...UAAUA______CC___________CC___CA___GUAAUAC______________________________AAUUU...AAU-3'\n______________GUUGGG__GAUU_GUGGCA__GCA__GGC_______UCAGCAGGAGAUA_________ACAAUGAA\n______________|||||:__:||:_||||||__|||__|||_______:||:|||:|:|||_________|||||:||\n______________CAACCU__UUAG_CACCGU__CGU__CCG_______GGUUGUCUUUUAU_________UGUUAUUU\n3'-UUU...AUAUA______U_____U______UA___UA_______________________UUUAGACAC________CCGUA...UUG-5'\n_____________|__________________________________________________________________|\n_____________69_________________________________________________________________10\n |
199 -- 205 |
11 -- 17 |
-43.2853 kcal/mol |
16.8726 kcal/mol |
12.0809 kcal/mol |
149 206@LB@ | |@LB@5'-GAA...UAAUA CC CC CA GUAAUAC AAUUU...AAU-3'@LB@ GUUGGG GAUU GUGGCA GCA GGC UCAGCAGGAGAUA ACAAUGAA@LB@ |||||: :||: |||||| ||| ||| :||:|||:|:||| |||||:||@LB@ CAACCU UUAG CACCGU CGU CCG GGUUGUCUUUUAU UGUUAUUU@LB@3'-UUU...AUAUA U U UA UA UUUAGACAC CCGUA...UUG-5'@LB@ | |@LB@ 69 10@LB@@LB@@LB@Energy -14.33 kcal/mol@LB@Hybridization Energy -43.2853 kcal/mol@LB@Unfolding Energy - mRNA 16.8726 kcal/mol@LB@Unfolding Energy - sRNA 12.0809 kcal/mol@LB@@LB@Position - mRNA 150 -- 205@LB@Position - sRNA 11 -- 68@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 20 |
0.0008987 |
0.1511 |
b2597 |
raiA |
-11.08 |
0.071670 |
189 -- 211 |
11 -- 33 |
cold shock protein associated with 30S ribosomal subunit |
|
_____________188_____________________212\n_____________|_______________________|\n5'-GCG...GACAA____________A__________CAUUA...AUC-3'\n______________GAGGUAAAAUUU_UGACAAUGAA\n______________:|::||||||:|_|||||||:||\n______________UUUUAUUUUAGA_ACUGUUAUUU\n3'-UUU...UUGUC____________C__________CCGUA...UUG-5'\n_____________|_______________________|\n_____________34______________________10\n |
205 -- 211 |
11 -- 17 |
-19.0558 kcal/mol |
3.03608 kcal/mol |
4.94152 kcal/mol |
188 212@LB@ | |@LB@5'-GCG...GACAA A CAUUA...AUC-3'@LB@ GAGGUAAAAUUU UGACAAUGAA@LB@ :|::||||||:| |||||||:||@LB@ UUUUAUUUUAGA ACUGUUAUUU@LB@3'-UUU...UUGUC C CCGUA...UUG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.0558 kcal/mol@LB@Unfolding Energy - mRNA 3.03608 kcal/mol@LB@Unfolding Energy - sRNA 4.94152 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 40 |
0.00261 |
0.2088 |
b3008 |
metC |
-11.48 |
0.058180 |
224 -- 274 |
11 -- 59 |
cystathionine beta-lyase PLP-dependent |
|
_____________223___________________________________________________275\n_____________|_____________________________________________________|\n5'-CGA...GAUAC___AC____G__________A_G_____A______CAC___C_GC________UAGCG...CGC-3'\n______________UCA__UGGU_AAUGCA__GG_C_CAGCA_AAAAUA___UCU_G__GCGGUAAA\n______________|||__|||:_||||||__||_|_||:||_||||||___|||_|__:|::||||\n______________AGU__ACCG_UUACGU__CC_G_GUUGU_UUUUAU___AGA_C__UGUUAUUU\n3'-UUU...CUUUU___C____________UA____G_____C______UUU_____AC________CCGUA...UUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________10\n |
268 -- 274 |
11 -- 17 |
-31.6805 kcal/mol |
9.07324 kcal/mol |
11.1233 kcal/mol |
223 275@LB@ | |@LB@5'-CGA...GAUAC AC G A G A CAC C GC UAGCG...CGC-3'@LB@ UCA UGGU AAUGCA GG C CAGCA AAAAUA UCU G GCGGUAAA@LB@ ||| |||: |||||| || | ||:|| |||||| ||| | :|::||||@LB@ AGU ACCG UUACGU CC G GUUGU UUUUAU AGA C UGUUAUUU@LB@3'-UUU...CUUUU C UA G C UUU AC CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -31.6805 kcal/mol@LB@Unfolding Energy - mRNA 9.07324 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 224 -- 274@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 42 |
0.002679 |
0.2088 |
b1427 |
rimL |
-12.89 |
0.027177 |
178 -- 217 |
11 -- 49 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________177_______________________________________218\n_____________|_________________________________________|\n5'-GAU...ACAAC________AU____U___________GA___AA________AGUAA...CCU-3'\n______________UGC_AUGG__UGAC_GGAGAUAAGAU__CUG__ACGAUAAA\n______________|||_||||__::||_|:|:||||:||__|||__||:|||||\n______________ACG_UACC__GUUG_CUUUUAUUUUA__GAC__UGUUAUUU\n3'-UUU...CCGUU___U____GG____U________________AC________CCGUA...UUG-5'\n_____________|_________________________________________|\n_____________50________________________________________10\n |
211 -- 217 |
11 -- 17 |
-27.9575 kcal/mol |
3.9779 kcal/mol |
11.0867 kcal/mol |
177 218@LB@ | |@LB@5'-GAU...ACAAC AU U GA AA AGUAA...CCU-3'@LB@ UGC AUGG UGAC GGAGAUAAGAU CUG ACGAUAAA@LB@ ||| |||| ::|| |:|:||||:|| ||| ||:|||||@LB@ ACG UACC GUUG CUUUUAUUUUA GAC UGUUAUUU@LB@3'-UUU...CCGUU U GG U AC CCGUA...UUG-5'@LB@ | |@LB@ 50 10@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -27.9575 kcal/mol@LB@Unfolding Energy - mRNA 3.9779 kcal/mol@LB@Unfolding Energy - sRNA 11.0867 kcal/mol@LB@@LB@Position - mRNA 178 -- 217@LB@Position - sRNA 11 -- 49@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 65 |
0.005052 |
0.2614 |
b0451 |
amtB |
-9.90 |
0.127883 |
170 -- 220 |
11 -- 61 |
ammonium transporter |
|
_____________169____________________________________________________221\n_____________|______________________________________________________|\n5'-CCA...GCUGU____UC_____CACA____CA__AA_______________AUA_C_________AACUG...CGU-3'\n______________AAUC__UGGCA____GCAA__GG__CGA___AAAAUGAAG___G_GACGAUAAA\n______________||||__|||||____||||__||__|:|___|||||:||:___|_|||:|||||\n______________UUAG__ACCGU____CGUU__CC__GUU___UUUUAUUUU___C_CUGUUAUUU\n3'-UUU...ACCUU____UC_____UA______A___GG___GUC_________AGA_A_________CCGUA...UUG-5'\n_____________|______________________________________________________|\n_____________62_____________________________________________________10\n |
214 -- 220 |
11 -- 17 |
-30.4323 kcal/mol |
9.41224 kcal/mol |
11.1248 kcal/mol |
169 221@LB@ | |@LB@5'-CCA...GCUGU UC CACA CA AA AUA C AACUG...CGU-3'@LB@ AAUC UGGCA GCAA GG CGA AAAAUGAAG G GACGAUAAA@LB@ |||| ||||| |||| || |:| |||||:||: | |||:|||||@LB@ UUAG ACCGU CGUU CC GUU UUUUAUUUU C CUGUUAUUU@LB@3'-UUU...ACCUU UC UA A GG GUC AGA A CCGUA...UUG-5'@LB@ | |@LB@ 62 10@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -30.4323 kcal/mol@LB@Unfolding Energy - mRNA 9.41224 kcal/mol@LB@Unfolding Energy - sRNA 11.1248 kcal/mol@LB@@LB@Position - mRNA 170 -- 220@LB@Position - sRNA 11 -- 61@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 132 |
0.0144 |
0.3654 |
b2381 |
ypdB |
-7.98 |
0.293473 |
18 -- 39 |
11 -- 32 |
response regulator activating yhjX; pyruvate-responsive YpdAB two-component system |
|
_____________17_____________________40\n_____________|______________________|\n5'-AUU...GAAGC_________GCCG_________AUUGG...ACG-3'\n______________GAAUGAAAU____GGCAAUAAA\n______________:|||:||||____|:|||||||\n______________UUUAUUUUA____CUGUUAUUU\n3'-UUU...UGUCU_________GACA_________CCGUA...UUG-5'\n_____________|______________________|\n_____________33_____________________10\n |
33 -- 39 |
11 -- 17 |
-14.9693 kcal/mol |
2.07375 kcal/mol |
4.91579 kcal/mol |
17 40@LB@ | |@LB@5'-AUU...GAAGC GCCG AUUGG...ACG-3'@LB@ GAAUGAAAU GGCAAUAAA@LB@ :|||:|||| |:|||||||@LB@ UUUAUUUUA CUGUUAUUU@LB@3'-UUU...UGUCU GACA CCGUA...UUG-5'@LB@ | |@LB@ 33 10@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -14.9693 kcal/mol@LB@Unfolding Energy - mRNA 2.07375 kcal/mol@LB@Unfolding Energy - sRNA 4.91579 kcal/mol@LB@@LB@Position - mRNA 18 -- 39@LB@Position - sRNA 11 -- 32@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 148 |
0.01733 |
0.3828 |
b1760 |
ynjH |
-7.42 |
0.362448 |
2 -- 64 |
11 -- 71 |
DUF1496 family protein |
|
_____________1________________________________________________________________65\n_____________|________________________________________________________________|\n__________5'-U_______UUUAU____U___CUUU______U_______UAUACCAUCAAGAA____________CAAGA...AAG-3'\n______________UAUGUUG_____GUCA_GUG____UGCAGU__UUCGAC______________UGUGACGGUAAG\n______________|||||||_____:|||_|||____||||:|__::|:||______________||||||::|||:\n______________AUACAAC_____UAGU_CAC____ACGUUA__GGGUUG______________ACACUGUUAUUU\n3'-UUU...AAAAU_______CUUU_________CGUU______CC______UCUUUUAUUUUAG_____________CCGUA...UUG-5'\n_____________|________________________________________________________________|\n_____________72_______________________________________________________________10\n |
58 -- 64 |
11 -- 17 |
-35.6179 kcal/mol |
16.0903 kcal/mol |
12.1045 kcal/mol |
1 65@LB@ | |@LB@ 5'-U UUUAU U CUUU U UAUACCAUCAAGAA CAAGA...AAG-3'@LB@ UAUGUUG GUCA GUG UGCAGU UUCGAC UGUGACGGUAAG@LB@ ||||||| :||| ||| ||||:| ::|:|| ||||||::|||:@LB@ AUACAAC UAGU CAC ACGUUA GGGUUG ACACUGUUAUUU@LB@3'-UUU...AAAAU CUUU CGUU CC UCUUUUAUUUUAG CCGUA...UUG-5'@LB@ | |@LB@ 72 10@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -35.6179 kcal/mol@LB@Unfolding Energy - mRNA 16.0903 kcal/mol@LB@Unfolding Energy - sRNA 12.1045 kcal/mol@LB@@LB@Position - mRNA 2 -- 64@LB@Position - sRNA 11 -- 71@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 155 |
0.01799 |
0.3828 |
b1446 |
ydcY |
-7.41 |
0.363872 |
123 -- 175 |
11 -- 59 |
DUF2526 family protein |
|
_____________122______________________________________________________176\n_____________|________________________________________________________|\n5'-UAU...CUUAC___C____U___AC_____A___C_____CUU___UC_____GA___AU_______UUUCA...ACG-3'\n______________UCA_UGGC__UG____GGC_CCA_GCAGA___AUA__AUUUG__UGA__CGAUAAA\n______________|||_||||__||____|||_|||_:||||___|||__||:||__|||__|:|||||\n______________AGU_ACCG__AC____CCG_GGU_UGUCU___UAU__UAGAC__ACU__GUUAUUU\n3'-UUU...CUUUU___C____UU__GUUA_____________UU____UU___________________CCGUA...UUG-5'\n_____________|________________________________________________________|\n_____________60_______________________________________________________10\n |
169 -- 175 |
11 -- 17 |
-29.7235 kcal/mol |
11.188 kcal/mol |
11.1233 kcal/mol |
122 176@LB@ | |@LB@5'-UAU...CUUAC C U AC A C CUU UC GA AU UUUCA...ACG-3'@LB@ UCA UGGC UG GGC CCA GCAGA AUA AUUUG UGA CGAUAAA@LB@ ||| |||| || ||| ||| :|||| ||| ||:|| ||| |:|||||@LB@ AGU ACCG AC CCG GGU UGUCU UAU UAGAC ACU GUUAUUU@LB@3'-UUU...CUUUU C UU GUUA UU UU CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -7.41 kcal/mol@LB@Hybridization Energy -29.7235 kcal/mol@LB@Unfolding Energy - mRNA 11.188 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 123 -- 175@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 177 |
0.02174 |
0.4127 |
b1725 |
yniA |
-12.81 |
0.028485 |
66 -- 113 |
12 -- 55 |
fructosamine kinase family protein |
|
_____________65__________________________________________________114\n_____________|___________________________________________________|\n5'-GAG...CGACC___G____G_____AAUAG______________UGGUU_____________UCAGU...GGC-3'\n______________UGG_A__G_AAUGG_____CAACAGAAAAUAAA_____UUUG_GGCAAUAA\n______________|||_|__|_|||||_____||||||||||||||_____|:||_|:||||||\n______________ACC_U__C_UUACC_____GUUGUCUUUUAUUU_____AGAC_CUGUUAUU\n3'-UUU...UAGUC___G_UA_G_____GG_________________U________A________UCCGU...UUG-5'\n_____________|___________________________________________________|\n_____________56__________________________________________________11\n |
107 -- 113 |
12 -- 18 |
-33.1768 kcal/mol |
9.27067 kcal/mol |
11.0975 kcal/mol |
65 114@LB@ | |@LB@5'-GAG...CGACC G G AAUAG UGGUU UCAGU...GGC-3'@LB@ UGG A G AAUGG CAACAGAAAAUAAA UUUG GGCAAUAA@LB@ ||| | | ||||| |||||||||||||| |:|| |:||||||@LB@ ACC U C UUACC GUUGUCUUUUAUUU AGAC CUGUUAUU@LB@3'-UUU...UAGUC G UA G GG U A UCCGU...UUG-5'@LB@ | |@LB@ 56 11@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -33.1768 kcal/mol@LB@Unfolding Energy - mRNA 9.27067 kcal/mol@LB@Unfolding Energy - sRNA 11.0975 kcal/mol@LB@@LB@Position - mRNA 66 -- 113@LB@Position - sRNA 12 -- 55@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 187 |
0.02306 |
0.4145 |
b1854 |
pykA |
-9.88 |
0.128920 |
243 -- 268 |
12 -- 43 |
pyruvate kinase II |
|
_____________242______________________________269\n_____________|________________________________|\n5'-GAA...CGUUA_________AC____________C________UCUUG...ACG-3'\n______________GGCCCAGCA_______AGAUC_G_GAUAAUAA\n______________||||||:||_______|:|||_|_||:|||||\n______________CCGGGUUGU_______UUUAG_C_CUGUUAUU\n3'-UUU...CGUUA_________CUUUUAU_____A_A________UCCGU...UUG-5'\n_____________|________________________________|\n_____________44_______________________________11\n |
262 -- 268 |
12 -- 18 |
-24.7448 kcal/mol |
4.16838 kcal/mol |
10.6985 kcal/mol |
242 269@LB@ | |@LB@5'-GAA...CGUUA AC C UCUUG...ACG-3'@LB@ GGCCCAGCA AGAUC G GAUAAUAA@LB@ ||||||:|| |:||| | ||:|||||@LB@ CCGGGUUGU UUUAG C CUGUUAUU@LB@3'-UUU...CGUUA CUUUUAU A A UCCGU...UUG-5'@LB@ | |@LB@ 44 11@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -24.7448 kcal/mol@LB@Unfolding Energy - mRNA 4.16838 kcal/mol@LB@Unfolding Energy - sRNA 10.6985 kcal/mol@LB@@LB@Position - mRNA 243 -- 268@LB@Position - sRNA 12 -- 43@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 12 -- 18@LB@ |
