| 79 |
0.0288 |
0.29 |
ct_431 |
clpP_1 |
-3.71 |
0.580570 |
128 -- 134 |
79 -- 85 |
ATP-dependent Clp protease proteolytic subunit |
|
_____________127_____135\n_____________|_______|\n5'-GAA...ACGUG_______UUUAU...AAA-3'\n______________UGGCUGA\n______________:||||:|\n______________GCCGAUU\n3'-UUU...UCUAU_______GAGGU...GAA-5'\n_____________|_______|\n_____________86______78\n |
128 -- 134 |
79 -- 85 |
-7.88567 kcal/mol |
3.08 kcal/mol |
1.09751 kcal/mol |
127 135@LB@ | |@LB@5'-GAA...ACGUG UUUAU...AAA-3'@LB@ UGGCUGA@LB@ :||||:|@LB@ GCCGAUU@LB@3'-UUU...UCUAU GAGGU...GAA-5'@LB@ | |@LB@ 86 78@LB@@LB@@LB@Energy -3.71 kcal/mol@LB@Hybridization Energy -7.88567 kcal/mol@LB@Unfolding Energy - mRNA 3.08 kcal/mol@LB@Unfolding Energy - sRNA 1.09751 kcal/mol@LB@@LB@Position - mRNA 128 -- 134@LB@Position - sRNA 79 -- 85@LB@Position Seed - mRNA 128 -- 134@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 112 |
0.04461 |
0.3262 |
ct_089 |
lcrE |
-7.82 |
0.094118 |
129 -- 157 |
3 -- 33 |
low calcium response protein E |
|
_____________128_____________________________158\n_____________|_______________________________|\n5'-CGG...UACCA_______UUA_____AAA_____________CUUUG...UUA-3'\n______________AGAAGUU___CC_UG___UUAGAAU_CCAGC\n______________|||||:|___||_||___|||||||_|||:|\n______________UCUUCGA___GG_AC___AAUCUUA_GGUUG\n3'-UUU...CUCAG_______UAA__U__CGC_______U_____AA-5'\n_____________|_______________________________|\n_____________34______________________________2\n |
129 -- 135 |
27 -- 33 |
-21.9416 kcal/mol |
5.52555 kcal/mol |
8.59196 kcal/mol |
128 158@LB@ | |@LB@5'-CGG...UACCA UUA AAA CUUUG...UUA-3'@LB@ AGAAGUU CC UG UUAGAAU CCAGC@LB@ |||||:| || || ||||||| |||:|@LB@ UCUUCGA GG AC AAUCUUA GGUUG@LB@3'-UUU...CUCAG UAA U CGC U AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -7.82 kcal/mol@LB@Hybridization Energy -21.9416 kcal/mol@LB@Unfolding Energy - mRNA 5.52555 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 129 -- 157@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 63 |
0.02436 |
0.29 |
ct_270 |
pbp3 |
-9.04 |
0.048476 |
131 -- 156 |
5 -- 34 |
penicillin-binding protein |
|
_____________130_____________________________157\n_____________|_______________________________|\n5'-UAA...UGUUG____U____U____UCC______________GUAUC...GAG-3'\n______________CAGA_AGCU_UUCU________AGAAUACCA\n______________||||_||||_|||:________|||||||||\n______________GUCU_UCGA_AAGG________UCUUAUGGU\n3'-UUU...UCUCA_________U____UACCGCAA_________UGAA-5'\n_____________|_______________________________|\n_____________35______________________________4\n |
149 -- 155 |
6 -- 12 |
-21.654 kcal/mol |
4.02029 kcal/mol |
8.59194 kcal/mol |
130 157@LB@ | |@LB@5'-UAA...UGUUG U U UCC GUAUC...GAG-3'@LB@ CAGA AGCU UUCU AGAAUACCA@LB@ |||| |||| |||: |||||||||@LB@ GUCU UCGA AAGG UCUUAUGGU@LB@3'-UUU...UCUCA U UACCGCAA UGAA-5'@LB@ | |@LB@ 35 4@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -21.654 kcal/mol@LB@Unfolding Energy - mRNA 4.02029 kcal/mol@LB@Unfolding Energy - sRNA 8.59194 kcal/mol@LB@@LB@Position - mRNA 131 -- 156@LB@Position - sRNA 5 -- 34@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 10 |
0.001873 |
0.154 |
ct_367 |
aroL |
-15.55 |
0.000817 |
132 -- 208 |
3 -- 59 |
shikimate kinase |
|
_____________131_______________________________________________________________________________209\n_____________|_________________________________________________________________________________|\n5'-UGU...ACAAA_______CUGUAACACACA___________________UUCCA__________AUUGCA___C____CACUAC________GUUCG...UGC-3'\n______________CCCUCCU____________GUGUAUAAAUA__AGAGUU______UAUUUCGUG______GCG__AGA______AUGCCAAC\n______________|||:|||____________|||||:|||:|__|||||:______||||:|:||______|||__|||______||:|||||\n______________GGGGGGA____________CACAUGUUUGU__UCUCAG______AUAAGGUAC______CGC__UCU______UAUGGUUG\n3'-UUU...CUGAA______________________________GA______UCUUCG__________________AA_________________AA-5'\n_____________|_________________________________________________________________________________|\n_____________60________________________________________________________________________________2\n |
202 -- 208 |
3 -- 9 |
-46.252 kcal/mol |
13.1534 kcal/mol |
17.5467 kcal/mol |
131 209@LB@ | |@LB@5'-UGU...ACAAA CUGUAACACACA UUCCA AUUGCA C CACUAC GUUCG...UGC-3'@LB@ CCCUCCU GUGUAUAAAUA AGAGUU UAUUUCGUG GCG AGA AUGCCAAC@LB@ |||:||| |||||:|||:| |||||: ||||:|:|| ||| ||| ||:|||||@LB@ GGGGGGA CACAUGUUUGU UCUCAG AUAAGGUAC CGC UCU UAUGGUUG@LB@3'-UUU...CUGAA GA UCUUCG AA AA-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -46.252 kcal/mol@LB@Unfolding Energy - mRNA 13.1534 kcal/mol@LB@Unfolding Energy - sRNA 17.5467 kcal/mol@LB@@LB@Position - mRNA 132 -- 208@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 178 |
0.07667 |
0.3541 |
ct_386 |
N/A |
-3.82 |
0.559485 |
134 -- 140 |
82 -- 88 |
|
|
_____________133_____141\n_____________|_______|\n5'-CUU...UUUGG_______ACUAC...AGA-3'\n______________AUAUGGU\n______________|||:||:\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
134 -- 140 |
82 -- 88 |
-6.88346 kcal/mol |
1.9622 kcal/mol |
1.09753 kcal/mol |
133 141@LB@ | |@LB@5'-CUU...UUUGG ACUAC...AGA-3'@LB@ AUAUGGU@LB@ |||:||:@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -3.82 kcal/mol@LB@Hybridization Energy -6.88346 kcal/mol@LB@Unfolding Energy - mRNA 1.9622 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 134 -- 140@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 107 |
0.04107 |
0.3134 |
ct_813 |
N/A |
-9.66 |
0.034154 |
135 -- 167 |
17 -- 51 |
inclusion membrane protein |
|
_____________134_________________________________168\n_____________|___________________________________|\n5'-CCA...AAAUU________AA________U___________U____CCAUC...AGG-3'\n______________UGUGCAGA___UAG_GUC_GAGGCUGUUUU_UGGU\n______________|||:||:|___|||_|||_||:|||:||::_|||:\n______________ACAUGUUU___AUC_CAG_CUUCGAUAAGG_ACCG\n3'-UUU...GGGAC________GUG___U___U___________U____CAAUC...GAA-5'\n_____________|___________________________________|\n_____________52__________________________________16\n |
155 -- 161 |
23 -- 29 |
-33.5835 kcal/mol |
11.0074 kcal/mol |
12.9166 kcal/mol |
134 168@LB@ | |@LB@5'-CCA...AAAUU AA U U CCAUC...AGG-3'@LB@ UGUGCAGA UAG GUC GAGGCUGUUUU UGGU@LB@ |||:||:| ||| ||| ||:|||:||:: |||:@LB@ ACAUGUUU AUC CAG CUUCGAUAAGG ACCG@LB@3'-UUU...GGGAC GUG U U U CAAUC...GAA-5'@LB@ | |@LB@ 52 16@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -33.5835 kcal/mol@LB@Unfolding Energy - mRNA 11.0074 kcal/mol@LB@Unfolding Energy - sRNA 12.9166 kcal/mol@LB@@LB@Position - mRNA 135 -- 167@LB@Position - sRNA 17 -- 51@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 103 |
0.03832 |
0.3036 |
ct_382 |
aroG |
-9.59 |
0.035559 |
138 -- 150 |
48 -- 60 |
3-deoxy-7-phosphoheptulonate synthase |
|
_____________137___________151\n_____________|_____________|\n5'-UUU...UUUUC_____________UAUGA...CUA-3'\n______________UCUUCCCUGUGUG\n______________||::||||||||:\n______________AGGGGGGACACAU\n3'-UUU...ACUGA_____________GUUUG...GAA-5'\n_____________|_____________|\n_____________61____________47\n |
144 -- 150 |
48 -- 54 |
-20.2814 kcal/mol |
1.44568 kcal/mol |
9.24642 kcal/mol |
137 151@LB@ | |@LB@5'-UUU...UUUUC UAUGA...CUA-3'@LB@ UCUUCCCUGUGUG@LB@ ||::||||||||:@LB@ AGGGGGGACACAU@LB@3'-UUU...ACUGA GUUUG...GAA-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -20.2814 kcal/mol@LB@Unfolding Energy - mRNA 1.44568 kcal/mol@LB@Unfolding Energy - sRNA 9.24642 kcal/mol@LB@@LB@Position - mRNA 138 -- 150@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 184 |
0.0822 |
0.363 |
ct_497 |
dnaB |
-7.07 |
0.138978 |
138 -- 179 |
3 -- 57 |
replicative DNA helicase |
|
_____________137________________________________________________________180\n_____________|__________________________________________________________|\n5'-ACG...AUAUU_____A_____CCU________CCG____G_________UU_________________CAUAA...GUG-3'\n______________CCCCU___UAC___AAC_CUGG____AGA_AGCU__UCC____________UACCAAC\n______________|||||___|||___|||_||:|____|||_||||__|||____________|||||||\n______________GGGGA___AUG___UUG_GAUC____UCU_UCGA__AGG____________AUGGUUG\n3'-UUU...GAAGG_____CAC___U_____U____UCAG________UA___UACCGCAAUCUU_______AA-5'\n_____________|__________________________________________________________|\n_____________58_________________________________________________________2\n |
173 -- 179 |
3 -- 9 |
-29.7257 kcal/mol |
6.10481 kcal/mol |
16.5501 kcal/mol |
137 180@LB@ | |@LB@5'-ACG...AUAUU A CCU CCG G UU CAUAA...GUG-3'@LB@ CCCCU UAC AAC CUGG AGA AGCU UCC UACCAAC@LB@ ||||| ||| ||| ||:| ||| |||| ||| |||||||@LB@ GGGGA AUG UUG GAUC UCU UCGA AGG AUGGUUG@LB@3'-UUU...GAAGG CAC U U UCAG UA UACCGCAAUCUU AA-5'@LB@ | |@LB@ 58 2@LB@@LB@@LB@Energy -7.07 kcal/mol@LB@Hybridization Energy -29.7257 kcal/mol@LB@Unfolding Energy - mRNA 6.10481 kcal/mol@LB@Unfolding Energy - sRNA 16.5501 kcal/mol@LB@@LB@Position - mRNA 138 -- 179@LB@Position - sRNA 3 -- 57@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 59 |
0.02324 |
0.29 |
ct_106 |
yceC |
-7.97 |
0.086897 |
139 -- 180 |
3 -- 31 |
tRNA pseudouridine synthase A |
|
_____________138__________________________________________181\n_____________|____________________________________________|\n5'-CUC...GAAAA__________UAUCA______AAUUCUCGUAAAAUC________ACACU...CCG-3'\n______________AAGCUGUUCU_______UAGA_______________GUACCAAC\n______________|||||:|||:_______||||_______________:|||||||\n______________UUCGAUAAGG_______AUCU_______________UAUGGUUG\n3'-UUU...CAGUC__________UACCGCA___________________________AA-5'\n_____________|____________________________________________|\n_____________32___________________________________________2\n |
174 -- 180 |
3 -- 9 |
-21.8491 kcal/mol |
5.39956 kcal/mol |
8.47511 kcal/mol |
138 181@LB@ | |@LB@5'-CUC...GAAAA UAUCA AAUUCUCGUAAAAUC ACACU...CCG-3'@LB@ AAGCUGUUCU UAGA GUACCAAC@LB@ |||||:|||: |||| :|||||||@LB@ UUCGAUAAGG AUCU UAUGGUUG@LB@3'-UUU...CAGUC UACCGCA AA-5'@LB@ | |@LB@ 32 2@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -21.8491 kcal/mol@LB@Unfolding Energy - mRNA 5.39956 kcal/mol@LB@Unfolding Energy - sRNA 8.47511 kcal/mol@LB@@LB@Position - mRNA 139 -- 180@LB@Position - sRNA 3 -- 31@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 189 |
0.0841 |
0.363 |
ct_792 |
mutS |
-5.18 |
0.336119 |
140 -- 151 |
22 -- 33 |
DNA mismatch repair protein MutS |
|
_____________139__________152\n_____________|____________|\n5'-AUA...ACAUA____C_______CCUAC...AAG-3'\n______________AGAG_CUGUUCC\n______________|||:_||:||||\n______________UCUU_GAUAAGG\n3'-UUU...CUCAG____C_______UACCG...GAA-5'\n_____________|____________|\n_____________34___________21\n |
145 -- 151 |
22 -- 28 |
-12.2041 kcal/mol |
2.29966 kcal/mol |
4.72509 kcal/mol |
139 152@LB@ | |@LB@5'-AUA...ACAUA C CCUAC...AAG-3'@LB@ AGAG CUGUUCC@LB@ |||: ||:||||@LB@ UCUU GAUAAGG@LB@3'-UUU...CUCAG C UACCG...GAA-5'@LB@ | |@LB@ 34 21@LB@@LB@@LB@Energy -5.18 kcal/mol@LB@Hybridization Energy -12.2041 kcal/mol@LB@Unfolding Energy - mRNA 2.29966 kcal/mol@LB@Unfolding Energy - sRNA 4.72509 kcal/mol@LB@@LB@Position - mRNA 140 -- 151@LB@Position - sRNA 22 -- 33@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 22 -- 28@LB@ |
