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CopraRNA 6038639

Input and runtime details for job 6038639 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 6038639 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:35:57 CET 2018
?CopraRNA Started@ Fri Feb 16 20:19:35 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 21:35:30 CET 2018
?Post-Processing Finished@ Fri Feb 16 21:35:37 CET 2018
?Job Completed@ Fri Feb 16 21:35:51 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=6038639&toolName=CopraRNA ( 30 days expiry )

Description of the job

IhtA

Output download complete results [zip]

Downloadable files

[csv]
[txt]
[csv]
[png] [pdf] [ps]
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[html] [pdf]
[png] [pdf]
[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000117 Chlamydia trachomatis D/UW-3/CX

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
124 0.04963 0.3262 ct_290 ptsN_1 -8.82 0.054773 1 -- 15 18 -- 32 PTS fructose transporter subunit IIA  
153 0.06453 0.3424 ct_729 serS -6.28 0.205305 1 -- 23 3 -- 33 serine--tRNA ligase  
173 0.07335 0.3448 ct_543 hisS -6.45 0.189015 1 -- 7 82 -- 88 histidine--tRNA ligase  
111 0.04436 0.3262 ct_405 ribC -3.97 0.532190 3 -- 10 49 -- 56 riboflavin synthase  
45 0.01671 0.29 ct_469 N/A -9.81 0.031394 4 -- 20 17 -- 35    
58 0.02303 0.29 ct_184 N/A -4.35 0.465673 5 -- 18 18 -- 35 Holliday junction resolvase  
158 0.06677 0.3424 ct_770 fabF -2.81 0.742017 6 -- 13 26 -- 33 3-oxoacyl-ACP synthase  
120 0.04883 0.3262 ct_827 nrdA -5.19 0.334730 7 -- 13 82 -- 88 ribonucleoside-diphosphate reductase subunit alpha  
177 0.07605 0.3532 ct_428 ubiE -3.67 0.587989 9 -- 17 20 -- 28 demethylmenaquinone methyltransferase  
164 0.06834 0.3424 ct_716 N/A -9.26 0.042990 10 -- 57 2 -- 60    
165 0.06872 0.3424 ct_859 lytB -7.21 0.129268 10 -- 22 19 -- 31 4-hydroxy-3-methylbut-2-enyl diphosphate reductase  
61 0.02387 0.29 ct_628 ispA -7.51 0.111028 11 -- 52 17 -- 56 farnesyl diphosphate synthase  
118 0.04846 0.3262 ct_515 rs8 -12.50 0.006183 13 -- 43 3 -- 33 30S ribosomal protein S8  
119 0.04857 0.3262 ct_706 clpP_2 -8.60 0.061801 14 -- 27 22 -- 35 ATP-dependent Clp protease proteolytic subunit  
200 0.0896 0.3683 ct_487 yhhF -5.19 0.334580 14 -- 20 79 -- 85 methyltransferase  
42 0.01617 0.29 ct_610 N/A -8.69 0.058803 15 -- 22 80 -- 87 virulence protein CADD  
21 0.0049 0.1918 ct_531 lpxA -7.30 0.123824 16 -- 37 17 -- 34 acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase  
155 0.06493 0.3424 ct_355 N/A -6.27 0.205473 16 -- 22 80 -- 86    
31 0.009434 0.2502 ct_824 N/A -6.02 0.231369 20 -- 32 21 -- 33 Zn-dependent peptidase  
57 0.02238 0.29 ct_132 N/A -4.44 0.450895 20 -- 27 53 -- 60    
108 0.04117 0.3134 ct_817 tyrP_1 -6.29 0.204127 20 -- 34 17 -- 30 tyrosine-specific transport protein  
51 0.01855 0.29 ct_758 murD -8.46 0.066834 21 -- 39 25 -- 51 UDP-N-acetylmuramoylalanine--D-glutamate ligase  
32 0.009822 0.2518 ct_649 ygfA -6.64 0.172247 22 -- 28 80 -- 86 5-formyltetrahydrofolate cyclo-ligase  
7 0.0007305 0.07962 ct_505 gapA -11.17 0.013986 23 -- 47 19 -- 39 glyceraldehyde-3-phosphate dehydrogenase  
4 0.0004436 0.07439 ct_864 xerD -16.31 0.000480 24 -- 38 17 -- 31 site-specific tyrosine recombinase XerD  
170 0.07264 0.3448 ct_415 yebL -4.69 0.409849 24 -- 30 22 -- 28 metal ABC transporter substrate-binding protein  
20 0.004812 0.1918 ct_026 rs16 -8.27 0.073959 26 -- 51 3 -- 33 30S ribosomal protein S16  
140 0.05617 0.3262 ct_759 nlpD -2.72 0.757894 26 -- 32 51 -- 57 muramidase  
121 0.04894 0.3262 ct_310 atpE -7.64 0.103947 27 -- 34 80 -- 87 V-type ATP synthase subunit E  
171 0.07267 0.3448 ct_057 gcpE -5.03 0.358241 27 -- 78 18 -- 60 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)  
18 0.004135 0.1836 ct_799 N/A -8.26 0.074627 30 -- 52 17 -- 35 50S ribosomal protein L25/general stress protein Ctc  
33 0.01042 0.2518 ct_780 N/A -7.85 0.092931 30 -- 50 15 -- 34    
84 0.03042 0.29 ct_726 N/A -6.32 0.200732 30 -- 36 81 -- 87 cell division protein  
50 0.01829 0.29 ct_588 rbsU -10.49 0.021035 31 -- 46 21 -- 34 serine phosphatase RsbU  
91 0.03287 0.2942 ct_674 yscC -7.61 0.105180 32 -- 46 36 -- 57 type II secretion system protein  
99 0.03647 0.3007 ct_810 rl32 -4.11 0.507281 35 -- 46 46 -- 58 50S ribosomal protein L32  
39 0.01357 0.2859 ct_401 gltT -7.80 0.095127 36 -- 47 44 -- 55 sodium:dicarboxylate symport protein  
81 0.02893 0.29 ct_185 zwf -6.95 0.147965 38 -- 47 51 -- 60 glucose-6-phosphate 1-dehydrogenase  
86 0.03096 0.29 ct_221 yqfU -7.15 0.133289 38 -- 44 80 -- 86    
98 0.03528 0.2959 ct_676 N/A -6.99 0.144558 38 -- 44 80 -- 86 protein-arginine kinase activator protein  
136 0.05474 0.3262 ct_592 sdhA -7.43 0.115894 38 -- 56 18 -- 34 succinate dehydrogenase flavoprotein subunit  
24 0.006504 0.2093 ct_534 cutE -7.36 0.119875 40 -- 61 34 -- 57 apolipoprotein N-acyltransferase  
115 0.04794 0.3262 ct_778 priA -6.05 0.227860 46 -- 52 54 -- 60 primosomal protein N'  
122 0.04895 0.3262 ct_683 N/A -8.21 0.076506 46 -- 53 80 -- 87    
36 0.01184 0.2704 ct_030 gmk -11.03 0.015227 49 -- 70 6 -- 34 guanylate kinase  
77 0.02807 0.29 ct_309 N/A -7.23 0.128520 50 -- 64 17 -- 33    
134 0.05433 0.3262 ct_581 thrS -7.17 0.132364 52 -- 64 21 -- 33 threonine--tRNA ligase  
101 0.03758 0.3036 ct_457 N/A -2.86 0.734073 54 -- 60 80 -- 86 transcriptional regulator  
138 0.05554 0.3262 ct_806 ptr -4.69 0.410459 54 -- 70 19 -- 33 insulinase/protease  
66 0.02511 0.29 ct_461 N/A -5.44 0.300406 64 -- 70 79 -- 85 UDP-2 3-diacylglucosamine pyrophosphohydrolase  
2 8.171e-05 0.03358 ct_802 rs18 -7.95 0.088258 66 -- 79 21 -- 34 30S ribosomal protein S18  
194 0.08693 0.3657 ct_285 lplA_1 -4.48 0.444512 66 -- 74 27 -- 35 lipoate protein ligase  
38 0.01345 0.2859 ct_769 ybeB -11.98 0.008536 76 -- 102 17 -- 43 ribosome silencing factor  
174 0.07335 0.3448 ct_777 bioF -7.25 0.126962 76 -- 92 19 -- 34 8-amino-7-oxononanoate synthase  
176 0.07518 0.3511 ct_481 N/A -6.18 0.214715 76 -- 94 18 -- 35    
198 0.08843 0.3671 ct_257 N/A -6.39 0.194258 76 -- 83 79 -- 86    
172 0.07285 0.3448 ct_090 lcrD -6.84 0.155915 81 -- 102 18 -- 39 low calcium response protein D  
88 0.03104 0.29 ct_766 miaA -2.38 0.813549 82 -- 88 27 -- 33 tRNA dimethylallyltransferase  
19 0.004244 0.1836 ct_583 gp6D -9.00 0.049504 83 -- 102 18 -- 35 virulence protein GP6-D  
156 0.06505 0.3424 ct_254 N/A -6.97 0.146186 84 -- 91 80 -- 87    
129 0.0523 0.3262 ct_872 pmpH -6.76 0.162049 85 -- 103 18 -- 34 outer membrane protein PmpH  
97 0.03496 0.2959 ct_539 trxA -6.38 0.195495 87 -- 94 80 -- 87 thioredoxin  
185 0.083 0.363 ct_260 N/A -8.27 0.074080 87 -- 93 53 -- 59    
6 0.000543 0.07439 ct_280 nqr4 -8.45 0.067322 89 -- 131 2 -- 35 Na(+)-translocating NADH-quinone reductase subunit D  
49 0.01821 0.29 ct_733 N/A -8.44 0.067485 96 -- 102 80 -- 86    
35 0.01072 0.2518 ct_483 N/A -8.14 0.079674 97 -- 146 5 -- 57    
195 0.08712 0.3657 ct_704 pcnB_2 -3.31 0.654425 101 -- 107 28 -- 34 poly A polymerase  
197 0.08765 0.3657 ct_851 map -5.60 0.279866 107 -- 113 81 -- 87 methionine aminopeptidase  
90 0.03275 0.2942 ct_332 pykF -4.34 0.468844 109 -- 116 80 -- 87 pyruvate kinase  
162 0.06757 0.3424 ct_083 N/A -6.28 0.205297 111 -- 125 18 -- 33    
12 0.002873 0.1836 ct_040 ruvB -8.58 0.062725 112 -- 136 36 -- 60 Holliday junction DNA helicase RuvB  
52 0.01886 0.29 ct_784 rnpA -5.05 0.354130 114 -- 120 80 -- 86 ribonuclease P protein component  
168 0.07022 0.3436 ct_336 ptsI -3.01 0.707290 114 -- 124 23 -- 33 phosphoenolpyruvate-protein phosphotransferase  
74 0.02719 0.29 ct_114 N/A -7.65 0.102976 115 -- 129 17 -- 32    
82 0.02927 0.29 ct_342 rs21 -5.39 0.307662 118 -- 125 14 -- 21 30S ribosomal protein S21  
87 0.03104 0.29 ct_437 fusA -5.85 0.250219 118 -- 125 79 -- 86 elongation factor G  
191 0.08461 0.363 ct_112 pepF -2.97 0.715117 121 -- 127 54 -- 60 oligoendopeptidase F  
47 0.01707 0.29 ct_577 N/A -4.79 0.394783 124 -- 141 41 -- 59    
73 0.02714 0.29 ct_211 N/A -9.30 0.041995 126 -- 170 20 -- 59    
130 0.05252 0.3262 ct_826 pssA -5.40 0.306560 126 -- 136 23 -- 33 CDP-diacylglycerol--serine O-phosphatidyltransferase  
79 0.0288 0.29 ct_431 clpP_1 -3.71 0.580570 128 -- 134 79 -- 85 ATP-dependent Clp protease proteolytic subunit  
112 0.04461 0.3262 ct_089 lcrE -7.82 0.094118 129 -- 157 3 -- 33 low calcium response protein E  
63 0.02436 0.29 ct_270 pbp3 -9.04 0.048476 131 -- 156 5 -- 34 penicillin-binding protein  
10 0.001873 0.154 ct_367 aroL -15.55 0.000817 132 -- 208 3 -- 59 shikimate kinase  
178 0.07667 0.3541 ct_386 N/A -3.82 0.559485 134 -- 140 82 -- 88    
107 0.04107 0.3134 ct_813 N/A -9.66 0.034154 135 -- 167 17 -- 51 inclusion membrane protein  
103 0.03832 0.3036 ct_382 aroG -9.59 0.035559 138 -- 150 48 -- 60 3-deoxy-7-phosphoheptulonate synthase  
184 0.0822 0.363 ct_497 dnaB -7.07 0.138978 138 -- 179 3 -- 57 replicative DNA helicase  
59 0.02324 0.29 ct_106 yceC -7.97 0.086897 139 -- 180 3 -- 31 tRNA pseudouridine synthase A  
189 0.0841 0.363 ct_792 mutS -5.18 0.336119 140 -- 151 22 -- 33 DNA mismatch repair protein MutS  
193 0.08525 0.3631 ct_196 N/A -5.32 0.316248 140 -- 149 20 -- 29 inclusion membrane protein  
187 0.08358 0.363 ct_041 N/A -5.64 0.274890 141 -- 160 41 -- 59    
117 0.04834 0.3262 ct_237 fabG -8.76 0.056710 143 -- 164 34 -- 58 3-oxoacyl-[acyl-carrier-protein] reductase  
154 0.06467 0.3424 ct_517 rl24 -3.21 0.671117 143 -- 150 27 -- 34 50S ribosomal protein L24  
143 0.05698 0.3262 ct_451 cdsA -5.69 0.268983 146 -- 169 3 -- 34 phosphatidate cytidylyltransferase  
126 0.05087 0.3262 ct_474 N/A -6.92 0.149609 150 -- 156 15 -- 21    
3 0.0003482 0.07439 ct_023 prfA -10.22 0.024627 158 -- 204 18 -- 56 peptide chain release factor  
43 0.01649 0.29 ct_590 N/A -9.68 0.033714 159 -- 170 17 -- 28    
40 0.01393 0.2859 ct_695 N/A -4.73 0.403172 160 -- 166 82 -- 88    
175 0.07342 0.3448 ct_738 yycJ -7.78 0.096435 160 -- 204 18 -- 50 Zn-dependent hydrolase  
37 0.01294 0.2859 ct_591 sdhB -7.06 0.139804 161 -- 176 18 -- 34 succinate dehydrogenase iron sulfur subunit  
186 0.08332 0.363 ct_811 plsX -5.83 0.252304 163 -- 171 79 -- 87 phosphate acyltransferase  
11 0.002752 0.1836 ct_015 phoH -12.12 0.007844 167 -- 186 33 -- 60 ATPase  
70 0.02698 0.29 ct_381 artJ -6.76 0.162330 168 -- 194 31 -- 57 arginine ABC transporter substrate-binding protein ArtJ  
127 0.0509 0.3262 ct_808 cafE -7.80 0.095102 169 -- 204 18 -- 57 ribonuclease E  
149 0.06369 0.3424 ct_124 accC -5.62 0.277702 171 -- 193 17 -- 31 acetyl-CoA carboxylase biotin carboxylase subunit  
89 0.03269 0.2942 ct_269 murE -8.94 0.051230 172 -- 183 46 -- 57 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase  
75 0.02725 0.29 ct_536 dnaQ_2 -6.54 0.180881 173 -- 186 18 -- 31 DNA polymerase III subunit epsilon  
137 0.05536 0.3262 ct_389 N/A -5.69 0.269629 175 -- 181 80 -- 86    
25 0.00654 0.2093 ct_672 N/A -9.75 0.032384 176 -- 205 17 -- 33 type III secretion system protein  
147 0.05913 0.3307 ct_243 lpxD -5.18 0.335797 179 -- 192 18 -- 32 UDP-3-O-acylglucosamine N-acyltransferase  
163 0.06794 0.3424 ct_661 N/A -2.85 0.735752 184 -- 191 21 -- 28 DNA topoisomerase IV subunit B  
188 0.08401 0.363 ct_024 N/A -5.57 0.284242 184 -- 199 20 -- 35 release factor glutamine methyltransferase  
166 0.06935 0.3427 ct_700 N/A -9.45 0.038462 185 -- 207 17 -- 35    
132 0.05402 0.3262 ct_150 rl33 -5.54 0.287166 186 -- 205 17 -- 33 50S ribosomal protein L33  
148 0.06134 0.3407 ct_434 ygbB -10.66 0.019089 186 -- 200 41 -- 57 2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase  
92 0.03292 0.2942 ct_558 lipA -15.60 0.000793 187 -- 244 3 -- 58 lipoyl synthase  
1 6.997e-05 0.03358 ct_198 oppA_3 -8.59 0.062291 189 -- 206 17 -- 33 oligopeptide ABC transporter substrate-binding protein  
85 0.03073 0.29 ct_522 rs3 -5.11 0.345416 189 -- 204 18 -- 34 30S ribosomal protein S3  
8 0.0008373 0.07962 ct_066 N/A -11.14 0.014316 190 -- 205 17 -- 33    
16 0.003859 0.1836 ct_666 N/A -9.59 0.035525 190 -- 206 16 -- 33    
64 0.02465 0.29 ct_045 pepA -6.49 0.184926 191 -- 205 17 -- 33 cytosol aminopeptidase  
67 0.02533 0.29 ct_395 grpE -6.02 0.231793 191 -- 203 19 -- 33 stress response protein GrpE  
26 0.006621 0.2093 ct_267 ihfA -8.59 0.062448 193 -- 205 17 -- 31 DNA-binding protein HU  
161 0.06753 0.3424 ct_656 N/A -5.22 0.330968 193 -- 236 21 -- 57    
179 0.07718 0.3544 ct_781 lysS -5.99 0.234962 194 -- 201 79 -- 86 lysine--tRNA ligase  
160 0.06752 0.3424 ct_324 N/A -4.86 0.383763 195 -- 205 17 -- 27    
5 0.0004969 0.07439 ct_056 N/A -17.69 0.000175 196 -- 255 6 -- 56    
131 0.05291 0.3262 ct_842 pnp -7.97 0.086989 198 -- 205 17 -- 24 polyribonucleotide nucleotidyltransferase  
78 0.0282 0.29 ct_131 N/A -9.30 0.042003 199 -- 219 17 -- 35    
106 0.04101 0.3134 ct_445 gltX -7.36 0.119711 199 -- 233 6 -- 32 glutamate--tRNA ligase  
116 0.04833 0.3262 ct_570 gspF -8.17 0.078365 199 -- 207 80 -- 88 type II secretion system protein F  
76 0.02744 0.29 ct_510 secY -5.37 0.309530 200 -- 207 80 -- 87 preprotein translocase subunit SecY  
113 0.04597 0.3262 ct_841 ftsH -6.80 0.159029 200 -- 207 80 -- 87 ATP-dependent zinc metalloprotease FtsH  
133 0.05414 0.3262 ct_059 fer -7.78 0.096344 200 -- 207 80 -- 87 ferredoxin  
27 0.007389 0.2199 ct_855 fumC -7.16 0.132975 201 -- 207 82 -- 88 fumarate hydratase  
181 0.07898 0.3587 ct_186 devB -5.59 0.281766 201 -- 207 80 -- 86 6-phosphogluconolactonase  
93 0.03342 0.2954 ct_815 mrsA_2 -4.95 0.370159 203 -- 227 23 -- 45 phosphoglucosamine mutase  
110 0.04403 0.3262 ct_742 ygcA -7.58 0.107160 204 -- 253 23 -- 59 rRNA methyltransferse  
199 0.0896 0.3683 ct_774 cysQ -5.35 0.311933 207 -- 214 53 -- 60 3'(2') 5'-bisphosphate nucleotidase  
183 0.08019 0.3602 ct_648 N/A -7.31 0.122948 212 -- 231 14 -- 34    
9 0.0008717 0.07962 ct_743 hctA -7.87 0.092034 214 -- 220 82 -- 88 histone H1-like protein  
44 0.01666 0.29 ct_438 rs7 -6.33 0.200160 214 -- 223 79 -- 88 30S ribosomal protein S7  
65 0.02498 0.29 ct_846 N/A -7.66 0.102535 215 -- 232 42 -- 57    
29 0.008327 0.236 ct_722 pgm -9.49 0.037543 218 -- 230 17 -- 29 2 3-bisphosphoglycerate-dependent phosphoglycerate mutase  
15 0.003628 0.1836 ct_134 N/A -6.77 0.161910 221 -- 229 80 -- 88    
105 0.03879 0.3036 ct_546 N/A -8.76 0.056849 221 -- 228 80 -- 87 contains leader (17) peptide  
48 0.01795 0.29 ct_863 N/A -9.34 0.040980 222 -- 242 40 -- 60    
94 0.03394 0.2959 ct_249 N/A -6.52 0.182571 223 -- 229 80 -- 86    
13 0.003406 0.1836 ct_744 N/A -10.55 0.020316 225 -- 240 17 -- 33    
14 0.003406 0.1836 ct_744 N/A -10.55 0.020316 225 -- 240 17 -- 33    
159 0.06732 0.3424 ct_663 N/A -7.57 0.107718 228 -- 234 15 -- 21 type III secretion system chaperone  
180 0.07821 0.3571 ct_831 murB -7.63 0.104376 230 -- 248 17 -- 33 UDP-N-acetylenolpyruvoylglucosamine reductase  
182 0.07944 0.3588 ct_320 nusG -7.37 0.119406 230 -- 236 81 -- 87 transcription termination/antitermination protein NusG  
104 0.03845 0.3036 ct_860 N/A -5.72 0.265250 231 -- 258 29 -- 56 type III secretion system translocator CopD2  
60 0.02363 0.29 ct_796 glyQ -6.44 0.189870 236 -- 248 21 -- 33 glycine--tRNA ligase  
146 0.05858 0.3298 ct_655 kdsA -5.70 0.267824 236 -- 245 48 -- 57 2-dehydro-3-deoxyphosphooctonate aldolase  
54 0.02089 0.29 ct_119 incA -7.14 0.134009 237 -- 243 52 -- 58 inclusion membrane protein A  
41 0.01426 0.2859 ct_458 YhhY -4.46 0.446972 238 -- 245 81 -- 88 acetyltransferase  
144 0.05714 0.3262 ct_392 yprS -4.10 0.509599 238 -- 247 22 -- 33    
34 0.01043 0.2518 ct_642 N/A -9.37 0.040224 239 -- 246 53 -- 60    
72 0.02709 0.29 ct_530 fmt -6.32 0.201483 239 -- 246 80 -- 87 methionyl-tRNA formyltransferase  
53 0.01942 0.29 ct_580 N/A -10.14 0.025883 244 -- 280 22 -- 57 S-adenosylmethionine/S-adenosylhomocysteine transporter  
167 0.06963 0.3427 ct_724 N/A -5.10 0.346834 244 -- 255 24 -- 35    
190 0.08414 0.363 ct_503 N/A -6.17 0.215667 244 -- 250 81 -- 87    
157 0.06639 0.3424 ct_213 rpiA -7.48 0.112460 245 -- 274 28 -- 57 ribose-5-phosphate isomerase A  
169 0.07086 0.3447 ct_615 sigA -4.07 0.514760 248 -- 272 10 -- 33 RNA polymerase sigma factor  
102 0.03801 0.3036 ct_001 N/A -7.82 0.094515 254 -- 277 28 -- 49    
123 0.04914 0.3262 ct_754 icc -7.18 0.131374 254 -- 264 47 -- 57    
30 0.009028 0.2474 ct_455 murA -8.03 0.084305 255 -- 264 26 -- 35 UDP-N-acetylglucosamine 1-carboxyvinyltransferase  
83 0.0294 0.29 ct_767 N/A -5.43 0.301596 255 -- 261 54 -- 60    
109 0.04235 0.3194 ct_002 gatC -8.76 0.056639 255 -- 282 18 -- 44 aspartyl/glutamyl-tRNA amidotransferase subunit C  
125 0.05005 0.3262 ct_644 yohI -5.25 0.326074 256 -- 262 53 -- 59 tRNA-dihydrouridine synthase  
71 0.027 0.29 ct_712 N/A -6.32 0.201489 257 -- 263 81 -- 87 type III secretion system effector protein  
80 0.02888 0.29 ct_821 sucC -7.97 0.087313 257 -- 264 53 -- 60 succinyl-CoA ligase subunit beta  
46 0.01681 0.29 ct_425 N/A -8.97 0.050526 259 -- 284 2 -- 23    
62 0.02417 0.29 ct_705 clpX -8.32 0.072096 259 -- 275 17 -- 33 ATP-dependent Clp protease ATP-binding subunit ClpX  
95 0.03456 0.2959 ct_073 N/A -12.13 0.007785 261 -- 279 41 -- 58 contains leader (19) peptide  
135 0.05472 0.3262 ct_283 N/A -6.89 0.152000 262 -- 284 14 -- 35    
56 0.02215 0.29 ct_104 fabI -6.34 0.199539 263 -- 271 80 -- 88 enoyl-(acyl carrier protein) reductase  
55 0.02093 0.29 ct_785 rl34 -4.69 0.410747 264 -- 270 80 -- 86 50S ribosomal protein L34  
68 0.02545 0.29 ct_369 aroB -8.93 0.051509 264 -- 292 1 -- 31 3-dehydroquinate synthase  
23 0.006311 0.2093 ct_671 N/A -7.19 0.130787 265 -- 279 17 -- 34    
151 0.06398 0.3424 ct_647 N/A -6.81 0.158308 265 -- 281 12 -- 34    
141 0.05655 0.3262 ct_645 N/A -6.85 0.155161 266 -- 276 17 -- 28    
139 0.05609 0.3262 ct_291 ptsN_2 -9.13 0.046270 268 -- 291 36 -- 59 PTS fructose transporter subunit IIA  
22 0.005311 0.1984 ct_111 groES -5.40 0.305537 269 -- 283 17 -- 33 co-chaperonin GroES  
192 0.08479 0.363 ct_293 accD -5.01 0.360945 270 -- 276 79 -- 85 acetyl-CoA carboxylase carboxyltransferase subunit beta  
100 0.03658 0.3007 ct_875 N/A -4.31 0.472369 272 -- 278 28 -- 34    
152 0.064 0.3424 ct_749 alaS -4.53 0.436714 274 -- 290 41 -- 57 alanine--tRNA ligase  
96 0.03475 0.2959 ct_548 N/A -8.10 0.081484 276 -- 282 54 -- 60    
145 0.05831 0.3298 ct_635 N/A -5.11 0.346704 276 -- 282 53 -- 59    
142 0.0566 0.3262 ct_284 N/A -6.95 0.147726 278 -- 292 18 -- 30 phospholipase D  
114 0.04665 0.3262 ct_848 N/A -8.83 0.054442 279 -- 286 79 -- 86    
196 0.08741 0.3657 ct_698 N/A -4.23 0.486304 280 -- 292 22 -- 34 tRNA modification GTPase  
17 0.003987 0.1836 ct_843 rs15 -6.01 0.232273 282 -- 295 22 -- 34 30S ribosomal protein S15  
69 0.02639 0.29 ct_745 hemG -5.84 0.251832 282 -- 296 21 -- 34 protoporphyrinogen oxidase  
28 0.007489 0.2199 ct_755 groEL_3 -5.45 0.299165 283 -- 296 17 -- 33 chaperonin GroEL  
128 0.05098 0.3262 ct_279 nqr3 -7.28 0.125274 283 -- 291 51 -- 59 Na(+)-translocating NADH-quinone reductase subunit C  
150 0.06394 0.3424 ct_208 gseA -4.42 0.454874 290 -- 300 19 -- 29 3-deoxy-D-manno-octulosonic acid transferase  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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