| 136 |
0.00981 |
0.2504 |
b4063 |
soxR |
-14.24 |
0.041834 |
39 -- 60 |
1 -- 21 |
redox-sensitive transcriptional activator of soxS; autorepressor |
|
_____________38_____________________61\n_____________|______________________|\n5'-GCA...CGACU_______U_UU______C____CAAUA...GUA-3'\n______________ACAUCAA_G__AAGCGG_UGGU\n______________|||||||_|__||||:|_|||:\n______________UGUAGUU_C__UUCGUC_ACCG\n3'-UUU...ACCCC_______U_UU___________-5'\n_____________|_____________________|\n_____________22____________________1\n |
39 -- 45 |
15 -- 21 |
-21.0533 kcal/mol |
5.29766 kcal/mol |
1.51103 kcal/mol |
38 61@LB@ | |@LB@5'-GCA...CGACU U UU C CAAUA...GUA-3'@LB@ ACAUCAA G AAGCGG UGGU@LB@ ||||||| | ||||:| |||:@LB@ UGUAGUU C UUCGUC ACCG@LB@3'-UUU...ACCCC U UU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.0533 kcal/mol@LB@Unfolding Energy - mRNA 5.29766 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 39 -- 60@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 131 |
0.009354 |
0.2491 |
b4478 |
dgoD |
-14.24 |
0.041949 |
180 -- 199 |
1 -- 22 |
D-galactonate dehydratase |
|
_____________179____________________200\n_____________|______________________|\n5'-AAA...GUUAA_____AUC______________AAUGA...UGA-3'\n______________GGCGU____GAGAGGCAGUG_C\n______________|:|:|____||:|:||||||_|\n______________CUGUA____CUUUUCGUCAC_G\n3'-UUU...UACCC_____GUUU___________C_-5'\n_____________|_____________________|\n_____________23____________________1\n |
192 -- 198 |
3 -- 9 |
-21.1696 kcal/mol |
5.38995 kcal/mol |
1.54023 kcal/mol |
179 200@LB@ | |@LB@5'-AAA...GUUAA AUC AAUGA...UGA-3'@LB@ GGCGU GAGAGGCAGUG C@LB@ |:|:| ||:|:|||||| |@LB@ CUGUA CUUUUCGUCAC G@LB@3'-UUU...UACCC GUUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.1696 kcal/mol@LB@Unfolding Energy - mRNA 5.38995 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 180 -- 199@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 62 |
0.003256 |
0.1843 |
b1243 |
oppA |
-14.22 |
0.042360 |
208 -- 232 |
1 -- 21 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________207_______________________233\n_____________|_________________________|\n5'-UGU...GACCA______CC_________UU___A__AGCUG...UCA-3'\n______________ACAUCA__AAGAGAAGU__AGU_GC\n______________||||||__||||:|||:__|||_||\n______________UGUAGU__UUCUUUUCG__UCA_CG\n3'-UUU...ACCCC______________________C__-5'\n_____________|________________________|\n_____________22_______________________1\n |
218 -- 224 |
7 -- 13 |
-18.9529 kcal/mol |
3.22094 kcal/mol |
1.51103 kcal/mol |
207 233@LB@ | |@LB@5'-UGU...GACCA CC UU A AGCUG...UCA-3'@LB@ ACAUCA AAGAGAAGU AGU GC@LB@ |||||| ||||:|||: ||| ||@LB@ UGUAGU UUCUUUUCG UCA CG@LB@3'-UUU...ACCCC C -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -18.9529 kcal/mol@LB@Unfolding Energy - mRNA 3.22094 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 208 -- 232@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 26 |
0.001009 |
0.1361 |
b3731 |
atpC |
-14.21 |
0.042680 |
144 -- 160 |
2 -- 20 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________143_________________161\n_____________|___________________|\n5'-UCC...GGUUC______________U____AAAAA...UGG-3'\n______________CAUCGAAGA__AGC_GUGG\n______________||||:||||__|||_||||\n______________GUAGUUUCU__UCG_CACC\n3'-UUU...CCCCU_________UU___U____G-5'\n_____________|___________________|\n_____________21__________________1\n |
146 -- 152 |
12 -- 18 |
-19.7705 kcal/mol |
4.1055 kcal/mol |
1.45839 kcal/mol |
143 161@LB@ | |@LB@5'-UCC...GGUUC U AAAAA...UGG-3'@LB@ CAUCGAAGA AGC GUGG@LB@ ||||:|||| ||| ||||@LB@ GUAGUUUCU UCG CACC@LB@3'-UUU...CCCCU UU U G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.21 kcal/mol@LB@Hybridization Energy -19.7705 kcal/mol@LB@Unfolding Energy - mRNA 4.1055 kcal/mol@LB@Unfolding Energy - sRNA 1.45839 kcal/mol@LB@@LB@Position - mRNA 144 -- 160@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 161 |
0.01187 |
0.2504 |
b0093 |
ftsQ |
-14.15 |
0.043981 |
32 -- 43 |
18 -- 29 |
divisome assembly protein membrane anchored protein involved in growth of wall at septum |
|
_____________31___________44\n_____________|____________|\n5'-GCU...GCAAA____________AUUGA...CCG-3'\n______________GGAUGGGGACGU\n______________::||||||||:|\n______________UUUACCCCUGUA\n3'-UUU...GGUGU____________GUUUC...CCG-5'\n_____________|____________|\n_____________30___________17\n |
37 -- 43 |
18 -- 24 |
-18.9266 kcal/mol |
4.11166 kcal/mol |
0.665542 kcal/mol |
31 44@LB@ | |@LB@5'-GCU...GCAAA AUUGA...CCG-3'@LB@ GGAUGGGGACGU@LB@ ::||||||||:|@LB@ UUUACCCCUGUA@LB@3'-UUU...GGUGU GUUUC...CCG-5'@LB@ | |@LB@ 30 17@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -18.9266 kcal/mol@LB@Unfolding Energy - mRNA 4.11166 kcal/mol@LB@Unfolding Energy - sRNA 0.665542 kcal/mol@LB@@LB@Position - mRNA 32 -- 43@LB@Position - sRNA 18 -- 29@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 99 |
0.006147 |
0.2179 |
b4477 |
dgoA |
-14.15 |
0.044006 |
176 -- 210 |
1 -- 31 |
2-oxo-3-deoxygalactonate 6-phosphate aldolase |
|
_____________175___________________________________211\n_____________|_____________________________________|\n5'-CAG...CAUUU____C___UAUAA___G_____CUCAU__________AAACU...UCG-3'\n______________CAGG_UGG_____GGA_CAUCG_______GCAGUGGC\n______________||::_|||_____|||_||||:_______||||||||\n______________GUUU_ACC_____CCU_GUAGU_______CGUCACCG\n3'-UUU...GAGGU____U_________________UUCUUUU________-5'\n_____________|____________________________________|\n_____________32___________________________________1\n |
204 -- 210 |
1 -- 7 |
-26.5297 kcal/mol |
9.84206 kcal/mol |
2.53929 kcal/mol |
175 211@LB@ | |@LB@5'-CAG...CAUUU C UAUAA G CUCAU AAACU...UCG-3'@LB@ CAGG UGG GGA CAUCG GCAGUGGC@LB@ ||:: ||| ||| ||||: ||||||||@LB@ GUUU ACC CCU GUAGU CGUCACCG@LB@3'-UUU...GAGGU U UUCUUUU -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -26.5297 kcal/mol@LB@Unfolding Energy - mRNA 9.84206 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 176 -- 210@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 200 |
0.01506 |
0.259 |
b0404 |
acpH |
-14.03 |
0.046767 |
57 -- 80 |
6 -- 28 |
acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase |
|
_____________56________________________81\n_____________|_________________________|\n5'-GCC...GGGAU______CA_________UUC_____AUUCA...GUU-3'\n______________AGUGGG___AUCAGGGA___GGGCA\n______________|:||||___||||::||___::|||\n______________UUACCC___UAGUUUCU___UUCGU\n3'-UUU...GUGUU______CUG________U_______CACCG-5'\n_____________|_________________________|\n_____________29________________________5\n |
66 -- 72 |
12 -- 18 |
-19.5231 kcal/mol |
4.78501 kcal/mol |
0.706454 kcal/mol |
56 81@LB@ | |@LB@5'-GCC...GGGAU CA UUC AUUCA...GUU-3'@LB@ AGUGGG AUCAGGGA GGGCA@LB@ |:|||| ||||::|| ::|||@LB@ UUACCC UAGUUUCU UUCGU@LB@3'-UUU...GUGUU CUG U CACCG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -19.5231 kcal/mol@LB@Unfolding Energy - mRNA 4.78501 kcal/mol@LB@Unfolding Energy - sRNA 0.706454 kcal/mol@LB@@LB@Position - mRNA 57 -- 80@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 69 |
0.003755 |
0.191 |
b0889 |
lrp |
-14.02 |
0.046951 |
165 -- 212 |
1 -- 32 |
leucine-responsive global transcriptional regulator |
|
_____________164______________________________________________213\n_____________|________________________________________________|\n5'-GUG...GUCAG______GUA____AGGAAUA________CAAUAAUAAU_____AUA__AAGAA...AGC-3'\n______________ACAGGA___GGGA_______CAGAGAGA__________GGUAG___GC\n______________|||::|___||||_______||:|||:|__________:|:||___||\n______________UGUUUU___CCCU_______GUUUCUUU__________UCGUC___CG\n3'-UUU...CGAGG______AC_____GUA___________________________AC___-5'\n_____________|_______________________________________________|\n_____________33______________________________________________1\n |
186 -- 192 |
10 -- 16 |
-19.2298 kcal/mol |
2.66644 kcal/mol |
2.53929 kcal/mol |
164 213@LB@ | |@LB@5'-GUG...GUCAG GUA AGGAAUA CAAUAAUAAU AUA AAGAA...AGC-3'@LB@ ACAGGA GGGA CAGAGAGA GGUAG GC@LB@ |||::| |||| ||:|||:| :|:|| ||@LB@ UGUUUU CCCU GUUUCUUU UCGUC CG@LB@3'-UUU...CGAGG AC GUA AC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.02 kcal/mol@LB@Hybridization Energy -19.2298 kcal/mol@LB@Unfolding Energy - mRNA 2.66644 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 165 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 63 |
0.003337 |
0.1851 |
b1453 |
ansP |
-14.01 |
0.047364 |
263 -- 293 |
1 -- 34 |
L-asparagine transporter |
|
_____________262_________________________________294\n_____________|___________________________________|\n5'-GUC...AAUGC________A__________C_________AUG___AAUCGCC-3'\n______________CCACGAAG_GGGG_UAUCA____AAAGCG___GGC\n______________||||:||:_||||_:||||____|||||:___|||\n______________GGUGUUUU_CCCC_GUAGU____UUUCGU___CCG\n3'-UUU...CCCGA________A____U_____UUCU______CA____-5'\n_____________|__________________________________|\n_____________35_________________________________1\n |
263 -- 269 |
28 -- 34 |
-31.7064 kcal/mol |
13.4305 kcal/mol |
4.26884 kcal/mol |
262 294@LB@ | |@LB@5'-GUC...AAUGC A C AUG AAUCGCC-3'@LB@ CCACGAAG GGGG UAUCA AAAGCG GGC@LB@ ||||:||: |||| :|||| |||||: |||@LB@ GGUGUUUU CCCC GUAGU UUUCGU CCG@LB@3'-UUU...CCCGA A U UUCU CA -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -31.7064 kcal/mol@LB@Unfolding Energy - mRNA 13.4305 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 263 -- 293@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 33 |
0.001538 |
0.1635 |
b4141 |
yjeH |
-13.95 |
0.048780 |
254 -- 275 |
1 -- 22 |
putative transporter |
|
_____________253____________________276\n_____________|______________________|\n5'-CAG...CUAUC_______UUAUU_____C____GUGUU...CUG-3'\n______________GACGUCA_____AGGCA_UGGC\n______________|||:|||_____|:|||_||||\n______________CUGUAGU_____UUCGU_ACCG\n3'-UUU...UACCC_______UUCUU_____C____-5'\n_____________|_____________________|\n_____________23____________________1\n |
254 -- 260 |
16 -- 22 |
-22.2624 kcal/mol |
6.77205 kcal/mol |
1.54023 kcal/mol |
253 276@LB@ | |@LB@5'-CAG...CUAUC UUAUU C GUGUU...CUG-3'@LB@ GACGUCA AGGCA UGGC@LB@ |||:||| |:||| ||||@LB@ CUGUAGU UUCGU ACCG@LB@3'-UUU...UACCC UUCUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -22.2624 kcal/mol@LB@Unfolding Energy - mRNA 6.77205 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 254 -- 275@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 16 -- 22@LB@ |
