121 |
0.008566 |
0.2484 |
b3466 |
yhhL |
-13.33 |
0.066537 |
119 -- 150 |
1 -- 32 |
DUF1145 family protein |
|
_____________118_________________________________151\n_____________|___________________________________|\n5'-GUU...UUCCA_____C___UCAUU_____________________GGGUC...UUA-3'\n______________GCAAA_UGG_____ACAUC_GGGAAAA__AGUGGC\n______________:||||_|||_____|||||_::|||||__||||||\n______________UGUUU_ACC_____UGUAG_UUCUUUU__UCACCG\n3'-UUU...CGAGG_____U___CC________U_______CG______-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
138 -- 144 |
9 -- 15 |
-23.4834 kcal/mol |
7.61069 kcal/mol |
2.53929 kcal/mol |
118 151@LB@ | |@LB@5'-GUU...UUCCA C UCAUU GGGUC...UUA-3'@LB@ GCAAA UGG ACAUC GGGAAAA AGUGGC@LB@ :|||| ||| ||||| ::||||| ||||||@LB@ UGUUU ACC UGUAG UUCUUUU UCACCG@LB@3'-UUU...CGAGG U CC U CG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -23.4834 kcal/mol@LB@Unfolding Energy - mRNA 7.61069 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 119 -- 150@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 9 -- 15@LB@ |
139 |
0.01022 |
0.2504 |
b3163 |
nlpI |
-13.31 |
0.067339 |
19 -- 42 |
4 -- 21 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
_____________18_______________________43\n_____________|________________________|\n5'-AGG...UCUGA___________GCGACU_______CUCAA...CAU-3'\n______________GCAUUAAAGAA______GAGCAGU\n______________:|||:||||||______:||||||\n______________UGUAGUUUCUU______UUCGUCA\n3'-UUU...ACCCC________________________CCG-5'\n_____________|________________________|\n_____________22_______________________3\n |
36 -- 42 |
4 -- 10 |
-18.4935 kcal/mol |
3.67449 kcal/mol |
1.51 kcal/mol |
18 43@LB@ | |@LB@5'-AGG...UCUGA GCGACU CUCAA...CAU-3'@LB@ GCAUUAAAGAA GAGCAGU@LB@ :|||:|||||| :||||||@LB@ UGUAGUUUCUU UUCGUCA@LB@3'-UUU...ACCCC CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -18.4935 kcal/mol@LB@Unfolding Energy - mRNA 3.67449 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 19 -- 42@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 4 -- 10@LB@ |
25 |
0.0009834 |
0.1361 |
b3733 |
atpG |
-13.27 |
0.068654 |
183 -- 205 |
1 -- 22 |
F1 sector of membrane-bound ATP synthase gamma subunit |
|
_____________182_____________________206\n_____________|_______________________|\n5'-GGC...CGCAA________________UCA____CGGCG...GUA-3'\n______________GGCAUUGAGGAGAAGC___UGGC\n______________|:|||::|:||:||||___||||\n______________CUGUAGUUUCUUUUCG___ACCG\n3'-UUU...UACCC________________UC_____-5'\n_____________|______________________|\n_____________23_____________________1\n |
192 -- 198 |
7 -- 13 |
-25.5897 kcal/mol |
10.7799 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-GGC...CGCAA UCA CGGCG...GUA-3'@LB@ GGCAUUGAGGAGAAGC UGGC@LB@ |:|||::|:||:|||| ||||@LB@ CUGUAGUUUCUUUUCG ACCG@LB@3'-UUU...UACCC UC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -25.5897 kcal/mol@LB@Unfolding Energy - mRNA 10.7799 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
104 |
0.006761 |
0.2281 |
b1671 |
ydhX |
-13.25 |
0.069212 |
145 -- 167 |
2 -- 25 |
putative 4Fe-4S ferridoxin-type protein; FNR Nar NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
b4072 |
_____________144_______________________168\n_____________|_________________________|\n5'-CAC...UUUCA___A_______U___U_________ACAGU...AGG-3'\n______________GGG_GAUGUCA_GGA__AG_GGUGG\n______________|||_||::|||_:||__||_:||||\n______________CCC_CUGUAGU_UCU__UC_UCACC\n3'-UUU...UUUUA___________U___UU__G_____G-5'\n_____________|_________________________|\n_____________26________________________1\n |
149 -- 155 |
16 -- 22 |
-23.0825 kcal/mol |
7.31216 kcal/mol |
2.51746 kcal/mol |
144 168@LB@ | |@LB@5'-CAC...UUUCA A U U ACAGU...AGG-3'@LB@ GGG GAUGUCA GGA AG GGUGG@LB@ ||| ||::||| :|| || :||||@LB@ CCC CUGUAGU UCU UC UCACC@LB@3'-UUU...UUUUA U UU G G-5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -23.0825 kcal/mol@LB@Unfolding Energy - mRNA 7.31216 kcal/mol@LB@Unfolding Energy - sRNA 2.51746 kcal/mol@LB@@LB@Position - mRNA 145 -- 167@LB@Position - sRNA 2 -- 25@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 16 -- 22@LB@ |
87 |
0.005508 |
0.2147 |
b0083 |
ftsL |
-13.20 |
0.070894 |
129 -- 146 |
1 -- 23 |
membrane bound cell division leucine zipper septum protein |
|
_____________128_____________________147\n_____________|_______________________|\n5'-CGU...AUGCC_______________________UGAGA...UGC-3'\n______________GGGC___GAAGAAGAG__GUGGC\n______________||:|___:|||||:||__|||||\n______________CCUG___UUUCUUUUC__CACCG\n3'-UUU...UUACC____UAG_________GU_____-5'\n_____________|______________________|\n_____________24_____________________1\n |
135 -- 141 |
8 -- 14 |
-20.4792 kcal/mol |
5.69631 kcal/mol |
1.57928 kcal/mol |
128 147@LB@ | |@LB@5'-CGU...AUGCC UGAGA...UGC-3'@LB@ GGGC GAAGAAGAG GUGGC@LB@ ||:| :|||||:|| |||||@LB@ CCUG UUUCUUUUC CACCG@LB@3'-UUU...UUACC UAG GU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.20 kcal/mol@LB@Hybridization Energy -20.4792 kcal/mol@LB@Unfolding Energy - mRNA 5.69631 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 129 -- 146@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 8 -- 14@LB@ |
103 |
0.006657 |
0.2268 |
b3617 |
kbl |
-13.19 |
0.071337 |
258 -- 276 |
7 -- 25 |
glycine C-acetyltransferase |
|
_____________257_________________277\n_____________|___________________|\n5'-UUU...CGGAA___UUGU____________GCAUU...AAG-3'\n______________GGG____UUAAAGAAGAGC\n______________|||____|:||||||:|||\n______________CCC____AGUUUCUUUUCG\n3'-UUU...UUUUA___CUGU____________UCACCG-5'\n_____________|___________________|\n_____________26__________________6\n |
270 -- 276 |
7 -- 13 |
-19.594 kcal/mol |
5.69693 kcal/mol |
0.70626 kcal/mol |
257 277@LB@ | |@LB@5'-UUU...CGGAA UUGU GCAUU...AAG-3'@LB@ GGG UUAAAGAAGAGC@LB@ ||| |:||||||:|||@LB@ CCC AGUUUCUUUUCG@LB@3'-UUU...UUUUA CUGU UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -19.594 kcal/mol@LB@Unfolding Energy - mRNA 5.69693 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 258 -- 276@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
57 |
0.003017 |
0.1789 |
b2950 |
yggR |
-13.19 |
0.071427 |
205 -- 223 |
1 -- 21 |
putative PilT family AAA+ ATPase |
|
_____________204___________________224\n_____________|_____________________|\n5'-UUC...UAUGA____G_______UU_______CCUUA...GAA-3'\n______________AUAU_GAAGAAA____GUGGC\n______________|:||_:||||||____|||||\n______________UGUA_UUUCUUU____CACCG\n3'-UUU...ACCCC____G_______UCGU_____-5'\n_____________|____________________|\n_____________22___________________1\n |
210 -- 216 |
10 -- 16 |
-17.7325 kcal/mol |
3.03326 kcal/mol |
1.51103 kcal/mol |
204 224@LB@ | |@LB@5'-UUC...UAUGA G UU CCUUA...GAA-3'@LB@ AUAU GAAGAAA GUGGC@LB@ |:|| :|||||| |||||@LB@ UGUA UUUCUUU CACCG@LB@3'-UUU...ACCCC G UCGU -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -17.7325 kcal/mol@LB@Unfolding Energy - mRNA 3.03326 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 205 -- 223@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 10 -- 16@LB@ |
93 |
0.00579 |
0.2147 |
b1256 |
ompW |
-13.14 |
0.073154 |
206 -- 220 |
1 -- 16 |
outer membrane protein W |
|
_____________205______________221\n_____________|________________|\n5'-GAC...AUGAA____UU__________GGCUU...CUG-3'\n______________AAAG__AA_CAGUGGC\n______________||||__||_|||||||\n______________UUUC__UU_GUCACCG\n3'-UUU...UGUAG____UU__C_______-5'\n_____________|_______________|\n_____________17______________1\n |
214 -- 220 |
1 -- 7 |
-16.0357 kcal/mol |
1.55126 kcal/mol |
1.34555 kcal/mol |
205 221@LB@ | |@LB@5'-GAC...AUGAA UU GGCUU...CUG-3'@LB@ AAAG AA CAGUGGC@LB@ |||| || |||||||@LB@ UUUC UU GUCACCG@LB@3'-UUU...UGUAG UU C -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -16.0357 kcal/mol@LB@Unfolding Energy - mRNA 1.55126 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 206 -- 220@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 1 -- 7@LB@ |
192 |
0.01406 |
0.2529 |
b4220 |
tamA |
-13.04 |
0.076745 |
183 -- 206 |
1 -- 23 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________182______________________207\n_____________|________________________|\n5'-CGC...AAAAA_______C_______AAU___C__UAUAU...GAC-3'\n______________GGAUAUU_AGGAGAA___GUG_GC\n______________|||:||:_|:||:||___|||_||\n______________CCUGUAG_UUCUUUU___CAC_CG\n3'-UUU...UUACC_______U_______CGU______-5'\n_____________|_______________________|\n_____________24______________________1\n |
191 -- 197 |
9 -- 15 |
-18.7095 kcal/mol |
4.09087 kcal/mol |
1.57928 kcal/mol |
182 207@LB@ | |@LB@5'-CGC...AAAAA C AAU C UAUAU...GAC-3'@LB@ GGAUAUU AGGAGAA GUG GC@LB@ |||:||: |:||:|| ||| ||@LB@ CCUGUAG UUCUUUU CAC CG@LB@3'-UUU...UUACC U CGU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -18.7095 kcal/mol@LB@Unfolding Energy - mRNA 4.09087 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 183 -- 206@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 9 -- 15@LB@ |
126 |
0.009112 |
0.2491 |
b0299 |
insF1 |
-12.99 |
0.078544 |
136 -- 158 |
1 -- 32 |
IS3 transposase B |
b0372 b0541 b1026 b2089 b3558 |
_____________135______________________________159\n_____________|________________________________|\n5'-ACU...AGCUG______C_________________________UAUCC...GUC-3'\n______________GCAGAA__GGGAU______GAAGAGC__UGGC\n______________:||:||__||||:______|||:|||__||||\n______________UGUUUU__CCCUG______CUUUUCG__ACCG\n3'-UUU...CGAGG______AC_____UAGUUU_______UC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
148 -- 154 |
7 -- 13 |
-22.7833 kcal/mol |
7.25293 kcal/mol |
2.53929 kcal/mol |
135 159@LB@ | |@LB@5'-ACU...AGCUG C UAUCC...GUC-3'@LB@ GCAGAA GGGAU GAAGAGC UGGC@LB@ :||:|| ||||: |||:||| ||||@LB@ UGUUUU CCCUG CUUUUCG ACCG@LB@3'-UUU...CGAGG AC UAGUUU UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -22.7833 kcal/mol@LB@Unfolding Energy - mRNA 7.25293 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 136 -- 158@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 7 -- 13@LB@ |