47 |
0.002271 |
0.1648 |
b3169 |
nusA |
-13.61 |
0.058009 |
55 -- 79 |
4 -- 28 |
transcription termination/antitermination L factor |
|
_____________54__________________________80\n_____________|___________________________|\n5'-UUG...UCGUA_____CA________UC__________AGACG...CAG-3'\n______________AAUGG__GGGCGUUA____AAAGCGGU\n______________|||||__||:|:|:|____|||||:||\n______________UUACC__CCUGUAGU____UUUCGUCA\n3'-UUU...GUGUU_______________UUCU________CCG-5'\n_____________|___________________________|\n_____________29__________________________3\n |
73 -- 79 |
4 -- 10 |
-21.8237 kcal/mol |
5.69952 kcal/mol |
2.51457 kcal/mol |
54 80@LB@ | |@LB@5'-UUG...UCGUA CA UC AGACG...CAG-3'@LB@ AAUGG GGGCGUUA AAAGCGGU@LB@ ||||| ||:|:|:| |||||:||@LB@ UUACC CCUGUAGU UUUCGUCA@LB@3'-UUU...GUGUU UUCU CCG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -21.8237 kcal/mol@LB@Unfolding Energy - mRNA 5.69952 kcal/mol@LB@Unfolding Energy - sRNA 2.51457 kcal/mol@LB@@LB@Position - mRNA 55 -- 79@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
180 |
0.01303 |
0.2504 |
b3487 |
yhiI |
-13.61 |
0.058128 |
230 -- 256 |
1 -- 27 |
putative membrane fusion protein (MFP) of efflux pump |
|
_____________229__________________________257\n_____________|____________________________|\n5'-UUU...GCGUG_____U________UUACU_________GGCUA...CGG-3'\n______________GUGGG__UGUCGGG_____GGCGGUGGC\n______________:||||__::||:::_____:||:|||||\n______________UACCC__GUAGUUU_____UCGUCACCG\n3'-UUU...UGUUU_____CU_______CUUU__________-5'\n_____________|___________________________|\n_____________28__________________________1\n |
250 -- 256 |
1 -- 7 |
-27.1902 kcal/mol |
11.0661 kcal/mol |
2.51867 kcal/mol |
229 257@LB@ | |@LB@5'-UUU...GCGUG U UUACU GGCUA...CGG-3'@LB@ GUGGG UGUCGGG GGCGGUGGC@LB@ :|||| ::||::: :||:|||||@LB@ UACCC GUAGUUU UCGUCACCG@LB@3'-UUU...UGUUU CU CUUU -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -27.1902 kcal/mol@LB@Unfolding Energy - mRNA 11.0661 kcal/mol@LB@Unfolding Energy - sRNA 2.51867 kcal/mol@LB@@LB@Position - mRNA 230 -- 256@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 1 -- 7@LB@ |
38 |
0.001836 |
0.1648 |
b3188 |
sfsB |
-13.60 |
0.058336 |
253 -- 274 |
1 -- 32 |
malPQ operon transcriptional activator |
|
_____________252______________________________275\n_____________|________________________________|\n5'-CGG...UUUGC______A___A_____________________GGCGG...UGA-3'\n______________GCAAGA_GGG_ACGUCAA__________UGGC\n______________:|||:|_|||_||:||||__________||||\n______________UGUUUU_CCC_UGUAGUU__________ACCG\n3'-UUU...CGAGG______A___C_______UCUUUUCGUC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
264 -- 270 |
15 -- 21 |
-21.5209 kcal/mol |
5.38314 kcal/mol |
2.53929 kcal/mol |
252 275@LB@ | |@LB@5'-CGG...UUUGC A A GGCGG...UGA-3'@LB@ GCAAGA GGG ACGUCAA UGGC@LB@ :|||:| ||| ||:|||| ||||@LB@ UGUUUU CCC UGUAGUU ACCG@LB@3'-UUU...CGAGG A C UCUUUUCGUC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -21.5209 kcal/mol@LB@Unfolding Energy - mRNA 5.38314 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 253 -- 274@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 15 -- 21@LB@ |
176 |
0.01279 |
0.2504 |
b3980 |
tufB |
-13.59 |
0.058494 |
200 -- 216 |
7 -- 22 |
translation elongation factor EF-Tu 2 |
b3339 |
_____________199_______________217\n_____________|_________________|\n5'-UCC...CAAUC______U__________UUGAA...CUA-3'\n______________GAUGUC_AAAGAAAAGU\n______________||::||_|||||||||:\n______________CUGUAG_UUUCUUUUCG\n3'-UUU...UACCC_________________UCACCG-5'\n_____________|_________________|\n_____________23________________6\n |
210 -- 216 |
7 -- 13 |
-16.0105 kcal/mol |
1.82662 kcal/mol |
0.590875 kcal/mol |
199 217@LB@ | |@LB@5'-UCC...CAAUC U UUGAA...CUA-3'@LB@ GAUGUC AAAGAAAAGU@LB@ ||::|| |||||||||:@LB@ CUGUAG UUUCUUUUCG@LB@3'-UUU...UACCC UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -16.0105 kcal/mol@LB@Unfolding Energy - mRNA 1.82662 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 200 -- 216@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 7 -- 13@LB@ |
160 |
0.0118 |
0.2504 |
b0078 |
ilvH |
-13.58 |
0.059018 |
151 -- 175 |
1 -- 25 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________150_______________________176\n_____________|_________________________|\n5'-GCC...UUCGC_______GAAU___UGAAAU_____UAAGC...UGA-3'\n______________GGGGGCG____GGA______GUGGU\n______________||||:|:____:||______||||:\n______________CCCCUGU____UCU______CACCG\n3'-UUU...UUUUA_______AGUU___UUUCGU_____-5'\n_____________|________________________|\n_____________26_______________________1\n |
151 -- 157 |
19 -- 25 |
-21.9405 kcal/mol |
5.84786 kcal/mol |
2.51748 kcal/mol |
150 176@LB@ | |@LB@5'-GCC...UUCGC GAAU UGAAAU UAAGC...UGA-3'@LB@ GGGGGCG GGA GUGGU@LB@ ||||:|: :|| ||||:@LB@ CCCCUGU UCU CACCG@LB@3'-UUU...UUUUA AGUU UUUCGU -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -21.9405 kcal/mol@LB@Unfolding Energy - mRNA 5.84786 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 151 -- 175@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 19 -- 25@LB@ |
96 |
0.005909 |
0.216 |
b0511 |
ybbW |
-13.57 |
0.059054 |
201 -- 236 |
1 -- 27 |
putative allantoin transporter |
|
_____________200___________________________________237\n_____________|_____________________________________|\n5'-UGG...GAUUU____A_____________ACUAUUCC____AC_C___UAUAG...UUA-3'\n______________AUGG__ACAUCAGAGAAA________AGCA__G_GGC\n______________||||__||||||:|||||________||||__|_|||\n______________UACC__UGUAGUUUCUUU________UCGU__C_CCG\n3'-UUU...UGUUU____CC___________________________A___-5'\n_____________|____________________________________|\n_____________28___________________________________1\n |
211 -- 217 |
10 -- 16 |
-23.7564 kcal/mol |
7.66376 kcal/mol |
2.51867 kcal/mol |
200 237@LB@ | |@LB@5'-UGG...GAUUU A ACUAUUCC AC C UAUAG...UUA-3'@LB@ AUGG ACAUCAGAGAAA AGCA G GGC@LB@ |||| ||||||:||||| |||| | |||@LB@ UACC UGUAGUUUCUUU UCGU C CCG@LB@3'-UUU...UGUUU CC A -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -23.7564 kcal/mol@LB@Unfolding Energy - mRNA 7.66376 kcal/mol@LB@Unfolding Energy - sRNA 2.51867 kcal/mol@LB@@LB@Position - mRNA 201 -- 236@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 10 -- 16@LB@ |
72 |
0.004007 |
0.1953 |
b2175 |
mepS |
-13.55 |
0.059767 |
177 -- 194 |
6 -- 23 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________176________________195\n_____________|__________________|\n5'-CAA...GUUAA____U__________A__AACAA...CAA-3'\n______________GGAC_UCAAGGGAAA_CA\n______________||||_||||:|:|||_||\n______________CCUG_AGUUUCUUUU_GU\n3'-UUU...UUACC____U__________C__CACCG-5'\n_____________|__________________|\n_____________24_________________5\n |
185 -- 191 |
9 -- 15 |
-17.1277 kcal/mol |
2.97845 kcal/mol |
0.599171 kcal/mol |
176 195@LB@ | |@LB@5'-CAA...GUUAA U A AACAA...CAA-3'@LB@ GGAC UCAAGGGAAA CA@LB@ |||| ||||:|:||| ||@LB@ CCUG AGUUUCUUUU GU@LB@3'-UUU...UUACC U C CACCG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.55 kcal/mol@LB@Hybridization Energy -17.1277 kcal/mol@LB@Unfolding Energy - mRNA 2.97845 kcal/mol@LB@Unfolding Energy - sRNA 0.599171 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 9 -- 15@LB@ |
109 |
0.007372 |
0.2348 |
b3701 |
dnaN |
-13.44 |
0.063163 |
149 -- 162 |
9 -- 22 |
DNA polymerase III beta subunit |
|
_____________148____________163\n_____________|______________|\n5'-GGC...GCCAC______________UUUUU...UGC-3'\n______________GAUAUCAAAGAAGA\n______________||:|||||||||:|\n______________CUGUAGUUUCUUUU\n3'-UUU...UACCC______________CGUCACCG-5'\n_____________|______________|\n_____________23_____________8\n |
156 -- 162 |
9 -- 15 |
-16.0152 kcal/mol |
2.0875 kcal/mol |
0.488786 kcal/mol |
148 163@LB@ | |@LB@5'-GGC...GCCAC UUUUU...UGC-3'@LB@ GAUAUCAAAGAAGA@LB@ ||:|||||||||:|@LB@ CUGUAGUUUCUUUU@LB@3'-UUU...UACCC CGUCACCG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -13.44 kcal/mol@LB@Hybridization Energy -16.0152 kcal/mol@LB@Unfolding Energy - mRNA 2.0875 kcal/mol@LB@Unfolding Energy - sRNA 0.488786 kcal/mol@LB@@LB@Position - mRNA 149 -- 162@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 9 -- 15@LB@ |
169 |
0.01228 |
0.2504 |
b3386 |
rpe |
-13.36 |
0.065831 |
171 -- 203 |
3 -- 33 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________170_______________________________204\n_____________|_________________________________|\n5'-CGC...UCACC_______AAAUAAUUC______________A__AAACA...UGC-3'\n______________CGCGAAA_________UCAAGGAGAAGCGG_UG\n______________|:|:|||_________||||:||:||||:|_||\n______________GUGUUUU_________AGUUUCUUUUCGUC_AC\n3'-UUU...CCGAG_______ACCCCUGU__________________CG-5'\n_____________|_________________________________|\n_____________34________________________________2\n |
194 -- 200 |
5 -- 11 |
-23.2607 kcal/mol |
6.82691 kcal/mol |
3.0786 kcal/mol |
170 204@LB@ | |@LB@5'-CGC...UCACC AAAUAAUUC A AAACA...UGC-3'@LB@ CGCGAAA UCAAGGAGAAGCGG UG@LB@ |:|:||| ||||:||:||||:| ||@LB@ GUGUUUU AGUUUCUUUUCGUC AC@LB@3'-UUU...CCGAG ACCCCUGU CG-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -23.2607 kcal/mol@LB@Unfolding Energy - mRNA 6.82691 kcal/mol@LB@Unfolding Energy - sRNA 3.0786 kcal/mol@LB@@LB@Position - mRNA 171 -- 203@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
94 |
0.005808 |
0.2147 |
b0652 |
gltL |
-13.33 |
0.066498 |
266 -- 292 |
1 -- 31 |
glutamate/aspartate ABC transporter ATPase |
|
_____________265_____________________________293\n_____________|_______________________________|\n5'-CUC...UCAAC_______AAAA________C___________GGUUUGCG-3'\n______________CGAAGUG________AAGG_GAAGUGGUGGU\n______________|:||:||________||:|_:|||::||||:\n______________GUUUUAC________UUUC_UUUCGUCACCG\n3'-UUU...GAGGU_______CCCUGUAG____U___________-5'\n_____________|______________________________|\n_____________32_____________________________1\n |
286 -- 292 |
1 -- 7 |
-20.9442 kcal/mol |
5.07032 kcal/mol |
2.53929 kcal/mol |
265 293@LB@ | |@LB@5'-CUC...UCAAC AAAA C GGUUUGCG-3'@LB@ CGAAGUG AAGG GAAGUGGUGGU@LB@ |:||:|| ||:| :|||::||||:@LB@ GUUUUAC UUUC UUUCGUCACCG@LB@3'-UUU...GAGGU CCCUGUAG U -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -13.33 kcal/mol@LB@Hybridization Energy -20.9442 kcal/mol@LB@Unfolding Energy - mRNA 5.07032 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 266 -- 292@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |