184 |
0.0132 |
0.2504 |
b2897 |
sdhE |
-10.91 |
0.194803 |
203 -- 220 |
7 -- 23 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________202________________221\n_____________|__________________|\n5'-GUA...AAGAU_________CAAC_____CCGCA...ACA-3'\n______________GGACAUUAA____AAAGC\n______________||||||:||____|||||\n______________CCUGUAGUU____UUUCG\n3'-UUU...UUACC_________UCU______UCACCG-5'\n_____________|__________________|\n_____________24_________________6\n |
205 -- 211 |
15 -- 21 |
-14.6885 kcal/mol |
3.17611 kcal/mol |
0.599063 kcal/mol |
202 221@LB@ | |@LB@5'-GUA...AAGAU CAAC CCGCA...ACA-3'@LB@ GGACAUUAA AAAGC@LB@ ||||||:|| |||||@LB@ CCUGUAGUU UUUCG@LB@3'-UUU...UUACC UCU UCACCG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -14.6885 kcal/mol@LB@Unfolding Energy - mRNA 3.17611 kcal/mol@LB@Unfolding Energy - sRNA 0.599063 kcal/mol@LB@@LB@Position - mRNA 203 -- 220@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 15 -- 21@LB@ |
65 |
0.00343 |
0.1851 |
b4363 |
yjjB |
-10.89 |
0.196296 |
181 -- 193 |
20 -- 32 |
DUF3815 family inner membrane protein |
|
_____________180___________194\n_____________|_____________|\n5'-ACU...CACUG____UU_______UACGC...GGG-3'\n______________ACGA__UGGGGGC\n______________||:|__|||||:|\n______________UGUU__ACCCCUG\n3'-UUU...CGAGG____UU_______UAGUU...CCG-5'\n_____________|_____________|\n_____________33____________19\n |
187 -- 193 |
20 -- 26 |
-17.0561 kcal/mol |
4.01516 kcal/mol |
2.14699 kcal/mol |
180 194@LB@ | |@LB@5'-ACU...CACUG UU UACGC...GGG-3'@LB@ ACGA UGGGGGC@LB@ ||:| |||||:|@LB@ UGUU ACCCCUG@LB@3'-UUU...CGAGG UU UAGUU...CCG-5'@LB@ | |@LB@ 33 19@LB@@LB@@LB@Energy -10.89 kcal/mol@LB@Hybridization Energy -17.0561 kcal/mol@LB@Unfolding Energy - mRNA 4.01516 kcal/mol@LB@Unfolding Energy - sRNA 2.14699 kcal/mol@LB@@LB@Position - mRNA 181 -- 193@LB@Position - sRNA 20 -- 32@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 20 -- 26@LB@ |
40 |
0.001973 |
0.1648 |
b1823 |
cspC |
-10.89 |
0.196769 |
199 -- 231 |
1 -- 29 |
stress protein member of the CspA-family |
|
_____________198_______________________________232\n_____________|_________________________________|\n5'-UAU...UUUUC______CAA_G________UC____UA______UCAAC...UCU-3'\n______________AAAUGG___A_AUUAAAGG__AGGU__AGUGGU\n______________||||||___|_||:||||:__|:|:__|||||:\n______________UUUACC___U_UAGUUUCU__UUCG__UCACCG\n3'-UUU...GGUGU______CC__G________U_____________-5'\n_____________|________________________________|\n_____________30_______________________________1\n |
210 -- 216 |
13 -- 19 |
-20.1954 kcal/mol |
6.78842 kcal/mol |
2.51907 kcal/mol |
198 232@LB@ | |@LB@5'-UAU...UUUUC CAA G UC UA UCAAC...UCU-3'@LB@ AAAUGG A AUUAAAGG AGGU AGUGGU@LB@ |||||| | ||:||||: |:|: |||||:@LB@ UUUACC U UAGUUUCU UUCG UCACCG@LB@3'-UUU...GGUGU CC G U -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -10.89 kcal/mol@LB@Hybridization Energy -20.1954 kcal/mol@LB@Unfolding Energy - mRNA 6.78842 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 199 -- 231@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 13 -- 19@LB@ |
151 |
0.01116 |
0.2504 |
b0903 |
pflB |
-10.70 |
0.211701 |
140 -- 166 |
4 -- 34 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________139_____________________________167\n_____________|_______________________________|\n5'-CAC...GACCA____U______U__________UAC______AAAUA...ACU-3'\n______________CCAU__AAUGG___UGUCGAAG____GCAGU\n______________|||:__|||||___::||:|||____|||||\n______________GGUG__UUACC___GUAGUUUC____CGUCA\n3'-UUU...CCCGA____UU_____CCU________UUUU_____CCG-5'\n_____________|_______________________________|\n_____________35______________________________3\n |
152 -- 158 |
13 -- 19 |
-21.5315 kcal/mol |
6.56187 kcal/mol |
4.26884 kcal/mol |
139 167@LB@ | |@LB@5'-CAC...GACCA U U UAC AAAUA...ACU-3'@LB@ CCAU AAUGG UGUCGAAG GCAGU@LB@ |||: ||||| ::||:||| |||||@LB@ GGUG UUACC GUAGUUUC CGUCA@LB@3'-UUU...CCCGA UU CCU UUUU CCG-5'@LB@ | |@LB@ 35 3@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -21.5315 kcal/mol@LB@Unfolding Energy - mRNA 6.56187 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 140 -- 166@LB@Position - sRNA 4 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 13 -- 19@LB@ |
177 |
0.01288 |
0.2504 |
b3455 |
livG |
-10.61 |
0.218983 |
178 -- 198 |
5 -- 24 |
branched-chain amino acid ABC transporter ATPase |
|
_____________177___________________199\n_____________|_____________________|\n5'-AUG...AAAAC__C___GCG____________GCAUG...UCG-3'\n______________GG_GCA___AAAGGAGAGCAG\n______________||_:||___||||:|:|||||\n______________CC_UGU___UUUCUUUUCGUC\n3'-UUU...UUUAC__C___AG_____________ACCG-5'\n_____________|_____________________|\n_____________25____________________4\n |
192 -- 198 |
5 -- 11 |
-19.5574 kcal/mol |
6.51739 kcal/mol |
2.42705 kcal/mol |
177 199@LB@ | |@LB@5'-AUG...AAAAC C GCG GCAUG...UCG-3'@LB@ GG GCA AAAGGAGAGCAG@LB@ || :|| ||||:|:|||||@LB@ CC UGU UUUCUUUUCGUC@LB@3'-UUU...UUUAC C AG ACCG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -19.5574 kcal/mol@LB@Unfolding Energy - mRNA 6.51739 kcal/mol@LB@Unfolding Energy - sRNA 2.42705 kcal/mol@LB@@LB@Position - mRNA 178 -- 198@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
134 |
0.009704 |
0.2504 |
b1444 |
patD |
-10.55 |
0.224369 |
279 -- 297 |
10 -- 25 |
gamma-aminobutyraldehyde dehydrogenase |
|
_____________278_________________298\n_____________|___________________|\n5'-UCG...CAACG_________UUACU_____UUG-3'\n______________GGGGACGUU_____GGAAA\n______________||||||:|:_____:||||\n______________CCCCUGUAG_____UCUUU\n3'-UUU...UUUUA_________UU________UCGUC...CCG-5'\n_____________|___________________|\n_____________26__________________9\n |
281 -- 287 |
17 -- 23 |
-18.1658 kcal/mol |
6.94606 kcal/mol |
0.670388 kcal/mol |
278 298@LB@ | |@LB@5'-UCG...CAACG UUACU UUG-3'@LB@ GGGGACGUU GGAAA@LB@ ||||||:|: :||||@LB@ CCCCUGUAG UCUUU@LB@3'-UUU...UUUUA UU UCGUC...CCG-5'@LB@ | |@LB@ 26 9@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -18.1658 kcal/mol@LB@Unfolding Energy - mRNA 6.94606 kcal/mol@LB@Unfolding Energy - sRNA 0.670388 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 10 -- 25@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 17 -- 23@LB@ |
163 |
0.01202 |
0.2504 |
b1482 |
osmC |
-10.53 |
0.225653 |
203 -- 226 |
1 -- 22 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________202_______________________227\n_____________|_________________________|\n5'-UAG...ACAAU___A___CAU_________CA____ACACU...CGU-3'\n______________GAC_AUC___AAGAAAGGU___GGC\n______________|||_|||___||||||:|:___|||\n______________CUG_UAG___UUCUUUUCG___CCG\n3'-UUU...UACCC_______U___________UCA___-5'\n_____________|________________________|\n_____________23_______________________1\n |
215 -- 221 |
7 -- 13 |
-17.1921 kcal/mol |
5.11752 kcal/mol |
1.54023 kcal/mol |
202 227@LB@ | |@LB@5'-UAG...ACAAU A CAU CA ACACU...CGU-3'@LB@ GAC AUC AAGAAAGGU GGC@LB@ ||| ||| ||||||:|: |||@LB@ CUG UAG UUCUUUUCG CCG@LB@3'-UUU...UACCC U UCA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -17.1921 kcal/mol@LB@Unfolding Energy - mRNA 5.11752 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 7 -- 13@LB@ |
102 |
0.006464 |
0.2224 |
b3785 |
wzzE |
-10.51 |
0.228012 |
146 -- 168 |
1 -- 22 |
Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
|
_____________145_____________________169\n_____________|_______________________|\n5'-GCU...ACGCA___UG__U_____UC________AGCCC...UUA-3'\n______________GAC__CG_AGAAA__GUGGUGGC\n______________|||__|:_|||||__|::|||||\n______________CUG__GU_UCUUU__CGUCACCG\n3'-UUU...UACCC___UA__U_____U_________-5'\n_____________|______________________|\n_____________23_____________________1\n |
162 -- 168 |
1 -- 7 |
-19.8866 kcal/mol |
7.83936 kcal/mol |
1.54023 kcal/mol |
145 169@LB@ | |@LB@5'-GCU...ACGCA UG U UC AGCCC...UUA-3'@LB@ GAC CG AGAAA GUGGUGGC@LB@ ||| |: ||||| |::|||||@LB@ CUG GU UCUUU CGUCACCG@LB@3'-UUU...UACCC UA U U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -19.8866 kcal/mol@LB@Unfolding Energy - mRNA 7.83936 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 146 -- 168@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 1 -- 7@LB@ |
172 |
0.01269 |
0.2504 |
b0571 |
cusR |
-10.48 |
0.230388 |
14 -- 48 |
1 -- 33 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________13___________________________________49\n_____________|____________________________________|\n5'-AGC...GGCCA__________CA__A___UAC__________UA___UCAUA...GGC-3'\n______________CACAAAAUGG__GA_GUU___AAGGAGA_CA__GGC\n______________||||||||||__||_:|:___|||:|:|_||__|||\n______________GUGUUUUACC__CU_UAG___UUCUUUU_GU__CCG\n3'-UUU...CCGAG__________C___G___U_________C__CA___-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
35 -- 41 |
9 -- 15 |
-22.821 kcal/mol |
9.26274 kcal/mol |
3.07861 kcal/mol |
13 49@LB@ | |@LB@5'-AGC...GGCCA CA A UAC UA UCAUA...GGC-3'@LB@ CACAAAAUGG GA GUU AAGGAGA CA GGC@LB@ |||||||||| || :|: |||:|:| || |||@LB@ GUGUUUUACC CU UAG UUCUUUU GU CCG@LB@3'-UUU...CCGAG C G U C CA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -22.821 kcal/mol@LB@Unfolding Energy - mRNA 9.26274 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 14 -- 48@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
175 |
0.01275 |
0.2504 |
b3057 |
bacA |
-10.43 |
0.234919 |
238 -- 261 |
5 -- 26 |
undecaprenyl pyrophosphate phosphatase |
|
_____________237______________________262\n_____________|________________________|\n5'-UUC...AAUAU____U_UG_________UU_A___AAUUU...UUG-3'\n______________UGGG_G__GUCGAAGGA__G_CAG\n______________||||_|__:||:|||:|__|_|||\n______________ACCC_C__UAGUUUCUU__C_GUC\n3'-UUU...GUUUU______UG_________UU_____ACCG-5'\n_____________|________________________|\n_____________27_______________________4\n |
248 -- 254 |
11 -- 17 |
-20.3624 kcal/mol |
7.43347 kcal/mol |
2.50108 kcal/mol |
237 262@LB@ | |@LB@5'-UUC...AAUAU U UG UU A AAUUU...UUG-3'@LB@ UGGG G GUCGAAGGA G CAG@LB@ |||| | :||:|||:| | |||@LB@ ACCC C UAGUUUCUU C GUC@LB@3'-UUU...GUUUU UG UU ACCG-5'@LB@ | |@LB@ 27 4@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -20.3624 kcal/mol@LB@Unfolding Energy - mRNA 7.43347 kcal/mol@LB@Unfolding Energy - sRNA 2.50108 kcal/mol@LB@@LB@Position - mRNA 238 -- 261@LB@Position - sRNA 5 -- 26@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 11 -- 17@LB@ |