| 15 |
0.0006403 |
0.1243 |
b0178 |
skp |
-17.37 |
0.006465 |
90 -- 106 |
1 -- 17 |
periplasmic chaperone |
|
_____________89________________107\n_____________|_________________|\n5'-CUC...CUCCA________U________AGUGU...UCC-3'\n______________CAAAGGAA_GUAGUGGU\n______________|||||:||_|:|||||:\n______________GUUUCUUU_CGUCACCG\n3'-UUU...CUGUA________U________-5'\n_____________|________________|\n_____________18_______________1\n |
100 -- 106 |
1 -- 7 |
-21.6829 kcal/mol |
2.87621 kcal/mol |
1.43853 kcal/mol |
89 107@LB@ | |@LB@5'-CUC...CUCCA U AGUGU...UCC-3'@LB@ CAAAGGAA GUAGUGGU@LB@ |||||:|| |:|||||:@LB@ GUUUCUUU CGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -17.37 kcal/mol@LB@Hybridization Energy -21.6829 kcal/mol@LB@Unfolding Energy - mRNA 2.87621 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 90 -- 106@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 4 |
1.99e-05 |
0.01653 |
b4255 |
rraB |
-17.36 |
0.006479 |
180 -- 205 |
1 -- 23 |
protein inhibitor of RNase E |
|
_____________179________________________206\n_____________|__________________________|\n5'-GAG...CGGCA_________GA____U____CA____AAACC...CCA-3'\n______________GGACAUUAA__GGAA_GAGC__UGGC\n______________||||||:||__:|||_:|||__||||\n______________CCUGUAGUU__UCUU_UUCG__ACCG\n3'-UUU...UUACC____________________UC____-5'\n_____________|_________________________|\n_____________24________________________1\n |
182 -- 188 |
15 -- 21 |
-24.3176 kcal/mol |
5.37332 kcal/mol |
1.57928 kcal/mol |
179 206@LB@ | |@LB@5'-GAG...CGGCA GA U CA AAACC...CCA-3'@LB@ GGACAUUAA GGAA GAGC UGGC@LB@ ||||||:|| :||| :||| ||||@LB@ CCUGUAGUU UCUU UUCG ACCG@LB@3'-UUU...UUACC UC -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -17.36 kcal/mol@LB@Hybridization Energy -24.3176 kcal/mol@LB@Unfolding Energy - mRNA 5.37332 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 118 |
0.008241 |
0.2451 |
b3394 |
hofN |
-17.25 |
0.007000 |
1 -- 22 |
2 -- 26 |
DNA catabolic putative fimbrial assembly protein |
|
______________1________________________23\n______________|________________________|\n___________5'-_____________CU__________GGAUG...CCG-3'\n______________UGGGGGCG_CAAA____GGCGGUGG\n______________|||||:|:_||||____:||:||||\n______________ACCCCUGU_GUUU____UCGUCACC\n3'-UUU...GUUUU________A____CUUU________G-5'\n_____________|_________________________|\n_____________27________________________1\n |
16 -- 22 |
2 -- 8 |
-29.7277 kcal/mol |
9.95926 kcal/mol |
2.5184 kcal/mol |
1 23@LB@ | |@LB@ 5'- CU GGAUG...CCG-3'@LB@ UGGGGGCG CAAA GGCGGUGG@LB@ |||||:|: |||| :||:||||@LB@ ACCCCUGU GUUU UCGUCACC@LB@3'-UUU...GUUUU A CUUU G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -17.25 kcal/mol@LB@Hybridization Energy -29.7277 kcal/mol@LB@Unfolding Energy - mRNA 9.95926 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 1 -- 22@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 56 |
0.002838 |
0.1778 |
b3371 |
frlB |
-17.11 |
0.007704 |
196 -- 228 |
2 -- 32 |
fructoselysine-6-P-deglycase |
|
_____________195________________________________229\n_____________|__________________________________|\n5'-ACU...AGAAA________UU_________U________CC____ACUUU...ACG-3'\n______________AUAAAAUG__GGAUAUUGA__AAAAGCA__GUGG\n______________|:||||||__|||:||::|__|||||||__||||\n______________UGUUUUAC__CCUGUAGUU__UUUUCGU__CACC\n3'-UUU...CGAGG________C__________UC_____________G-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
216 -- 222 |
6 -- 12 |
-25.2618 kcal/mol |
5.61622 kcal/mol |
2.53929 kcal/mol |
195 229@LB@ | |@LB@5'-ACU...AGAAA UU U CC ACUUU...ACG-3'@LB@ AUAAAAUG GGAUAUUGA AAAAGCA GUGG@LB@ |:|||||| |||:||::| ||||||| ||||@LB@ UGUUUUAC CCUGUAGUU UUUUCGU CACC@LB@3'-UUU...CGAGG C UC G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -25.2618 kcal/mol@LB@Unfolding Energy - mRNA 5.61622 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 228@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 58 |
0.00302 |
0.1789 |
b0556 |
rzpD |
-16.79 |
0.009474 |
64 -- 103 |
3 -- 36 |
DLP12 prophage; putative murein endopeptidase |
|
_____________63_________________________________________104\n_____________|__________________________________________|\n5'-CGC...CGCUU___________AAACCA___C___________C_____U___AUCAG...ACA-3'\n______________CUUCGCAAAAU______GGG_GAUAUCAAAGG___GCA_GUG\n______________||:|:||||||______|||_||:|||||||:___|||_|||\n______________GAGGUGUUUUA______CCC_CUGUAGUUUCU___CGU_CAC\n3'-UUU...UACCC________________________________UUU_______CG-5'\n_____________|__________________________________________|\n_____________37_________________________________________2\n |
89 -- 95 |
12 -- 18 |
-34.1904 kcal/mol |
10.724 kcal/mol |
6.67685 kcal/mol |
63 104@LB@ | |@LB@5'-CGC...CGCUU AAACCA C C U AUCAG...ACA-3'@LB@ CUUCGCAAAAU GGG GAUAUCAAAGG GCA GUG@LB@ ||:|:|||||| ||| ||:|||||||: ||| |||@LB@ GAGGUGUUUUA CCC CUGUAGUUUCU CGU CAC@LB@3'-UUU...UACCC UUU CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -34.1904 kcal/mol@LB@Unfolding Energy - mRNA 10.724 kcal/mol@LB@Unfolding Energy - sRNA 6.67685 kcal/mol@LB@@LB@Position - mRNA 64 -- 103@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 12 |
0.0004023 |
0.1087 |
b3176 |
glmM |
-16.74 |
0.009770 |
131 -- 153 |
1 -- 22 |
phosphoglucosamine mutase |
|
_____________130_____________________154\n_____________|_______________________|\n5'-GUU...UUCAU_____________CC____AA__GAUGC...CGG-3'\n______________GACGUCAAAGAAA__GUAG__GC\n______________|||:|||||||||__|:||__||\n______________CUGUAGUUUCUUU__CGUC__CG\n3'-UUU...UACCC_____________U_____AC__-5'\n_____________|______________________|\n_____________23_____________________1\n |
137 -- 143 |
10 -- 16 |
-21.6768 kcal/mol |
3.39473 kcal/mol |
1.54023 kcal/mol |
130 154@LB@ | |@LB@5'-GUU...UUCAU CC AA GAUGC...CGG-3'@LB@ GACGUCAAAGAAA GUAG GC@LB@ |||:||||||||| |:|| ||@LB@ CUGUAGUUUCUUU CGUC CG@LB@3'-UUU...UACCC U AC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -16.74 kcal/mol@LB@Hybridization Energy -21.6768 kcal/mol@LB@Unfolding Energy - mRNA 3.39473 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 131 -- 153@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 8 |
0.0001267 |
0.05555 |
b2697 |
alaS |
-16.66 |
0.010303 |
247 -- 274 |
1 -- 35 |
alanyl-tRNA synthetase |
|
_____________246_________________________________275\n_____________|___________________________________|\n5'-CCA...CUUUU_______UAA______________________U__CAGCA...ACG-3'\n______________UCCAUAG____GGGACAUCA______GGUAGU_GC\n______________||||:|:____|||||||||______:|:|||_||\n______________AGGUGUU____CCCUGUAGU______UCGUCA_CG\n3'-UUU...ACCCG_______UUAC_________UUCUUU______C__-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
259 -- 265 |
16 -- 22 |
-29.5579 kcal/mol |
7.86268 kcal/mol |
5.03645 kcal/mol |
246 275@LB@ | |@LB@5'-CCA...CUUUU UAA U CAGCA...ACG-3'@LB@ UCCAUAG GGGACAUCA GGUAGU GC@LB@ ||||:|: ||||||||| :|:||| ||@LB@ AGGUGUU CCCUGUAGU UCGUCA CG@LB@3'-UUU...ACCCG UUAC UUCUUU C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.5579 kcal/mol@LB@Unfolding Energy - mRNA 7.86268 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 247 -- 274@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 16 |
0.0006527 |
0.1243 |
b2563 |
acpS |
-16.60 |
0.010715 |
145 -- 164 |
1 -- 23 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________144_____________________165\n_____________|_______________________|\n5'-GCC...UGACC______G_____U__________AGAAA...GCG-3'\n______________GGAC_U_AAAGA___GCGGUGGC\n______________||||_|_|||||___||:|||||\n______________CCUG_A_UUUCU___CGUCACCG\n3'-UUU...UUACC____U_G_____UUU________-5'\n_____________|______________________|\n_____________24_____________________1\n |
158 -- 164 |
1 -- 7 |
-25.7246 kcal/mol |
7.54829 kcal/mol |
1.57928 kcal/mol |
144 165@LB@ | |@LB@5'-GCC...UGACC G U AGAAA...GCG-3'@LB@ GGAC U AAAGA GCGGUGGC@LB@ |||| | ||||| ||:|||||@LB@ CCUG A UUUCU CGUCACCG@LB@3'-UUU...UUACC U G UUU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -25.7246 kcal/mol@LB@Unfolding Energy - mRNA 7.54829 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 145 -- 164@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 85 |
0.0054 |
0.2147 |
b4461 |
yfjD |
-16.56 |
0.010978 |
60 -- 89 |
2 -- 27 |
UPF0053 family inner membrane protein |
|
_____________59______________________________90\n_____________|_______________________________|\n5'-GAA...CUGCU___________AUCAU______U________ACGCC...UCA-3'\n______________GUGGGGACAUU_____GAAGGA_GGC_GUGG\n______________:|||||||||:_____:|||:|_:||_||||\n______________UACCCCUGUAG_____UUUCUU_UCG_CACC\n3'-UUU...UGUUU______________________U___U____G-5'\n_____________|_______________________________|\n_____________28______________________________1\n |
64 -- 70 |
17 -- 23 |
-31.7913 kcal/mol |
12.7137 kcal/mol |
2.51866 kcal/mol |
59 90@LB@ | |@LB@5'-GAA...CUGCU AUCAU U ACGCC...UCA-3'@LB@ GUGGGGACAUU GAAGGA GGC GUGG@LB@ :|||||||||: :|||:| :|| ||||@LB@ UACCCCUGUAG UUUCUU UCG CACC@LB@3'-UUU...UGUUU U U G-5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -31.7913 kcal/mol@LB@Unfolding Energy - mRNA 12.7137 kcal/mol@LB@Unfolding Energy - sRNA 2.51866 kcal/mol@LB@@LB@Position - mRNA 60 -- 89@LB@Position - sRNA 2 -- 27@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 3 |
3.973e-07 |
0.0004647 |
b0081 |
mraZ |
-16.47 |
0.011640 |
172 -- 200 |
1 -- 32 |
RsmH methytransferase inhibitor |
|
_____________171______________________________201\n_____________|________________________________|\n5'-GAU...GUGGG__________A___A_____U___________AUGUU...AAA-3'\n______________GCAAAGUGGG_AUA__GGGG_GAGGC__UGGC\n______________:||||:||||_|:|__:::|_:|:||__||||\n______________UGUUUUACCC_UGU__UUUC_UUUCG__ACCG\n3'-UUU...CGAGG__________C___AG____U_____UC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
175 -- 181 |
23 -- 29 |
-28.2943 kcal/mol |
9.28897 kcal/mol |
2.53929 kcal/mol |
171 201@LB@ | |@LB@5'-GAU...GUGGG A A U AUGUU...AAA-3'@LB@ GCAAAGUGGG AUA GGGG GAGGC UGGC@LB@ :||||:|||| |:| :::| :|:|| ||||@LB@ UGUUUUACCC UGU UUUC UUUCG ACCG@LB@3'-UUU...CGAGG C AG U UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -16.47 kcal/mol@LB@Hybridization Energy -28.2943 kcal/mol@LB@Unfolding Energy - mRNA 9.28897 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 172 -- 200@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 23 -- 29@LB@ |
