| 16 |
0.0007379 |
0.1438 |
b3838 |
tatB |
-12.16 |
0.040760 |
131 -- 190 |
7 -- 68 |
TatABCE protein translocation system subunit |
|
_____________130___________________________________________________________________191\n_____________|_____________________________________________________________________|\n5'-UCG...AAGCA_GC___UAC_______GAA_____________AA_________CGC______GCC__________A___GGUGU...CGG-3'\n______________G__GGA___GAAUCAG___CA_______GGCU__AACAGAAGA___GAAG_C____ACGAUAAAG_GCA\n______________|__|||___:||||||___||_______|||:__|||||||:|___:||:_|____||:||||||_|||\n______________C__CCU___UUUAGUC___GU_______CCGG__UUGUCUUUU___UUUU_G____UGUUAUUUC_CGU\n3'-UUU...AUAUA_AA_____________ACC__UACGUUA____G__________A______A_ACAC_____________AUAUUG-5'\n_____________|_____________________________________________________________________|\n_____________69____________________________________________________________________6\n |
180 -- 186 |
10 -- 16 |
-35.021 kcal/mol |
10.7079 kcal/mol |
12.1575 kcal/mol |
130 191@LB@ | |@LB@5'-UCG...AAGCA GC UAC GAA AA CGC GCC A GGUGU...CGG-3'@LB@ G GGA GAAUCAG CA GGCU AACAGAAGA GAAG C ACGAUAAAG GCA@LB@ | ||| :|||||| || |||: |||||||:| :||: | ||:|||||| |||@LB@ C CCU UUUAGUC GU CCGG UUGUCUUUU UUUU G UGUUAUUUC CGU@LB@3'-UUU...AUAUA AA ACC UACGUUA G A A ACAC AUAUUG-5'@LB@ | |@LB@ 69 6@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -35.021 kcal/mol@LB@Unfolding Energy - mRNA 10.7079 kcal/mol@LB@Unfolding Energy - sRNA 12.1575 kcal/mol@LB@@LB@Position - mRNA 131 -- 190@LB@Position - sRNA 7 -- 68@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 37 |
0.002433 |
0.2088 |
b2825 |
ppdB |
-7.88 |
0.305516 |
133 -- 146 |
40 -- 54 |
putative prepilin peptidase-dependent protein |
|
_____________132_____________147\n_____________|_______________|\n5'-CAU...CAACG_______________GGUGG...CGU-3'\n______________GGCGA_GUGGUGGCU\n______________|||:|_|:::||||:\n______________CCGUU_CGUUACCGG\n3'-UUU...AGUCA_____A_________GUUGU...UUG-5'\n_____________|_______________|\n_____________55______________39\n |
140 -- 146 |
40 -- 46 |
-19.4494 kcal/mol |
6.98652 kcal/mol |
4.58617 kcal/mol |
132 147@LB@ | |@LB@5'-CAU...CAACG GGUGG...CGU-3'@LB@ GGCGA GUGGUGGCU@LB@ |||:| |:::||||:@LB@ CCGUU CGUUACCGG@LB@3'-UUU...AGUCA A GUUGU...UUG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -19.4494 kcal/mol@LB@Unfolding Energy - mRNA 6.98652 kcal/mol@LB@Unfolding Energy - sRNA 4.58617 kcal/mol@LB@@LB@Position - mRNA 133 -- 146@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 1 |
0 |
0 |
b2215 |
ompC |
-25.52 |
0.000001 |
134 -- 186 |
1 -- 70 |
outer membrane porin protein C |
|
_____________133____________________________________________________________________187\n_____________|______________________________________________________________________|\n5'-AUC...GAUUA___AG__UU_____________________________________AAGCA___________________AGAGG...AUC-3'\n______________AUG__GG__AAUCAGU____AUGCAGUGGC__________AUAAAA________AAUAAAGGCAUAUAAC\n______________|||__||__|||||||____|||||:||||__________||||||________||||||||||||||||\n______________UAC__CC__UUAGUCA____UACGUUACCG__________UAUUUU________UUAUUUCCGUAUAUUG\n3'-UUU...AAAUA___AA__UU_______CCGU__________GGUUGUCUUU______AGACACUG________________-5'\n_____________|_____________________________________________________________________|\n_____________71____________________________________________________________________1\n |
180 -- 186 |
1 -- 7 |
-48.3995 kcal/mol |
10.7142 kcal/mol |
12.1618 kcal/mol |
133 187@LB@ | |@LB@5'-AUC...GAUUA AG UU AAGCA AGAGG...AUC-3'@LB@ AUG GG AAUCAGU AUGCAGUGGC AUAAAA AAUAAAGGCAUAUAAC@LB@ ||| || ||||||| |||||:|||| |||||| ||||||||||||||||@LB@ UAC CC UUAGUCA UACGUUACCG UAUUUU UUAUUUCCGUAUAUUG@LB@3'-UUU...AAAUA AA UU CCGU GGUUGUCUUU AGACACUG -5'@LB@ | |@LB@ 71 1@LB@@LB@@LB@Energy -25.52 kcal/mol@LB@Hybridization Energy -48.3995 kcal/mol@LB@Unfolding Energy - mRNA 10.7142 kcal/mol@LB@Unfolding Energy - sRNA 12.1618 kcal/mol@LB@@LB@Position - mRNA 134 -- 186@LB@Position - sRNA 1 -- 70@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 63 |
0.004757 |
0.2539 |
b1342 |
ydaN |
-13.10 |
0.024145 |
140 -- 198 |
7 -- 70 |
putative Zn(II) transporter |
|
_____________139_______________________________________________________________199\n_____________|_________________________________________________________________|\n5'-CGU...AUGAG______CGU__________CA_____A____A___UAC_______UGCGU_______________CUGUG...AUG-3'\n______________AUGUUG___AA_CAG_GGC_____GA_GGCU_GAC___AAAAUAA______UGAUGAUGGAGGCA\n______________||||||___||_|||_|||_____:|_|||:_:||___|||||||______|||::||::|||||\n______________UACAAC___UU_GUC_CCG_____UU_CCGG_UUG___UUUUAUU______ACUGUUAUUUCCGU\n3'-UUU...AAAUA______CUU__A___A___UUACG__A____G___UC________UUAGAC______________AUAUUG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________6\n |
192 -- 198 |
7 -- 13 |
-39.9747 kcal/mol |
14.7113 kcal/mol |
12.1606 kcal/mol |
139 199@LB@ | |@LB@5'-CGU...AUGAG CGU CA A A UAC UGCGU CUGUG...AUG-3'@LB@ AUGUUG AA CAG GGC GA GGCU GAC AAAAUAA UGAUGAUGGAGGCA@LB@ |||||| || ||| ||| :| |||: :|| ||||||| |||::||::|||||@LB@ UACAAC UU GUC CCG UU CCGG UUG UUUUAUU ACUGUUAUUUCCGU@LB@3'-UUU...AAAUA CUU A A UUACG A G UC UUAGAC AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -13.10 kcal/mol@LB@Hybridization Energy -39.9747 kcal/mol@LB@Unfolding Energy - mRNA 14.7113 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 140 -- 198@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 3 |
3.498e-05 |
0.03921 |
b4255 |
rraB |
-13.36 |
0.020838 |
142 -- 156 |
41 -- 54 |
protein inhibitor of RNase E |
|
_____________141_____________157\n_____________|_______________|\n5'-GAG...GUGGA_______U_______GUGUG...CCA-3'\n______________GGCAAUG_CAGUGGU\n______________|||||||_||:|||:\n______________CCGUUAC_GUUACCG\n3'-UUU...AGUCA_______________GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
150 -- 156 |
41 -- 47 |
-21.65 kcal/mol |
4.39843 kcal/mol |
3.89026 kcal/mol |
141 157@LB@ | |@LB@5'-GAG...GUGGA U GUGUG...CCA-3'@LB@ GGCAAUG CAGUGGU@LB@ ||||||| ||:|||:@LB@ CCGUUAC GUUACCG@LB@3'-UUU...AGUCA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -21.65 kcal/mol@LB@Unfolding Energy - mRNA 4.39843 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 142 -- 156@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 99 |
0.009334 |
0.3118 |
b0675 |
umpH |
-9.49 |
0.153954 |
143 -- 172 |
39 -- 66 |
UMP phosphatase |
|
_____________142____________________________173\n_____________|______________________________|\n5'-AGC...UUUGC__________A__U__UUUUA_______G_UUAUU...AUA-3'\n______________UGGAAAAUUA_UG_GC_____UAGUGGC_C\n______________||||||||:|_||_||_____:|:||||_|\n______________ACCUUUUAGU_AC_CG_____GUUACCG_G\n3'-UUU...AUACA__________C_____UUAC________G_UUGUC...UUG-5'\n_____________|______________________________|\n_____________67_____________________________38\n |
145 -- 151 |
58 -- 64 |
-25.171 kcal/mol |
9.00393 kcal/mol |
6.67256 kcal/mol |
142 173@LB@ | |@LB@5'-AGC...UUUGC A U UUUUA G UUAUU...AUA-3'@LB@ UGGAAAAUUA UG GC UAGUGGC C@LB@ ||||||||:| || || :|:|||| |@LB@ ACCUUUUAGU AC CG GUUACCG G@LB@3'-UUU...AUACA C UUAC G UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.171 kcal/mol@LB@Unfolding Energy - mRNA 9.00393 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 108 |
0.01004 |
0.3126 |
b2422 |
cysA |
-10.23 |
0.108830 |
144 -- 158 |
52 -- 72 |
sulfate/thiosulfate transporter subunit |
|
_____________143___________________159\n_____________|_____________________|\n5'-GGU...AAAAA_____________________GCCUG...UGC-3'\n______________GUAUGUUG______CAGUGGC\n______________:|||||||______|||||||\n______________UAUACAAC______GUCACCG\n3'-UUU...AAAAA________CUUUUA_______UUACG...UUG-5'\n_____________|_____________________|\n_____________73____________________51\n |
152 -- 158 |
52 -- 58 |
-18.4697 kcal/mol |
5.08596 kcal/mol |
3.1495 kcal/mol |
143 159@LB@ | |@LB@5'-GGU...AAAAA GCCUG...UGC-3'@LB@ GUAUGUUG CAGUGGC@LB@ :||||||| |||||||@LB@ UAUACAAC GUCACCG@LB@3'-UUU...AAAAA CUUUUA UUACG...UUG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -18.4697 kcal/mol@LB@Unfolding Energy - mRNA 5.08596 kcal/mol@LB@Unfolding Energy - sRNA 3.1495 kcal/mol@LB@@LB@Position - mRNA 144 -- 158@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 109 |
0.01013 |
0.3127 |
b3805 |
hemC |
-12.29 |
0.037947 |
146 -- 209 |
1 -- 60 |
hydroxymethylbilane synthase |
|
_____________145_____________________________________________________________________210\n_____________|_______________________________________________________________________|\n5'-AAA...CUGAC____CUC_____AGG____UAG_____A________U____________________CAA______UA___AAUGU...GCC-3'\n______________AUCA___UGGCA___AUGU___GAUGG_CC_ACGGA_GAUAA______UGACGGUAA___GCAUGU__GAC\n______________||||___|||||___|||:___:||||_||_||:||_:||||______||||::|||___||||:|__:||\n______________UAGU___ACCGU___UACG___UUACC_GG_UGUCU_UUAUU______ACUGUUAUU___CGUAUA__UUG\n3'-UUU...CCUUU____C______________________G__U_____U_____UUAGAC_________UC____________-5'\n_____________|______________________________________________________________________|\n_____________61_____________________________________________________________________1\n |
189 -- 195 |
12 -- 18 |
-39.6606 kcal/mol |
15.2176 kcal/mol |
12.1554 kcal/mol |
145 210@LB@ | |@LB@5'-AAA...CUGAC CUC AGG UAG A U CAA UA AAUGU...GCC-3'@LB@ AUCA UGGCA AUGU GAUGG CC ACGGA GAUAA UGACGGUAA GCAUGU GAC@LB@ |||| ||||| |||: :|||| || ||:|| :|||| ||||::||| ||||:| :||@LB@ UAGU ACCGU UACG UUACC GG UGUCU UUAUU ACUGUUAUU CGUAUA UUG@LB@3'-UUU...CCUUU C G U U UUAGAC UC -5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -39.6606 kcal/mol@LB@Unfolding Energy - mRNA 15.2176 kcal/mol@LB@Unfolding Energy - sRNA 12.1554 kcal/mol@LB@@LB@Position - mRNA 146 -- 209@LB@Position - sRNA 1 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 181 |
0.02239 |
0.4143 |
b2894 |
xerD |
-11.89 |
0.046874 |
147 -- 194 |
9 -- 61 |
site-specific tyrosine recombinase |
|
_____________146_____________________________________________________195\n_____________|_______________________________________________________|\n5'-ACC...GCUUU_____C____________AA___A_______UC_______GA_____C_______GCGCA...UGU-3'\n______________AGUCA__GGCA___CAAU__GGC_UAAUGGA_____AAAU__GUGAC_AUAAGGG\n______________|:|||__||||___||||__|||_:||::||_____||||__|||||_||||:||\n______________UUAGU__CCGU___GUUA__CCG_GUUGUCU_____UUUA__CACUG_UAUUUCC\n3'-UUU...ACCUU_____CA____UAC_________G_______UUUAU____GA_____U_______GUAUAUUG-5'\n_____________|_______________________________________________________|\n_____________62______________________________________________________8\n |
188 -- 194 |
9 -- 15 |
-33.0704 kcal/mol |
10.0398 kcal/mol |
11.1358 kcal/mol |
146 195@LB@ | |@LB@5'-ACC...GCUUU C AA A UC GA C GCGCA...UGU-3'@LB@ AGUCA GGCA CAAU GGC UAAUGGA AAAU GUGAC AUAAGGG@LB@ |:||| |||| |||| ||| :||::|| |||| ||||| ||||:||@LB@ UUAGU CCGU GUUA CCG GUUGUCU UUUA CACUG UAUUUCC@LB@3'-UUU...ACCUU CA UAC G UUUAU GA U GUAUAUUG-5'@LB@ | |@LB@ 62 8@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -33.0704 kcal/mol@LB@Unfolding Energy - mRNA 10.0398 kcal/mol@LB@Unfolding Energy - sRNA 11.1358 kcal/mol@LB@@LB@Position - mRNA 147 -- 194@LB@Position - sRNA 9 -- 61@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 51 |
0.003814 |
0.237 |
b3888 |
yiiD |
-11.06 |
0.072417 |
149 -- 179 |
39 -- 72 |
GNAT family putative N-acetyltransferase |
|
_____________148_________________________________180\n_____________|___________________________________|\n5'-UUU...UGCGG_____CA__U______C___U______________CGUGA...AUC-3'\n______________AUAUG__GG___AUCG_UGG_CAAUG__AUGGCCC\n______________|||||__||___|||:_|||_|||||__|||||||\n______________UAUAC__CC___UAGU_ACC_GUUAC__UACCGGG\n3'-UUU...AAAAA_____AA__UUU____C_________GU_______UUGUC...UUG-5'\n_____________|___________________________________|\n_____________73__________________________________38\n |
173 -- 179 |
39 -- 45 |
-28.8621 kcal/mol |
10.5098 kcal/mol |
7.29447 kcal/mol |
148 180@LB@ | |@LB@5'-UUU...UGCGG CA U C U CGUGA...AUC-3'@LB@ AUAUG GG AUCG UGG CAAUG AUGGCCC@LB@ ||||| || |||: ||| ||||| |||||||@LB@ UAUAC CC UAGU ACC GUUAC UACCGGG@LB@3'-UUU...AAAAA AA UUU C GU UUGUC...UUG-5'@LB@ | |@LB@ 73 38@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -28.8621 kcal/mol@LB@Unfolding Energy - mRNA 10.5098 kcal/mol@LB@Unfolding Energy - sRNA 7.29447 kcal/mol@LB@@LB@Position - mRNA 149 -- 179@LB@Position - sRNA 39 -- 72@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 39 -- 45@LB@ |
