| 168 |
0.01999 |
0.3993 |
b2171 |
yeiP |
-9.24 |
0.172435 |
8 -- 24 |
39 -- 54 |
elongation factor P-like protein |
|
_____________7_________________25\n_____________|_________________|\n____5'-UUGAAGG__________CAC____CGCAA...GCG-3'\n______________GGCAGUGCAA___GCCC\n______________||||:|||||___||||\n______________CCGUUACGUU___CGGG\n3'-UUU...AGUCA__________AC_____UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
11 -- 17 |
45 -- 51 |
-22.1688 kcal/mol |
8.16527 kcal/mol |
4.76022 kcal/mol |
7 25@LB@ | |@LB@ 5'-UUGAAGG CAC CGCAA...GCG-3'@LB@ GGCAGUGCAA GCCC@LB@ ||||:||||| ||||@LB@ CCGUUACGUU CGGG@LB@3'-UUU...AGUCA AC UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -22.1688 kcal/mol@LB@Unfolding Energy - mRNA 8.16527 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 8 -- 24@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 21 |
0.0009862 |
0.1579 |
b2572 |
rseA |
-10.60 |
0.091224 |
9 -- 29 |
44 -- 65 |
anti-sigma factor |
|
_____________8______________________30\n_____________|______________________|\n___5'-UCCCUCCC________UAC____UG_____AACCU...GGG-3'\n______________GGAAGAUU____GCA__GCAAU\n______________||||:||:____|||__|||||\n______________CCUUUUAG____CGU__CGUUA\n3'-UUU...UACAA________UCAC___UA_____CCGGG...UUG-5'\n_____________|______________________|\n_____________66_____________________43\n |
10 -- 16 |
58 -- 64 |
-18.0609 kcal/mol |
3.14057 kcal/mol |
4.32401 kcal/mol |
8 30@LB@ | |@LB@ 5'-UCCCUCCC UAC UG AACCU...GGG-3'@LB@ GGAAGAUU GCA GCAAU@LB@ ||||:||: ||| |||||@LB@ CCUUUUAG CGU CGUUA@LB@3'-UUU...UACAA UCAC UA CCGGG...UUG-5'@LB@ | |@LB@ 66 43@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -18.0609 kcal/mol@LB@Unfolding Energy - mRNA 3.14057 kcal/mol@LB@Unfolding Energy - sRNA 4.32401 kcal/mol@LB@@LB@Position - mRNA 9 -- 29@LB@Position - sRNA 44 -- 65@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 39 |
0.002581 |
0.2088 |
b3991 |
thiG |
-13.93 |
0.014953 |
9 -- 37 |
40 -- 69 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________8_______________________________38\n_____________|_______________________________|\n___5'-GCAGAUCC____UAAC_____A_____________C___GCCGG...CCG-3'\n______________UGUU____GAUCA___GCGAUGCAGUG_GCC\n______________||||____:||||___||:|||||:||_|||\n______________ACAA____UUAGU___CGUUACGUUAC_CGG\n3'-UUU...AAUAU____CCUU_____CAC_______________GUUGU...UUG-5'\n_____________|_______________________________|\n_____________70______________________________39\n |
27 -- 33 |
43 -- 49 |
-27.0914 kcal/mol |
6.322 kcal/mol |
6.83756 kcal/mol |
8 38@LB@ | |@LB@ 5'-GCAGAUCC UAAC A C GCCGG...CCG-3'@LB@ UGUU GAUCA GCGAUGCAGUG GCC@LB@ |||| :|||| ||:|||||:|| |||@LB@ ACAA UUAGU CGUUACGUUAC CGG@LB@3'-UUU...AAUAU CCUU CAC GUUGU...UUG-5'@LB@ | |@LB@ 70 39@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -27.0914 kcal/mol@LB@Unfolding Energy - mRNA 6.322 kcal/mol@LB@Unfolding Energy - sRNA 6.83756 kcal/mol@LB@@LB@Position - mRNA 9 -- 37@LB@Position - sRNA 40 -- 69@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 170 |
0.02048 |
0.4033 |
b3201 |
lptB |
-9.27 |
0.170285 |
9 -- 55 |
2 -- 54 |
lipopolysaccharide export ABC transporter ATPase |
|
_____________8______________________________________________________56\n_____________|______________________________________________________|\n___5'-UUCUGACG________UUAUC_G_______UC___________CA___U_____________GAUCA...GUC-3'\n______________GGUAAUGC_____U_CAGCAGG__GAUA______G__ACA_UAAGGGCG_AUAA\n______________||:|||||_____:_||:|||:__:|||______|__|||_|||:|||:_||||\n______________CCGUUACG_____G_GUUGUCU__UUAU______C__UGU_AUUUCCGU_UAUU\n3'-UUU...AGUCA________UUACC_G_______U_____UUUAGA_AC___U________A____G-5'\n_____________|______________________________________________________|\n_____________55_____________________________________________________1\n |
45 -- 51 |
7 -- 13 |
-32.2484 kcal/mol |
10.9323 kcal/mol |
12.0447 kcal/mol |
8 56@LB@ | |@LB@ 5'-UUCUGACG UUAUC G UC CA U GAUCA...GUC-3'@LB@ GGUAAUGC U CAGCAGG GAUA G ACA UAAGGGCG AUAA@LB@ ||:||||| : ||:|||: :||| | ||| |||:|||: ||||@LB@ CCGUUACG G GUUGUCU UUAU C UGU AUUUCCGU UAUU@LB@3'-UUU...AGUCA UUACC G U UUUAGA AC U A G-5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -32.2484 kcal/mol@LB@Unfolding Energy - mRNA 10.9323 kcal/mol@LB@Unfolding Energy - sRNA 12.0447 kcal/mol@LB@@LB@Position - mRNA 9 -- 55@LB@Position - sRNA 2 -- 54@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 200 |
0.0254 |
0.4256 |
b0975 |
hyaD |
-14.05 |
0.013908 |
10 -- 31 |
42 -- 66 |
hydrogenase 1 maturation protease |
|
_____________9_________________________32\n_____________|_________________________|\n5'-UUU...UCUAC____CG___________CU______ACAUU...ACC-3'\n______________UGGA_____GGUGGCAA__CAAUGG\n______________||||_____:|||||||__||||||\n______________ACCU_____UCACCGUU__GUUACC\n3'-UUU...AUACA____UUUAG________AC______GGGUU...UUG-5'\n_____________|_________________________|\n_____________67________________________41\n |
17 -- 23 |
50 -- 56 |
-23.7385 kcal/mol |
4.08533 kcal/mol |
5.59884 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...UCUAC CG CU ACAUU...ACC-3'@LB@ UGGA GGUGGCAA CAAUGG@LB@ |||| :||||||| ||||||@LB@ ACCU UCACCGUU GUUACC@LB@3'-UUU...AUACA UUUAG AC GGGUU...UUG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -23.7385 kcal/mol@LB@Unfolding Energy - mRNA 4.08533 kcal/mol@LB@Unfolding Energy - sRNA 5.59884 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 68 |
0.005347 |
0.2645 |
b3184 |
yhbE |
-8.71 |
0.217326 |
12 -- 35 |
8 -- 33 |
EamA family inner membrane putative transporter |
|
_____________11_________________________36\n_____________|__________________________|\n5'-AAG...ACGGU___________C____AGU_______CCGAA...UGG-3'\n______________AAAGUGAAAUU___GA___UAAAGGC\n______________|||:|:||||:___||___|||||||\n______________UUUUAUUUUAG___CU___AUUUCCG\n3'-UUU...UUGUC___________ACA__GUU_______UAUAUUG-5'\n_____________|__________________________|\n_____________34_________________________7\n |
29 -- 35 |
8 -- 14 |
-15.936 kcal/mol |
2.19409 kcal/mol |
5.02883 kcal/mol |
11 36@LB@ | |@LB@5'-AAG...ACGGU C AGU CCGAA...UGG-3'@LB@ AAAGUGAAAUU GA UAAAGGC@LB@ |||:|:||||: || |||||||@LB@ UUUUAUUUUAG CU AUUUCCG@LB@3'-UUU...UUGUC ACA GUU UAUAUUG-5'@LB@ | |@LB@ 34 7@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -15.936 kcal/mol@LB@Unfolding Energy - mRNA 2.19409 kcal/mol@LB@Unfolding Energy - sRNA 5.02883 kcal/mol@LB@@LB@Position - mRNA 12 -- 35@LB@Position - sRNA 8 -- 33@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 107 |
0.009921 |
0.3118 |
b0836 |
bssR |
-14.44 |
0.011050 |
12 -- 65 |
14 -- 65 |
repressor of biofilm formation by indole transport regulation |
|
_____________11____________________________________________________________66\n_____________|_____________________________________________________________|\n5'-AUU...UUACA_____G___________________A___U______UUCUG____________AUC_____CUCAU...ACA-3'\n______________GGAAA_GUCAG_GGCAG______GG_UUC_ACAGAG_____GAUAAAAUUUGU___GCAAU\n______________|||||_:||||_||||:______||_::|_|||||:_____:|||||||:|||___:||||\n______________CCUUU_UAGUC_CCGUU______CC_GGG_UGUCUU_____UUAUUUUAGACA___UGUUA\n3'-UUU...UACAA___________A_____ACGUUA______U_______________________C_______UUUCC...UUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________13\n |
46 -- 52 |
25 -- 31 |
-37.4064 kcal/mol |
11.8508 kcal/mol |
11.1173 kcal/mol |
11 66@LB@ | |@LB@5'-AUU...UUACA G A U UUCUG AUC CUCAU...ACA-3'@LB@ GGAAA GUCAG GGCAG GG UUC ACAGAG GAUAAAAUUUGU GCAAU@LB@ ||||| :|||| ||||: || ::| |||||: :|||||||:||| :||||@LB@ CCUUU UAGUC CCGUU CC GGG UGUCUU UUAUUUUAGACA UGUUA@LB@3'-UUU...UACAA A ACGUUA U C UUUCC...UUG-5'@LB@ | |@LB@ 66 13@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -37.4064 kcal/mol@LB@Unfolding Energy - mRNA 11.8508 kcal/mol@LB@Unfolding Energy - sRNA 11.1173 kcal/mol@LB@@LB@Position - mRNA 12 -- 65@LB@Position - sRNA 14 -- 65@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 72 |
0.005975 |
0.2791 |
b1062 |
pyrC |
-13.01 |
0.025478 |
15 -- 31 |
41 -- 58 |
dihydro-orotase |
|
_____________14_________________32\n_____________|__________________|\n5'-GCG...GCAGC_________A________GAAAA...CCA-3'\n______________CAG_GGCGA_GCAAUGGC\n______________|||_|||:|_||||||||\n______________GUC_CCGUU_CGUUACCG\n3'-UUU...UUUUA___A_____A________GGUUG...UUG-5'\n_____________|__________________|\n_____________59_________________40\n |
25 -- 31 |
41 -- 47 |
-24.8377 kcal/mol |
7.56192 kcal/mol |
4.26806 kcal/mol |
14 32@LB@ | |@LB@5'-GCG...GCAGC A GAAAA...CCA-3'@LB@ CAG GGCGA GCAAUGGC@LB@ ||| |||:| ||||||||@LB@ GUC CCGUU CGUUACCG@LB@3'-UUU...UUUUA A A GGUUG...UUG-5'@LB@ | |@LB@ 59 40@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -24.8377 kcal/mol@LB@Unfolding Energy - mRNA 7.56192 kcal/mol@LB@Unfolding Energy - sRNA 4.26806 kcal/mol@LB@@LB@Position - mRNA 15 -- 31@LB@Position - sRNA 41 -- 58@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 8 |
0.0003008 |
0.1262 |
b3191 |
mlaB |
-9.66 |
0.142648 |
16 -- 23 |
51 -- 58 |
ABC transporter maintaining OM lipid asymmetry cytoplasmic STAS component |
|
_____________15_______24\n_____________|________|\n5'-GUG...ACUUC________UAAAA...AGG-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
17 -- 23 |
51 -- 57 |
-13.9143 kcal/mol |
1.55672 kcal/mol |
2.69685 kcal/mol |
15 24@LB@ | |@LB@5'-GUG...ACUUC UAAAA...AGG-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -13.9143 kcal/mol@LB@Unfolding Energy - mRNA 1.55672 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 16 -- 23@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 51 -- 57@LB@ |
