| 13 |
0.0005138 |
0.1268 |
b0055 |
djlA |
-16.40 |
0.003186 |
213 -- 240 |
39 -- 65 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________212__________________________241\n_____________|____________________________|\n5'-GAC...AUUGG__A_______U_____UG__C_______UACUG...UUG-3'\n______________GG_AAAAUCA_UGGCG__GC_GUGGCCU\n______________||_|||||||_||||:__||_:|||||:\n______________CC_UUUUAGU_ACCGU__CG_UACCGGG\n3'-UUU...UACAA__________C_____UA__U_______UUGUC...UUG-5'\n_____________|____________________________|\n_____________66___________________________38\n |
234 -- 240 |
39 -- 45 |
-30.8595 kcal/mol |
7.7929 kcal/mol |
6.66922 kcal/mol |
212 241@LB@ | |@LB@5'-GAC...AUUGG A U UG C UACUG...UUG-3'@LB@ GG AAAAUCA UGGCG GC GUGGCCU@LB@ || ||||||| ||||: || :|||||:@LB@ CC UUUUAGU ACCGU CG UACCGGG@LB@3'-UUU...UACAA C UA U UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 7.7929 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 213 -- 240@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 79 |
0.006804 |
0.2822 |
b2947 |
gshB |
-11.48 |
0.058268 |
213 -- 229 |
39 -- 54 |
glutathione synthetase |
|
_____________212_______________230\n_____________|_________________|\n5'-UGC...AGCUC____UC_______A___CAUCG...ACG-3'\n______________GGCA__GUGAUGG_CCC\n______________||||__|::||||_|||\n______________CCGU__CGUUACC_GGG\n3'-UUU...AGUCA____UA___________UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
219 -- 225 |
42 -- 48 |
-21.2333 kcal/mol |
4.99211 kcal/mol |
4.76022 kcal/mol |
212 230@LB@ | |@LB@5'-UGC...AGCUC UC A CAUCG...ACG-3'@LB@ GGCA GUGAUGG CCC@LB@ |||| |::|||| |||@LB@ CCGU CGUUACC GGG@LB@3'-UUU...AGUCA UA UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -21.2333 kcal/mol@LB@Unfolding Energy - mRNA 4.99211 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 149 |
0.01777 |
0.3828 |
b3024 |
ygiW |
-12.90 |
0.027028 |
214 -- 237 |
39 -- 58 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________213______________________238\n_____________|________________________|\n5'-UGA...AUUCG___CA_____CGCA__________UGUGC...AAA-3'\n______________CAG__GUAAU____GUAAUGGCCC\n______________|||__|:|||____|:||||||||\n______________GUC__CGUUA____CGUUACCGGG\n3'-UUU...UUUUA___AC___________________UUGUC...UUG-5'\n_____________|________________________|\n_____________59_______________________38\n |
231 -- 237 |
39 -- 45 |
-23.1488 kcal/mol |
3.67833 kcal/mol |
6.56779 kcal/mol |
213 238@LB@ | |@LB@5'-UGA...AUUCG CA CGCA UGUGC...AAA-3'@LB@ CAG GUAAU GUAAUGGCCC@LB@ ||| |:||| |:||||||||@LB@ GUC CGUUA CGUUACCGGG@LB@3'-UUU...UUUUA AC UUGUC...UUG-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -23.1488 kcal/mol@LB@Unfolding Energy - mRNA 3.67833 kcal/mol@LB@Unfolding Energy - sRNA 6.56779 kcal/mol@LB@@LB@Position - mRNA 214 -- 237@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 182 |
0.02271 |
0.4143 |
b1686 |
menI |
-7.81 |
0.313804 |
214 -- 222 |
57 -- 65 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________213_______223\n_____________|_________|\n5'-GGC...GAAAC_________CCCUG...AUG-3'\n______________GGAAAAUCA\n______________|||||||||\n______________CCUUUUAGU\n3'-UUU...UACAA_________CACCG...UUG-5'\n_____________|_________|\n_____________66________56\n |
216 -- 222 |
57 -- 63 |
-11.126 kcal/mol |
2.47866 kcal/mol |
0.839876 kcal/mol |
213 223@LB@ | |@LB@5'-GGC...GAAAC CCCUG...AUG-3'@LB@ GGAAAAUCA@LB@ |||||||||@LB@ CCUUUUAGU@LB@3'-UUU...UACAA CACCG...UUG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -11.126 kcal/mol@LB@Unfolding Energy - mRNA 2.47866 kcal/mol@LB@Unfolding Energy - sRNA 0.839876 kcal/mol@LB@@LB@Position - mRNA 214 -- 222@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 189 |
0.02329 |
0.4145 |
b1823 |
cspC |
-8.37 |
0.250499 |
214 -- 248 |
8 -- 63 |
stress protein member of the CspA-family |
|
_____________213______________________________________________________249\n_____________|________________________________________________________|\n5'-UAU...GAUUA____________UA__________________________________________UUUGG...UCU-3'\n______________AAGGUCA__GGU_____AGUGGUUCAAC________GAGUC________UAAAGGU\n______________||::|||__||:_____|:|||::||||________:|:||________||||||:\n______________UUUUAGU__CCG_____UUACCGGGUUG________UUUAG________AUUUCCG\n3'-UUU...CAACC_______CA___UUACG___________UCUUUUAU_____ACACUGUU_______UAUAUUG-5'\n_____________|________________________________________________________|\n_____________64_______________________________________________________7\n |
242 -- 248 |
8 -- 14 |
-25.9028 kcal/mol |
5.39828 kcal/mol |
12.1311 kcal/mol |
213 249@LB@ | |@LB@5'-UAU...GAUUA UA UUUGG...UCU-3'@LB@ AAGGUCA GGU AGUGGUUCAAC GAGUC UAAAGGU@LB@ ||::||| ||: |:|||::|||| :|:|| ||||||:@LB@ UUUUAGU CCG UUACCGGGUUG UUUAG AUUUCCG@LB@3'-UUU...CAACC CA UUACG UCUUUUAU ACACUGUU UAUAUUG-5'@LB@ | |@LB@ 64 7@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -25.9028 kcal/mol@LB@Unfolding Energy - mRNA 5.39828 kcal/mol@LB@Unfolding Energy - sRNA 12.1311 kcal/mol@LB@@LB@Position - mRNA 214 -- 248@LB@Position - sRNA 8 -- 63@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 198 |
0.02539 |
0.4256 |
b1624 |
ydgJ |
-9.27 |
0.170491 |
217 -- 246 |
45 -- 70 |
putative oxidoreductase |
|
_____________216____________________________247\n_____________|______________________________|\n5'-GUA...CAUCC________UU______GUA____U______GCAAA...CGG-3'\n______________GUGUUGGG__GAUUGG___UGGU_AUGCGA\n______________:||||||:__:||::|___|||:_||||:|\n______________UACAACCU__UUAGUC___ACCG_UACGUU\n3'-UUU...AAAUA________U______________U______ACCGG...UUG-5'\n_____________|______________________________|\n_____________71_____________________________44\n |
218 -- 224 |
63 -- 69 |
-23.4852 kcal/mol |
9.77058 kcal/mol |
4.44589 kcal/mol |
216 247@LB@ | |@LB@5'-GUA...CAUCC UU GUA U GCAAA...CGG-3'@LB@ GUGUUGGG GAUUGG UGGU AUGCGA@LB@ :||||||: :||::| |||: ||||:|@LB@ UACAACCU UUAGUC ACCG UACGUU@LB@3'-UUU...AAAUA U U ACCGG...UUG-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -23.4852 kcal/mol@LB@Unfolding Energy - mRNA 9.77058 kcal/mol@LB@Unfolding Energy - sRNA 4.44589 kcal/mol@LB@@LB@Position - mRNA 217 -- 246@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 186 |
0.02292 |
0.4143 |
b2717 |
hycI |
-8.63 |
0.225035 |
220 -- 254 |
38 -- 70 |
protease involved in processing C-terminal end of HycE |
|
_____________219___________________________________255\n_____________|_____________________________________|\n5'-AGC...ACUCU_______C__UAG__UGAUG______________G__GGUCC...ACU-3'\n______________GUGUUGG_AA___CA_____GGCGAUG__AUGGC_CA\n______________:||||||_||___||_____|||:|||__|||||_||\n______________UACAACC_UU___GU_____CCGUUAC__UACCG_GU\n3'-UUU...AAAUA__________UUA__CA__________GU_____G__UGUCU...UUG-5'\n_____________|_____________________________________|\n_____________71____________________________________37\n |
240 -- 246 |
48 -- 54 |
-27.127 kcal/mol |
11.1995 kcal/mol |
7.29667 kcal/mol |
219 255@LB@ | |@LB@5'-AGC...ACUCU C UAG UGAUG G GGUCC...ACU-3'@LB@ GUGUUGG AA CA GGCGAUG AUGGC CA@LB@ :|||||| || || |||:||| ||||| ||@LB@ UACAACC UU GU CCGUUAC UACCG GU@LB@3'-UUU...AAAUA UUA CA GU G UGUCU...UUG-5'@LB@ | |@LB@ 71 37@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -27.127 kcal/mol@LB@Unfolding Energy - mRNA 11.1995 kcal/mol@LB@Unfolding Energy - sRNA 7.29667 kcal/mol@LB@@LB@Position - mRNA 220 -- 254@LB@Position - sRNA 38 -- 70@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 48 |
0.003417 |
0.237 |
b0002 |
thrA |
-15.68 |
0.005086 |
222 -- 242 |
46 -- 65 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________221___________________243\n_____________|_____________________|\n5'-CCA...UCGGC__UAC___________A____GAACG...UGG-3'\n______________GG___AUCAGUGGCAA_UGCA\n______________||___|||||||||||_||||\n______________CC___UAGUCACCGUU_ACGU\n3'-UUU...UACAA__UUU________________UACCG...UUG-5'\n_____________|_____________________|\n_____________66____________________45\n |
231 -- 237 |
50 -- 56 |
-24.9116 kcal/mol |
5.14883 kcal/mol |
4.07994 kcal/mol |
221 243@LB@ | |@LB@5'-CCA...UCGGC UAC A GAACG...UGG-3'@LB@ GG AUCAGUGGCAA UGCA@LB@ || ||||||||||| ||||@LB@ CC UAGUCACCGUU ACGU@LB@3'-UUU...UACAA UUU UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -24.9116 kcal/mol@LB@Unfolding Energy - mRNA 5.14883 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 222 -- 242@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 55 |
0.003921 |
0.237 |
b1781 |
yeaE |
-12.93 |
0.026626 |
223 -- 235 |
47 -- 59 |
aldo-keto reductase methylglyoxal to acetol NADPH-dependent |
|
_____________222___________236\n_____________|_____________|\n5'-GUU...UCAAU_____________CUCAC...CAG-3'\n______________UUAGUGGCGAUGU\n______________|:||||||:|||:\n______________AGUCACCGUUACG\n3'-UUU...CUUUU_____________UUACC...UUG-5'\n_____________|_____________|\n_____________60____________46\n |
229 -- 235 |
47 -- 53 |
-19.9127 kcal/mol |
3.5603 kcal/mol |
3.42309 kcal/mol |
222 236@LB@ | |@LB@5'-GUU...UCAAU CUCAC...CAG-3'@LB@ UUAGUGGCGAUGU@LB@ |:||||||:|||:@LB@ AGUCACCGUUACG@LB@3'-UUU...CUUUU UUACC...UUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -19.9127 kcal/mol@LB@Unfolding Energy - mRNA 3.5603 kcal/mol@LB@Unfolding Energy - sRNA 3.42309 kcal/mol@LB@@LB@Position - mRNA 223 -- 235@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 40 |
0.00261 |
0.2088 |
b3008 |
metC |
-11.48 |
0.058180 |
224 -- 274 |
11 -- 59 |
cystathionine beta-lyase PLP-dependent |
|
_____________223___________________________________________________275\n_____________|_____________________________________________________|\n5'-CGA...GAUAC___AC____G__________A_G_____A______CAC___C_GC________UAGCG...CGC-3'\n______________UCA__UGGU_AAUGCA__GG_C_CAGCA_AAAAUA___UCU_G__GCGGUAAA\n______________|||__|||:_||||||__||_|_||:||_||||||___|||_|__:|::||||\n______________AGU__ACCG_UUACGU__CC_G_GUUGU_UUUUAU___AGA_C__UGUUAUUU\n3'-UUU...CUUUU___C____________UA____G_____C______UUU_____AC________CCGUA...UUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________10\n |
268 -- 274 |
11 -- 17 |
-31.6805 kcal/mol |
9.07324 kcal/mol |
11.1233 kcal/mol |
223 275@LB@ | |@LB@5'-CGA...GAUAC AC G A G A CAC C GC UAGCG...CGC-3'@LB@ UCA UGGU AAUGCA GG C CAGCA AAAAUA UCU G GCGGUAAA@LB@ ||| |||: |||||| || | ||:|| |||||| ||| | :|::||||@LB@ AGU ACCG UUACGU CC G GUUGU UUUUAU AGA C UGUUAUUU@LB@3'-UUU...CUUUU C UA G C UUU AC CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -31.6805 kcal/mol@LB@Unfolding Energy - mRNA 9.07324 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 224 -- 274@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 11 -- 17@LB@ |
