71 |
0.01472 |
0.6177 |
b0846 |
rcdA |
-10.28 |
0.035999 |
187 -- 195 |
44 -- 52 |
transcriptional regulator of csgD and ybiJI; autoregulator |
|
_____________186_______196\n_____________|_________|\n5'-GCG...UGCAG_________AUGAC...AAA-3'\n______________AGAGAGGAA\n______________|:|||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
189 -- 195 |
44 -- 50 |
-11.6116 kcal/mol |
0.46711 kcal/mol |
0.860683 kcal/mol |
186 196@LB@ | |@LB@5'-GCG...UGCAG AUGAC...AAA-3'@LB@ AGAGAGGAA@LB@ |:|||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -11.6116 kcal/mol@LB@Unfolding Energy - mRNA 0.46711 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 187 -- 195@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
72 |
0.015 |
0.6177 |
b2513 |
yfgM |
-10.40 |
0.034106 |
179 -- 190 |
45 -- 55 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________178__________191\n_____________|____________|\n5'-GGC...ACUGG________A___GAAGG...UUG-3'\n______________GUUAAGGA_GGA\n______________||:||:||_|||\n______________CAGUUUCU_CCU\n3'-UUU...CCGGG____________UAAAG...ACA-5'\n_____________|____________|\n_____________56___________44\n |
180 -- 186 |
48 -- 54 |
-12.2699 kcal/mol |
0.940443 kcal/mol |
0.930875 kcal/mol |
178 191@LB@ | |@LB@5'-GGC...ACUGG A GAAGG...UUG-3'@LB@ GUUAAGGA GGA@LB@ ||:||:|| |||@LB@ CAGUUUCU CCU@LB@3'-UUU...CCGGG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -10.40 kcal/mol@LB@Hybridization Energy -12.2699 kcal/mol@LB@Unfolding Energy - mRNA 0.940443 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 179 -- 190@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 48 -- 54@LB@ |
73 |
0.01516 |
0.6177 |
b0619 |
citA |
-15.44 |
0.003129 |
164 -- 175 |
46 -- 57 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________163__________176\n_____________|____________|\n5'-CAU...UACAU____________CUCGG...UCA-3'\n______________CCGUCAAAGAGG\n______________||||||||||||\n______________GGCAGUUUCUCC\n3'-UUU...AACCG____________UUAAA...ACA-5'\n_____________|____________|\n_____________58___________45\n |
169 -- 175 |
46 -- 52 |
-20.3901 kcal/mol |
2.21322 kcal/mol |
2.7365 kcal/mol |
163 176@LB@ | |@LB@5'-CAU...UACAU CUCGG...UCA-3'@LB@ CCGUCAAAGAGG@LB@ ||||||||||||@LB@ GGCAGUUUCUCC@LB@3'-UUU...AACCG UUAAA...ACA-5'@LB@ | |@LB@ 58 45@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -20.3901 kcal/mol@LB@Unfolding Energy - mRNA 2.21322 kcal/mol@LB@Unfolding Energy - sRNA 2.7365 kcal/mol@LB@@LB@Position - mRNA 164 -- 175@LB@Position - sRNA 46 -- 57@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 46 -- 52@LB@ |
74 |
0.01569 |
0.6177 |
b3012 |
dkgA |
-8.72 |
0.074604 |
189 -- 197 |
44 -- 52 |
2 5-diketo-D-gluconate reductase A |
|
_____________188_______198\n_____________|_________|\n5'-CUG...AUAUA_________CGUAU...CCA-3'\n______________AAGGAGGAA\n______________||:||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
191 -- 197 |
44 -- 50 |
-11.1725 kcal/mol |
1.58724 kcal/mol |
0.860683 kcal/mol |
188 198@LB@ | |@LB@5'-CUG...AUAUA CGUAU...CCA-3'@LB@ AAGGAGGAA@LB@ ||:||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -11.1725 kcal/mol@LB@Unfolding Energy - mRNA 1.58724 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 44 -- 50@LB@ |
75 |
0.01577 |
0.6177 |
b1345 |
intR |
-9.71 |
0.047033 |
139 -- 151 |
42 -- 53 |
Rac prophage; integrase |
|
_____________138___________152\n_____________|_____________|\n5'-UAA...GACAG____C________AUCUG...GGG-3'\n______________CAAA_GAGGGAUU\n______________||||_||||:|||\n______________GUUU_CUCCUUAA\n3'-UUU...GGGCA_____________AGUAA...ACA-5'\n_____________|_____________|\n_____________54____________41\n |
145 -- 151 |
42 -- 48 |
-12.4741 kcal/mol |
1.8255 kcal/mol |
0.933904 kcal/mol |
138 152@LB@ | |@LB@5'-UAA...GACAG C AUCUG...GGG-3'@LB@ CAAA GAGGGAUU@LB@ |||| ||||:|||@LB@ GUUU CUCCUUAA@LB@3'-UUU...GGGCA AGUAA...ACA-5'@LB@ | |@LB@ 54 41@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -12.4741 kcal/mol@LB@Unfolding Energy - mRNA 1.8255 kcal/mol@LB@Unfolding Energy - sRNA 0.933904 kcal/mol@LB@@LB@Position - mRNA 139 -- 151@LB@Position - sRNA 42 -- 53@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 42 -- 48@LB@ |
76 |
0.01599 |
0.6177 |
b1849 |
purT |
-9.18 |
0.060248 |
187 -- 212 |
25 -- 50 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________186________________________213\n_____________|__________________________|\n5'-UUU...UAAUC______UA______AUGAC_______GGCAC...GUC-3'\n______________AGGGGA__UUCGUU_____GUUAUUA\n______________||:|||__|||:||_____:||||||\n______________UCUCCU__AAGUAA_____UAAUAAU\n3'-UUU...CAGUU______UA______AAAAA_______ACGGC...ACA-5'\n_____________|__________________________|\n_____________51_________________________24\n |
206 -- 212 |
25 -- 31 |
-15.1619 kcal/mol |
4.88468 kcal/mol |
1.09239 kcal/mol |
186 213@LB@ | |@LB@5'-UUU...UAAUC UA AUGAC GGCAC...GUC-3'@LB@ AGGGGA UUCGUU GUUAUUA@LB@ ||:||| |||:|| :||||||@LB@ UCUCCU AAGUAA UAAUAAU@LB@3'-UUU...CAGUU UA AAAAA ACGGC...ACA-5'@LB@ | |@LB@ 51 24@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -15.1619 kcal/mol@LB@Unfolding Energy - mRNA 4.88468 kcal/mol@LB@Unfolding Energy - sRNA 1.09239 kcal/mol@LB@@LB@Position - mRNA 187 -- 212@LB@Position - sRNA 25 -- 50@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 25 -- 31@LB@ |
77 |
0.01626 |
0.6177 |
b1414 |
ydcF |
-7.59 |
0.125301 |
189 -- 198 |
44 -- 53 |
DUF218 superfamily protein SAM-binding |
|
_____________188________199\n_____________|__________|\n5'-GGU...AACGA__________CCAUG...UGC-3'\n______________UAAGGAGGAA\n______________:||:||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
192 -- 198 |
44 -- 50 |
-11.4771 kcal/mol |
2.95852 kcal/mol |
0.927997 kcal/mol |
188 199@LB@ | |@LB@5'-GGU...AACGA CCAUG...UGC-3'@LB@ UAAGGAGGAA@LB@ :||:||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -7.59 kcal/mol@LB@Hybridization Energy -11.4771 kcal/mol@LB@Unfolding Energy - mRNA 2.95852 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 189 -- 198@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 44 -- 50@LB@ |
78 |
0.01669 |
0.6177 |
b2764 |
cysJ |
-9.29 |
0.057302 |
85 -- 99 |
53 -- 70 |
sulfite reductase alpha subunit flavoprotein |
|
_____________84_________________100\n_____________|__________________|\n5'-UUC...UUAGU__________________UUUAA...UUG-3'\n______________UAUCGCUAU___CCCGUC\n______________|||||||||___||||||\n______________AUAGCGAUA___GGGCAG\n3'-UUU...CGGUU_________ACC______UUUCU...ACA-5'\n_____________|__________________|\n_____________71_________________52\n |
87 -- 93 |
62 -- 68 |
-22.2411 kcal/mol |
2.01357 kcal/mol |
10.9351 kcal/mol |
84 100@LB@ | |@LB@5'-UUC...UUAGU UUUAA...UUG-3'@LB@ UAUCGCUAU CCCGUC@LB@ ||||||||| ||||||@LB@ AUAGCGAUA GGGCAG@LB@3'-UUU...CGGUU ACC UUUCU...ACA-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -22.2411 kcal/mol@LB@Unfolding Energy - mRNA 2.01357 kcal/mol@LB@Unfolding Energy - sRNA 10.9351 kcal/mol@LB@@LB@Position - mRNA 85 -- 99@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 62 -- 68@LB@ |
79 |
0.01695 |
0.6177 |
b0435 |
bolA |
-9.02 |
0.064980 |
184 -- 202 |
38 -- 55 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________183_________________203\n_____________|___________________|\n5'-UGA...GCGUU___G______AU_______GAUGA...CCG-3'\n______________GUC_GAGGAG__AUUUCAU\n______________|||_:|:|||__|||||||\n______________CAG_UUUCUC__UAAAGUA\n3'-UUU...CCGGG__________CU_______AAAAA...ACA-5'\n_____________|___________________|\n_____________56__________________37\n |
196 -- 202 |
38 -- 44 |
-15.2358 kcal/mol |
5.04311 kcal/mol |
1.17036 kcal/mol |
183 203@LB@ | |@LB@5'-UGA...GCGUU G AU GAUGA...CCG-3'@LB@ GUC GAGGAG AUUUCAU@LB@ ||| :|:||| |||||||@LB@ CAG UUUCUC UAAAGUA@LB@3'-UUU...CCGGG CU AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.2358 kcal/mol@LB@Unfolding Energy - mRNA 5.04311 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 184 -- 202@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 38 -- 44@LB@ |
80 |
0.01709 |
0.6177 |
b2498 |
upp |
-4.70 |
0.418803 |
173 -- 195 |
44 -- 70 |
uracil phosphoribosyltransferase |
|
_____________172_________________________196\n_____________|___________________________|\n5'-GGC...UUUUU___G___________C_______A___AGAGU...CCG-3'\n______________UGU_GCU____GCCC_UCAAAGG_GAA\n______________|:|_|||____||||_||||||:_|||\n______________AUA_CGA____CGGG_AGUUUCU_CUU\n3'-UUU...CGGUU___G___UAAC____C_______C___AAAGU...ACA-5'\n_____________|___________________________|\n_____________71__________________________43\n |
185 -- 191 |
48 -- 54 |
-22.3772 kcal/mol |
6.37003 kcal/mol |
11.3101 kcal/mol |
172 196@LB@ | |@LB@5'-GGC...UUUUU G C A AGAGU...CCG-3'@LB@ UGU GCU GCCC UCAAAGG GAA@LB@ |:| ||| |||| ||||||: |||@LB@ AUA CGA CGGG AGUUUCU CUU@LB@3'-UUU...CGGUU G UAAC C C AAAGU...ACA-5'@LB@ | |@LB@ 71 43@LB@@LB@@LB@Energy -4.70 kcal/mol@LB@Hybridization Energy -22.3772 kcal/mol@LB@Unfolding Energy - mRNA 6.37003 kcal/mol@LB@Unfolding Energy - sRNA 11.3101 kcal/mol@LB@@LB@Position - mRNA 173 -- 195@LB@Position - sRNA 44 -- 70@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 48 -- 54@LB@ |