111 |
0.02245 |
0.6177 |
b3413 |
gntX |
-10.38 |
0.034336 |
253 -- 267 |
41 -- 55 |
DNA catabolic protein |
|
_____________252_____________268\n_____________|_______________|\n5'-CCC...GUUAG____UU_________GUUCG...AUA-3'\n______________GUCA__GGGGGAUUU\n______________||||__|:||:||||\n______________CAGU__CUCCUUAAA\n3'-UUU...CCGGG____UU_________GUAAA...ACA-5'\n_____________|_______________|\n_____________56______________40\n |
261 -- 267 |
41 -- 47 |
-16.783 kcal/mol |
5.45091 kcal/mol |
0.947844 kcal/mol |
252 268@LB@ | |@LB@5'-CCC...GUUAG UU GUUCG...AUA-3'@LB@ GUCA GGGGGAUUU@LB@ |||| |:||:||||@LB@ CAGU CUCCUUAAA@LB@3'-UUU...CCGGG UU GUAAA...ACA-5'@LB@ | |@LB@ 56 40@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -16.783 kcal/mol@LB@Unfolding Energy - mRNA 5.45091 kcal/mol@LB@Unfolding Energy - sRNA 0.947844 kcal/mol@LB@@LB@Position - mRNA 253 -- 267@LB@Position - sRNA 41 -- 55@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 41 -- 47@LB@ |
112 |
0.02248 |
0.6177 |
b2796 |
sdaC |
-8.62 |
0.078257 |
115 -- 131 |
34 -- 50 |
putative serine transporter |
|
_____________114_______________132\n_____________|_________________|\n5'-AUC...CCGAU___CA____________ACGGU...CAA-3'\n______________AGA__GAUUUCAUUUUU\n______________|||__:|||||||||||\n______________UCU__UUAAAGUAAAAA\n3'-UUU...CAGUU___CC____________AAUAA...ACA-5'\n_____________|_________________|\n_____________51________________33\n |
125 -- 131 |
34 -- 40 |
-11.667 kcal/mol |
1.97198 kcal/mol |
1.0739 kcal/mol |
114 132@LB@ | |@LB@5'-AUC...CCGAU CA ACGGU...CAA-3'@LB@ AGA GAUUUCAUUUUU@LB@ ||| :|||||||||||@LB@ UCU UUAAAGUAAAAA@LB@3'-UUU...CAGUU CC AAUAA...ACA-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -11.667 kcal/mol@LB@Unfolding Energy - mRNA 1.97198 kcal/mol@LB@Unfolding Energy - sRNA 1.0739 kcal/mol@LB@@LB@Position - mRNA 115 -- 131@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 34 -- 40@LB@ |
113 |
0.02257 |
0.6177 |
b0915 |
lpxK |
-7.55 |
0.127690 |
105 -- 116 |
46 -- 56 |
lipid A 4'kinase |
|
_____________104__________117\n_____________|____________|\n5'-GAA...GUGGU_________U__UGUCA...GCU-3'\n______________CGUCGAGGA_GG\n______________||||:|:||_||\n______________GCAGUUUCU_CC\n3'-UUU...ACCGG____________UUAAA...ACA-5'\n_____________|____________|\n_____________57___________45\n |
107 -- 113 |
48 -- 54 |
-12.734 kcal/mol |
4.25329 kcal/mol |
0.93204 kcal/mol |
104 117@LB@ | |@LB@5'-GAA...GUGGU U UGUCA...GCU-3'@LB@ CGUCGAGGA GG@LB@ ||||:|:|| ||@LB@ GCAGUUUCU CC@LB@3'-UUU...ACCGG UUAAA...ACA-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -7.55 kcal/mol@LB@Hybridization Energy -12.734 kcal/mol@LB@Unfolding Energy - mRNA 4.25329 kcal/mol@LB@Unfolding Energy - sRNA 0.93204 kcal/mol@LB@@LB@Position - mRNA 105 -- 116@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 48 -- 54@LB@ |
114 |
0.02277 |
0.6177 |
b4077 |
gltP |
-4.92 |
0.386213 |
48 -- 56 |
47 -- 55 |
glutamate/aspartate:proton symporter |
|
_____________47________57\n_____________|_________|\n5'-GCC...CUGUU_________UUGCG...GCG-3'\n______________GUUAAAGGG\n______________||:||||:|\n______________CAGUUUCUC\n3'-UUU...CCGGG_________CUUAA...ACA-5'\n_____________|_________|\n_____________56________46\n |
50 -- 56 |
47 -- 53 |
-9.45392 kcal/mol |
3.63887 kcal/mol |
0.899516 kcal/mol |
47 57@LB@ | |@LB@5'-GCC...CUGUU UUGCG...GCG-3'@LB@ GUUAAAGGG@LB@ ||:||||:|@LB@ CAGUUUCUC@LB@3'-UUU...CCGGG CUUAA...ACA-5'@LB@ | |@LB@ 56 46@LB@@LB@@LB@Energy -4.92 kcal/mol@LB@Hybridization Energy -9.45392 kcal/mol@LB@Unfolding Energy - mRNA 3.63887 kcal/mol@LB@Unfolding Energy - sRNA 0.899516 kcal/mol@LB@@LB@Position - mRNA 48 -- 56@LB@Position - sRNA 47 -- 55@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 47 -- 53@LB@ |
115 |
0.02287 |
0.6177 |
b3621 |
waaC |
-10.02 |
0.040839 |
179 -- 191 |
44 -- 55 |
ADP-heptose:LPS heptosyl transferase I |
|
_____________178___________192\n_____________|_____________|\n5'-UUG...CUAUU____C________GCCUG...UUG-3'\n______________GUUA_AAGAGGAA\n______________||:|_||||||||\n______________CAGU_UUCUCCUU\n3'-UUU...CCGGG_____________AAAGU...ACA-5'\n_____________|_____________|\n_____________56____________43\n |
185 -- 191 |
44 -- 50 |
-12.6771 kcal/mol |
1.72007 kcal/mol |
0.941432 kcal/mol |
178 192@LB@ | |@LB@5'-UUG...CUAUU C GCCUG...UUG-3'@LB@ GUUA AAGAGGAA@LB@ ||:| ||||||||@LB@ CAGU UUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -12.6771 kcal/mol@LB@Unfolding Energy - mRNA 1.72007 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 44 -- 50@LB@ |
116 |
0.02318 |
0.6177 |
b1726 |
yniB |
-7.96 |
0.105879 |
188 -- 195 |
47 -- 54 |
putative inner membrane protein |
|
_____________187______196\n_____________|________|\n5'-AAG...CUUAA________AACUC...UGA-3'\n______________UCAAGGAG\n______________||||:|||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
189 -- 195 |
47 -- 53 |
-9.99546 kcal/mol |
1.13532 kcal/mol |
0.897871 kcal/mol |
187 196@LB@ | |@LB@5'-AAG...CUUAA AACUC...UGA-3'@LB@ UCAAGGAG@LB@ ||||:|||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -9.99546 kcal/mol@LB@Unfolding Energy - mRNA 1.13532 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 188 -- 195@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 47 -- 53@LB@ |
117 |
0.02321 |
0.6177 |
b1712 |
ihfA |
-8.91 |
0.068436 |
115 -- 126 |
45 -- 56 |
integration host factor (IHF) DNA-binding protein alpha subunit |
|
_____________114__________127\n_____________|____________|\n5'-CGU...ACACU__AA________GAUUG...AGA-3'\n______________CG__GAAGAGGA\n______________||__:|||||||\n______________GC__UUUCUCCU\n3'-UUU...ACCGG__AG________UAAAG...ACA-5'\n_____________|____________|\n_____________57___________44\n |
120 -- 126 |
45 -- 51 |
-12.2887 kcal/mol |
2.43966 kcal/mol |
0.938337 kcal/mol |
114 127@LB@ | |@LB@5'-CGU...ACACU AA GAUUG...AGA-3'@LB@ CG GAAGAGGA@LB@ || :|||||||@LB@ GC UUUCUCCU@LB@3'-UUU...ACCGG AG UAAAG...ACA-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -12.2887 kcal/mol@LB@Unfolding Energy - mRNA 2.43966 kcal/mol@LB@Unfolding Energy - sRNA 0.938337 kcal/mol@LB@@LB@Position - mRNA 115 -- 126@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 45 -- 51@LB@ |
118 |
0.0238 |
0.6177 |
b3321 |
rpsJ |
-9.75 |
0.046314 |
151 -- 177 |
30 -- 55 |
30S ribosomal subunit protein S10 |
|
_____________150___________________________178\n_____________|_____________________________|\n5'-UUC...AAUGG___U_________AA_______CG_____AAAAU...GUG-3'\n______________GUC___GAGGAGU__UCAUUUU__UUUAU\n______________|||___|||||:|__|||||||__|||||\n______________CAG___CUCCUUA__AGUAAAA__AAAUA\n3'-UUU...CCGGG___UUU_______A_______________AUAAU...ACA-5'\n_____________|_____________________________|\n_____________56____________________________29\n |
164 -- 170 |
35 -- 41 |
-16.2369 kcal/mol |
5.30163 kcal/mol |
1.18773 kcal/mol |
150 178@LB@ | |@LB@5'-UUC...AAUGG U AA CG AAAAU...GUG-3'@LB@ GUC GAGGAGU UCAUUUU UUUAU@LB@ ||| |||||:| ||||||| |||||@LB@ CAG CUCCUUA AGUAAAA AAAUA@LB@3'-UUU...CCGGG UUU A AUAAU...ACA-5'@LB@ | |@LB@ 56 29@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -16.2369 kcal/mol@LB@Unfolding Energy - mRNA 5.30163 kcal/mol@LB@Unfolding Energy - sRNA 1.18773 kcal/mol@LB@@LB@Position - mRNA 151 -- 177@LB@Position - sRNA 30 -- 55@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 35 -- 41@LB@ |
119 |
0.02381 |
0.6177 |
b1434 |
ydcN |
-8.41 |
0.086264 |
87 -- 94 |
43 -- 50 |
putative DNA-binding transcriptional regulator |
|
_____________86_______95\n_____________|________|\n5'-CGG...UGGGU________AGAAA...CUA-3'\n______________GGAGGAAU\n______________:|||||||\n______________UCUCCUUA\n3'-UUU...CAGUU________AAGUA...ACA-5'\n_____________|________|\n_____________51_______42\n |
88 -- 94 |
43 -- 49 |
-10.2233 kcal/mol |
0.967994 kcal/mol |
0.845564 kcal/mol |
86 95@LB@ | |@LB@5'-CGG...UGGGU AGAAA...CUA-3'@LB@ GGAGGAAU@LB@ :|||||||@LB@ UCUCCUUA@LB@3'-UUU...CAGUU AAGUA...ACA-5'@LB@ | |@LB@ 51 42@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -10.2233 kcal/mol@LB@Unfolding Energy - mRNA 0.967994 kcal/mol@LB@Unfolding Energy - sRNA 0.845564 kcal/mol@LB@@LB@Position - mRNA 87 -- 94@LB@Position - sRNA 43 -- 50@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 43 -- 49@LB@ |
120 |
0.02398 |
0.6177 |
b0283 |
paoD |
-10.02 |
0.040757 |
188 -- 198 |
44 -- 54 |
moco insertion factor for PaoABC aldehyde oxidoreductase |
|
_____________187_________199\n_____________|___________|\n5'-AGG...GUGGU___________CAAUG...AGG-3'\n______________UUAAGGAGGAA\n______________|:||:||||||\n______________AGUUUCUCCUU\n3'-UUU...CGGGC___________AAAGU...ACA-5'\n_____________|___________|\n_____________55__________43\n |
192 -- 198 |
44 -- 50 |
-12.5456 kcal/mol |
1.58604 kcal/mol |
0.939671 kcal/mol |
187 199@LB@ | |@LB@5'-AGG...GUGGU CAAUG...AGG-3'@LB@ UUAAGGAGGAA@LB@ |:||:||||||@LB@ AGUUUCUCCUU@LB@3'-UUU...CGGGC AAAGU...ACA-5'@LB@ | |@LB@ 55 43@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -12.5456 kcal/mol@LB@Unfolding Energy - mRNA 1.58604 kcal/mol@LB@Unfolding Energy - sRNA 0.939671 kcal/mol@LB@@LB@Position - mRNA 188 -- 198@LB@Position - sRNA 44 -- 54@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 44 -- 50@LB@ |