171 |
0.0346 |
0.6177 |
b1865 |
nudB |
-7.50 |
0.130652 |
189 -- 196 |
46 -- 53 |
dihydroneopterin triphosphate pyrophosphatase |
|
_____________188______197\n_____________|________|\n5'-UGA...GUCAA________CAGCG...CCG-3'\n______________CGAAGAGG\n______________|:||||||\n______________GUUUCUCC\n3'-UUU...GGGCA________UUAAA...ACA-5'\n_____________|________|\n_____________54_______45\n |
190 -- 196 |
46 -- 52 |
-10.7995 kcal/mol |
2.39118 kcal/mol |
0.910679 kcal/mol |
188 197@LB@ | |@LB@5'-UGA...GUCAA CAGCG...CCG-3'@LB@ CGAAGAGG@LB@ |:||||||@LB@ GUUUCUCC@LB@3'-UUU...GGGCA UUAAA...ACA-5'@LB@ | |@LB@ 54 45@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -10.7995 kcal/mol@LB@Unfolding Energy - mRNA 2.39118 kcal/mol@LB@Unfolding Energy - sRNA 0.910679 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 46 -- 53@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 46 -- 52@LB@ |
172 |
0.03476 |
0.6177 |
b3441 |
yhhY |
-9.34 |
0.055938 |
185 -- 193 |
45 -- 53 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
_____________184_______194\n_____________|_________|\n5'-CCC...UACCC_________CAAAG...UGC-3'\n______________CAAAGAGGA\n______________|||||||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
187 -- 193 |
45 -- 51 |
-12.8083 kcal/mol |
2.54681 kcal/mol |
0.917553 kcal/mol |
184 194@LB@ | |@LB@5'-CCC...UACCC CAAAG...UGC-3'@LB@ CAAAGAGGA@LB@ |||||||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -12.8083 kcal/mol@LB@Unfolding Energy - mRNA 2.54681 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 185 -- 193@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 45 -- 51@LB@ |
173 |
0.03478 |
0.6177 |
b1234 |
rssA |
-4.70 |
0.418234 |
181 -- 188 |
43 -- 50 |
putative patatin-like family phospholipase |
|
_____________180______189\n_____________|________|\n5'-GAU...AUUCC________CUUGC...AAA-3'\n______________AGGGGAAU\n______________||:|||||\n______________UCUCCUUA\n3'-UUU...CAGUU________AAGUA...ACA-5'\n_____________|________|\n_____________51_______42\n |
182 -- 188 |
43 -- 49 |
-9.05148 kcal/mol |
3.5051 kcal/mol |
0.845564 kcal/mol |
180 189@LB@ | |@LB@5'-GAU...AUUCC CUUGC...AAA-3'@LB@ AGGGGAAU@LB@ ||:|||||@LB@ UCUCCUUA@LB@3'-UUU...CAGUU AAGUA...ACA-5'@LB@ | |@LB@ 51 42@LB@@LB@@LB@Energy -4.70 kcal/mol@LB@Hybridization Energy -9.05148 kcal/mol@LB@Unfolding Energy - mRNA 3.5051 kcal/mol@LB@Unfolding Energy - sRNA 0.845564 kcal/mol@LB@@LB@Position - mRNA 181 -- 188@LB@Position - sRNA 43 -- 50@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 43 -- 49@LB@ |
174 |
0.03548 |
0.6177 |
b2437 |
eutR |
-7.66 |
0.121193 |
279 -- 299 |
38 -- 55 |
eut operon transcriptional activator AraC family |
|
_____________278___________________300\n_____________|_____________________|\n5'-CGC...CGAAG_______U___UAAUG_____C-3'\n______________GUCGAAG_GGA_____UUCAU\n______________|||:|||_|||_____|||||\n______________CAGUUUC_CCU_____AAGUA\n3'-UUU...CCGGG_______U___UA________AAAAA...ACA-5'\n_____________|_____________________|\n_____________56____________________37\n |
279 -- 285 |
49 -- 55 |
-15.2982 kcal/mol |
6.46344 kcal/mol |
1.17036 kcal/mol |
278 300@LB@ | |@LB@5'-CGC...CGAAG U UAAUG C-3'@LB@ GUCGAAG GGA UUCAU@LB@ |||:||| ||| |||||@LB@ CAGUUUC CCU AAGUA@LB@3'-UUU...CCGGG U UA AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -15.2982 kcal/mol@LB@Unfolding Energy - mRNA 6.46344 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 279 -- 299@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 49 -- 55@LB@ |
175 |
0.03585 |
0.6177 |
b2028 |
ugd |
-9.30 |
0.056993 |
217 -- 248 |
46 -- 74 |
UDP-glucose 6-dehydrogenase |
|
_____________216______________________________249\n_____________|________________________________|\n5'-GCU...CAUUU______C_G_____GUA___________C___CUUCU...CAC-3'\n______________CCGGUA_U_GCUAU___GGCUUGUCAAA_GGG\n______________||::||_|_|||||___|||::||||||_:||\n______________GGUUAU_A_CGAUA___CCGGGCAGUUU_UCC\n3'-UUU...UUACC________G_____A_____________C___UUAAA...ACA-5'\n_____________|________________________________|\n_____________75_______________________________45\n |
238 -- 244 |
50 -- 56 |
-30.8605 kcal/mol |
10.2215 kcal/mol |
11.335 kcal/mol |
216 249@LB@ | |@LB@5'-GCU...CAUUU C G GUA C CUUCU...CAC-3'@LB@ CCGGUA U GCUAU GGCUUGUCAAA GGG@LB@ ||::|| | ||||| |||::|||||| :||@LB@ GGUUAU A CGAUA CCGGGCAGUUU UCC@LB@3'-UUU...UUACC G A C UUAAA...ACA-5'@LB@ | |@LB@ 75 45@LB@@LB@@LB@Energy -9.30 kcal/mol@LB@Hybridization Energy -30.8605 kcal/mol@LB@Unfolding Energy - mRNA 10.2215 kcal/mol@LB@Unfolding Energy - sRNA 11.335 kcal/mol@LB@@LB@Position - mRNA 217 -- 248@LB@Position - sRNA 46 -- 74@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 50 -- 56@LB@ |
176 |
0.03596 |
0.6177 |
b1747 |
astA |
-4.82 |
0.399998 |
129 -- 139 |
46 -- 56 |
arginine succinyltransferase |
|
_____________128_________140\n_____________|___________|\n5'-GGC...GUCAG__AA_______UGACG...AAG-3'\n______________CG__GAAGAGG\n______________||__:||||||\n______________GC__UUUCUCC\n3'-UUU...ACCGG__AG_______UUAAA...ACA-5'\n_____________|___________|\n_____________57__________45\n |
133 -- 139 |
46 -- 52 |
-9.86744 kcal/mol |
4.11365 kcal/mol |
0.93204 kcal/mol |
128 140@LB@ | |@LB@5'-GGC...GUCAG AA UGACG...AAG-3'@LB@ CG GAAGAGG@LB@ || :||||||@LB@ GC UUUCUCC@LB@3'-UUU...ACCGG AG UUAAA...ACA-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -4.82 kcal/mol@LB@Hybridization Energy -9.86744 kcal/mol@LB@Unfolding Energy - mRNA 4.11365 kcal/mol@LB@Unfolding Energy - sRNA 0.93204 kcal/mol@LB@@LB@Position - mRNA 129 -- 139@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 46 -- 52@LB@ |
177 |
0.03616 |
0.6177 |
b1474 |
fdnG |
-8.74 |
0.074199 |
188 -- 196 |
44 -- 52 |
formate dehydrogenase-N alpha subunit nitrate-inducible |
b3894 |
_____________187_______197\n_____________|_________|\n5'-AUU...UGAAA_________AGCAA...CUC-3'\n______________AAAGAGGAA\n______________|||||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
190 -- 196 |
44 -- 50 |
-11.3772 kcal/mol |
1.78024 kcal/mol |
0.860683 kcal/mol |
187 197@LB@ | |@LB@5'-AUU...UGAAA AGCAA...CUC-3'@LB@ AAAGAGGAA@LB@ |||||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -11.3772 kcal/mol@LB@Unfolding Energy - mRNA 1.78024 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 188 -- 196@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |
178 |
0.03627 |
0.6177 |
b0924 |
mukB |
-9.59 |
0.049840 |
186 -- 195 |
44 -- 53 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________185________196\n_____________|__________|\n5'-UGG...GAUAG__________GAAUA...CUG-3'\n______________CGGAGAGGAA\n______________|::|||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
189 -- 195 |
44 -- 50 |
-13.8471 kcal/mol |
3.32824 kcal/mol |
0.927997 kcal/mol |
185 196@LB@ | |@LB@5'-UGG...GAUAG GAAUA...CUG-3'@LB@ CGGAGAGGAA@LB@ |::|||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.8471 kcal/mol@LB@Unfolding Energy - mRNA 3.32824 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
179 |
0.03684 |
0.6177 |
b0335 |
prpE |
-7.81 |
0.113441 |
203 -- 221 |
38 -- 55 |
propionate--CoA ligase |
|
_____________202_________________222\n_____________|___________________|\n5'-GCC...AUUAU___UUUU__C_________CAGCG...AAA-3'\n______________GUC____AG_GAAUUUUAU\n______________|||____||_||||||:||\n______________CAG____UC_CUUAAAGUA\n3'-UUU...CCGGG___UUUC____________AAAAA...ACA-5'\n_____________|___________________|\n_____________56__________________37\n |
215 -- 221 |
38 -- 44 |
-10.8576 kcal/mol |
1.87676 kcal/mol |
1.17036 kcal/mol |
202 222@LB@ | |@LB@5'-GCC...AUUAU UUUU C CAGCG...AAA-3'@LB@ GUC AG GAAUUUUAU@LB@ ||| || ||||||:||@LB@ CAG UC CUUAAAGUA@LB@3'-UUU...CCGGG UUUC AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -10.8576 kcal/mol@LB@Unfolding Energy - mRNA 1.87676 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 38 -- 44@LB@ |
180 |
0.03697 |
0.6177 |
b1325 |
ycjG |
-6.24 |
0.226397 |
189 -- 195 |
47 -- 53 |
L-Ala-D/L-Glu epimerase |
|
_____________188_____196\n_____________|_______|\n5'-AAG...GACAA_______UAAAG...AAC-3'\n______________CAAGGAG\n______________|||:|||\n______________GUUUCUC\n3'-UUU...GGGCA_______CUUAA...ACA-5'\n_____________|_______|\n_____________54______46\n |
189 -- 195 |
47 -- 53 |
-8.11062 kcal/mol |
0.981925 kcal/mol |
0.886139 kcal/mol |
188 196@LB@ | |@LB@5'-AAG...GACAA UAAAG...AAC-3'@LB@ CAAGGAG@LB@ |||:|||@LB@ GUUUCUC@LB@3'-UUU...GGGCA CUUAA...ACA-5'@LB@ | |@LB@ 54 46@LB@@LB@@LB@Energy -6.24 kcal/mol@LB@Hybridization Energy -8.11062 kcal/mol@LB@Unfolding Energy - mRNA 0.981925 kcal/mol@LB@Unfolding Energy - sRNA 0.886139 kcal/mol@LB@@LB@Position - mRNA 189 -- 195@LB@Position - sRNA 47 -- 53@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 47 -- 53@LB@ |