131 |
0.02569 |
0.6177 |
b0848 |
ybjM |
-8.44 |
0.085177 |
187 -- 197 |
44 -- 55 |
inner membrane protein |
|
_____________186__________198\n_____________|____________|\n5'-GAA...GCAGU____________CGAGU...GGG-3'\n______________GUC_AGGAGGAA\n______________|||_|:||||||\n______________CAG_UUCUCCUU\n3'-UUU...CCGGG___U________AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
191 -- 197 |
44 -- 50 |
-13.6185 kcal/mol |
4.23971 kcal/mol |
0.941432 kcal/mol |
186 198@LB@ | |@LB@5'-GAA...GCAGU CGAGU...GGG-3'@LB@ GUC AGGAGGAA@LB@ ||| |:||||||@LB@ CAG UUCUCCUU@LB@3'-UUU...CCGGG U AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -13.6185 kcal/mol@LB@Unfolding Energy - mRNA 4.23971 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 187 -- 197@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 44 -- 50@LB@ |
132 |
0.02588 |
0.6177 |
b3180 |
yhbY |
-5.98 |
0.252347 |
290 -- 297 |
46 -- 53 |
RNA binding protein associated with pre-50S ribosomal subunits |
|
_____________289______298\n_____________|________|\n5'-CUG...UUGAC________UGC-3'\n______________CGAAGGGG\n______________|:|||:||\n______________GUUUCUCC\n3'-UUU...GGGCA________UUAAA...ACA-5'\n_____________|________|\n_____________54_______45\n |
291 -- 297 |
46 -- 52 |
-10.2464 kcal/mol |
3.35117 kcal/mol |
0.910679 kcal/mol |
289 298@LB@ | |@LB@5'-CUG...UUGAC UGC-3'@LB@ CGAAGGGG@LB@ |:|||:||@LB@ GUUUCUCC@LB@3'-UUU...GGGCA UUAAA...ACA-5'@LB@ | |@LB@ 54 45@LB@@LB@@LB@Energy -5.98 kcal/mol@LB@Hybridization Energy -10.2464 kcal/mol@LB@Unfolding Energy - mRNA 3.35117 kcal/mol@LB@Unfolding Energy - sRNA 0.910679 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 46 -- 53@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 46 -- 52@LB@ |
133 |
0.02604 |
0.6177 |
b0876 |
ybjD |
-5.23 |
0.342712 |
179 -- 199 |
45 -- 55 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________178___________________200\n_____________|_____________________|\n5'-CGU...GAUAA____CAUAUUUCUG_______UAUGA...GGG-3'\n______________GUCA__________GAGGGGA\n______________||||__________:||:|||\n______________CAGU__________UUCUCCU\n3'-UUU...CCGGG_____________________UAAAG...ACA-5'\n_____________|_____________________|\n_____________56____________________44\n |
193 -- 199 |
45 -- 51 |
-10.7419 kcal/mol |
4.58374 kcal/mol |
0.930875 kcal/mol |
178 200@LB@ | |@LB@5'-CGU...GAUAA CAUAUUUCUG UAUGA...GGG-3'@LB@ GUCA GAGGGGA@LB@ |||| :||:|||@LB@ CAGU UUCUCCU@LB@3'-UUU...CCGGG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -5.23 kcal/mol@LB@Hybridization Energy -10.7419 kcal/mol@LB@Unfolding Energy - mRNA 4.58374 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 179 -- 199@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 45 -- 51@LB@ |
134 |
0.02619 |
0.6177 |
b1126 |
potA |
-9.47 |
0.052791 |
285 -- 299 |
37 -- 55 |
spermidine/putrescine ABC transporter ATPase |
|
_____________284_________________300\n_____________|___________________|\n5'-CAA...UUGAU_GU________________C-3'\n______________G__AAAGAGG____UCAUU\n______________|__|||||||____|||||\n______________C__UUUCUCC____AGUAA\n3'-UUU...CCGGG_AG_______UUAA_____AAAAA...ACA-5'\n_____________|___________________|\n_____________56__________________36\n |
288 -- 294 |
46 -- 52 |
-11.4861 kcal/mol |
0.840334 kcal/mol |
1.17789 kcal/mol |
284 300@LB@ | |@LB@5'-CAA...UUGAU GU C-3'@LB@ G AAAGAGG UCAUU@LB@ | ||||||| |||||@LB@ C UUUCUCC AGUAA@LB@3'-UUU...CCGGG AG UUAA AAAAA...ACA-5'@LB@ | |@LB@ 56 36@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -11.4861 kcal/mol@LB@Unfolding Energy - mRNA 0.840334 kcal/mol@LB@Unfolding Energy - sRNA 1.17789 kcal/mol@LB@@LB@Position - mRNA 285 -- 299@LB@Position - sRNA 37 -- 55@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 46 -- 52@LB@ |
135 |
0.02628 |
0.6177 |
b3547 |
yhjX |
-9.70 |
0.047334 |
158 -- 184 |
28 -- 55 |
pyruvate-inducible inner membrane protein putative transporter |
|
_____________157___________________________185\n_____________|_____________________________|\n5'-UAA...UGGUU_____C____AUU____C___________CUGCA...UUA-3'\n______________GUCGG_AGAG___UUUC___UUUUUAUUA\n______________|||::_||||___||||___|||||||||\n______________CAGUU_UCUC___AAAG___AAAAAUAAU\n3'-UUU...CCGGG__________CUU____UAA_________AAUAC...ACA-5'\n_____________|_____________________________|\n_____________56____________________________27\n |
178 -- 184 |
28 -- 34 |
-15.2509 kcal/mol |
4.36169 kcal/mol |
1.18814 kcal/mol |
157 185@LB@ | |@LB@5'-UAA...UGGUU C AUU C CUGCA...UUA-3'@LB@ GUCGG AGAG UUUC UUUUUAUUA@LB@ |||:: |||| |||| |||||||||@LB@ CAGUU UCUC AAAG AAAAAUAAU@LB@3'-UUU...CCGGG CUU UAA AAUAC...ACA-5'@LB@ | |@LB@ 56 27@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -15.2509 kcal/mol@LB@Unfolding Energy - mRNA 4.36169 kcal/mol@LB@Unfolding Energy - sRNA 1.18814 kcal/mol@LB@@LB@Position - mRNA 158 -- 184@LB@Position - sRNA 28 -- 55@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 28 -- 34@LB@ |
136 |
0.02642 |
0.6177 |
b4036 |
lamB |
-8.19 |
0.095416 |
26 -- 54 |
55 -- 84 |
maltose outer membrane porin (maltoporin) |
|
_____________25_____________________________55\n_____________|______________________________|\n5'-CGC...GGUAG_____________CAU_______C______CCGCC...GUU-3'\n______________AAGAAGGU_GCCA___UCGCUAU_GGCCUG\n______________||:||::|_||||___|||||||_||||:|\n______________UUUUUUUA_CGGU___AGCGAUA_CCGGGC\n___________3'-________C____UAU_______A______AGUUU...ACA-5'\n______________|_____________________________|\n______________84____________________________54\n |
41 -- 47 |
62 -- 68 |
-32.2235 kcal/mol |
10.7352 kcal/mol |
13.2983 kcal/mol |
25 55@LB@ | |@LB@5'-CGC...GGUAG CAU C CCGCC...GUU-3'@LB@ AAGAAGGU GCCA UCGCUAU GGCCUG@LB@ ||:||::| |||| ||||||| ||||:|@LB@ UUUUUUUA CGGU AGCGAUA CCGGGC@LB@ 3'- C UAU A AGUUU...ACA-5'@LB@ | |@LB@ 84 54@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -32.2235 kcal/mol@LB@Unfolding Energy - mRNA 10.7352 kcal/mol@LB@Unfolding Energy - sRNA 13.2983 kcal/mol@LB@@LB@Position - mRNA 26 -- 54@LB@Position - sRNA 55 -- 84@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 62 -- 68@LB@ |
137 |
0.02646 |
0.6177 |
b3807 |
cyaY |
-4.99 |
0.375460 |
213 -- 221 |
38 -- 46 |
iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein |
|
_____________212_______222\n_____________|_________|\n5'-UGA...ACAGU_________CGCCU...AAA-3'\n______________GAAUUUCAU\n______________|||||||||\n______________CUUAAAGUA\n3'-UUU...UUCUC_________AAAAA...ACA-5'\n_____________|_________|\n_____________47________37\n |
215 -- 221 |
38 -- 44 |
-7.89908 kcal/mol |
1.90809 kcal/mol |
1.00074 kcal/mol |
212 222@LB@ | |@LB@5'-UGA...ACAGU CGCCU...AAA-3'@LB@ GAAUUUCAU@LB@ |||||||||@LB@ CUUAAAGUA@LB@3'-UUU...UUCUC AAAAA...ACA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -4.99 kcal/mol@LB@Hybridization Energy -7.89908 kcal/mol@LB@Unfolding Energy - mRNA 1.90809 kcal/mol@LB@Unfolding Energy - sRNA 1.00074 kcal/mol@LB@@LB@Position - mRNA 213 -- 221@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 38 -- 44@LB@ |
138 |
0.02658 |
0.6177 |
b2331 |
smrB |
-9.17 |
0.060779 |
224 -- 232 |
45 -- 53 |
putative DNA endonuclease |
|
_____________223_______233\n_____________|_________|\n5'-UCA...CUUAG_________CCAGG...GAC-3'\n______________CGAGGAGGA\n______________|:|:|||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
226 -- 232 |
45 -- 51 |
-12.8038 kcal/mol |
2.72026 kcal/mol |
0.917553 kcal/mol |
223 233@LB@ | |@LB@5'-UCA...CUUAG CCAGG...GAC-3'@LB@ CGAGGAGGA@LB@ |:|:|||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.17 kcal/mol@LB@Hybridization Energy -12.8038 kcal/mol@LB@Unfolding Energy - mRNA 2.72026 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 224 -- 232@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 45 -- 51@LB@ |
139 |
0.02683 |
0.6177 |
b1474 |
fdnG |
-8.74 |
0.074199 |
188 -- 196 |
44 -- 52 |
formate dehydrogenase-N alpha subunit nitrate-inducible |
b3894 |
_____________187_______197\n_____________|_________|\n5'-AUU...UGAAA_________AGCAA...CUC-3'\n______________AAAGAGGAA\n______________|||||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
190 -- 196 |
44 -- 50 |
-11.3772 kcal/mol |
1.78024 kcal/mol |
0.860683 kcal/mol |
187 197@LB@ | |@LB@5'-AUU...UGAAA AGCAA...CUC-3'@LB@ AAAGAGGAA@LB@ |||||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -11.3772 kcal/mol@LB@Unfolding Energy - mRNA 1.78024 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 188 -- 196@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |
140 |
0.02703 |
0.6177 |
b3447 |
ggt |
-5.41 |
0.319095 |
66 -- 81 |
38 -- 54 |
gamma-glutamyltranspeptidase |
|
_____________65________________82\n_____________|_________________|\n5'-GUU...AAGAA________UC_______CGCGU...CGU-3'\n______________UCAGA_AG__GUUUCAU\n______________|||:|_||__:||||||\n______________AGUUU_UC__UAAAGUA\n3'-UUU...CGGGC_____C__CU_______AAAAA...ACA-5'\n_____________|_________________|\n_____________55________________37\n |
75 -- 81 |
38 -- 44 |
-8.61894 kcal/mol |
2.03989 kcal/mol |
1.17036 kcal/mol |
65 82@LB@ | |@LB@5'-GUU...AAGAA UC CGCGU...CGU-3'@LB@ UCAGA AG GUUUCAU@LB@ |||:| || :||||||@LB@ AGUUU UC UAAAGUA@LB@3'-UUU...CGGGC C CU AAAAA...ACA-5'@LB@ | |@LB@ 55 37@LB@@LB@@LB@Energy -5.41 kcal/mol@LB@Hybridization Energy -8.61894 kcal/mol@LB@Unfolding Energy - mRNA 2.03989 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 66 -- 81@LB@Position - sRNA 38 -- 54@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 38 -- 44@LB@ |