| 152 |
0.007399 |
0.1668 |
b0591 |
entS |
-13.87 |
0.039944 |
258 -- 287 |
45 -- 70 |
enterobactin exporter iron-regulated |
|
_____________257____________________________288\n_____________|______________________________|\n5'-AAU...CGUUU_________UUCC___CUC______U____AUUGU...UGG-3'\n______________CGCGCAGUA____UCG___GUUUCA_CUCA\n______________|:|:|||:|____|||___||||||_||||\n______________GUGUGUCGU____AGC___CAAAGU_GAGU\n3'-UUU...CUGAU_________UA_____AA____________CCCCU...GCA-5'\n_____________|______________________________|\n_____________71_____________________________44\n |
260 -- 266 |
62 -- 68 |
-23.1768 kcal/mol |
5.59312 kcal/mol |
3.71317 kcal/mol |
257 288@LB@ | |@LB@5'-AAU...CGUUU UUCC CUC U AUUGU...UGG-3'@LB@ CGCGCAGUA UCG GUUUCA CUCA@LB@ |:|:|||:| ||| |||||| ||||@LB@ GUGUGUCGU AGC CAAAGU GAGU@LB@3'-UUU...CUGAU UA AA CCCCU...GCA-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -23.1768 kcal/mol@LB@Unfolding Energy - mRNA 5.59312 kcal/mol@LB@Unfolding Energy - sRNA 3.71317 kcal/mol@LB@@LB@Position - mRNA 258 -- 287@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 159 |
0.007688 |
0.1668 |
b0454 |
ybaZ |
-17.74 |
0.003345 |
226 -- 245 |
34 -- 52 |
excision repair protein alkyltransferase-like protein ATL |
|
_____________225__________________246\n_____________|____________________|\n5'-AGG...GCGAC__________C_UU______GAUUA...UUC-3'\n______________UUCACUCGGG_G__UUUCCA\n______________|||||||:||_|__||||||\n______________AAGUGAGUCC_C__AAAGGU\n3'-UUU...CAACA____________CU______ACGAA...GCA-5'\n_____________|____________________|\n_____________53___________________33\n |
229 -- 235 |
43 -- 49 |
-23.7092 kcal/mol |
4.0826 kcal/mol |
1.88482 kcal/mol |
225 246@LB@ | |@LB@5'-AGG...GCGAC C UU GAUUA...UUC-3'@LB@ UUCACUCGGG G UUUCCA@LB@ |||||||:|| | ||||||@LB@ AAGUGAGUCC C AAAGGU@LB@3'-UUU...CAACA CU ACGAA...GCA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -17.74 kcal/mol@LB@Hybridization Energy -23.7092 kcal/mol@LB@Unfolding Energy - mRNA 4.0826 kcal/mol@LB@Unfolding Energy - sRNA 1.88482 kcal/mol@LB@@LB@Position - mRNA 226 -- 245@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 65 |
0.002677 |
0.1417 |
b0584 |
fepA |
-11.47 |
0.132508 |
209 -- 249 |
37 -- 78 |
ferrienterobactin outer membrane transporter |
|
_____________208___________________________________________250\n_____________|_____________________________________________|\n5'-GAA...AACAA___________U_CCU___C________G____A__U________AUGGG...ACG-3'\n______________GAAGAUU_CAU_C___GGC___UUGUUG__UCA_UC_GGGGAUUU\n______________:||||:|_||:_|___:||___|:||||__|||_||_||||||||\n______________UUUCUGA_GUG_G___UCG___AGCAAC__AGU_AG_CCCCUAAA\n3'-UUU...ACCCG_______U___U_______UUA______AA___G__U________GGUAC...GCA-5'\n_____________|_____________________________________________|\n_____________79____________________________________________36\n |
243 -- 249 |
37 -- 43 |
-30.6633 kcal/mol |
14.4176 kcal/mol |
4.77973 kcal/mol |
208 250@LB@ | |@LB@5'-GAA...AACAA U CCU C G A U AUGGG...ACG-3'@LB@ GAAGAUU CAU C GGC UUGUUG UCA UC GGGGAUUU@LB@ :||||:| ||: | :|| |:|||| ||| || ||||||||@LB@ UUUCUGA GUG G UCG AGCAAC AGU AG CCCCUAAA@LB@3'-UUU...ACCCG U U UUA AA G U GGUAC...GCA-5'@LB@ | |@LB@ 79 36@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -30.6633 kcal/mol@LB@Unfolding Energy - mRNA 14.4176 kcal/mol@LB@Unfolding Energy - sRNA 4.77973 kcal/mol@LB@@LB@Position - mRNA 209 -- 249@LB@Position - sRNA 37 -- 78@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 6 |
1.32e-05 |
0.00774 |
b0475 |
hemH |
-21.46 |
0.000115 |
123 -- 162 |
34 -- 75 |
ferrochelatase |
|
_____________122__________________________________________163\n_____________|____________________________________________|\n5'-CGG...GAUUU___CU_U__________A___CUUC________CU_________CUACA...GCG-3'\n______________GAC__C_CACAGCAAUU_GUU____UUC_CUCA_____UUUCCG\n______________|||__|_||||||||||_|||____|||_||||_____|||||:\n______________CUG__G_GUGUCGUUAA_CAA____AAG_GAGU_____AAAGGU\n3'-UUU...CGUUU___AU_U__________G___CA_____U____CCCCU______ACGAA...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________33\n |
133 -- 139 |
59 -- 65 |
-29.8744 kcal/mol |
3.60304 kcal/mol |
4.816 kcal/mol |
122 163@LB@ | |@LB@5'-CGG...GAUUU CU U A CUUC CU CUACA...GCG-3'@LB@ GAC C CACAGCAAUU GUU UUC CUCA UUUCCG@LB@ ||| | |||||||||| ||| ||| |||| |||||:@LB@ CUG G GUGUCGUUAA CAA AAG GAGU AAAGGU@LB@3'-UUU...CGUUU AU U G CA U CCCCU ACGAA...GCA-5'@LB@ | |@LB@ 76 33@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -29.8744 kcal/mol@LB@Unfolding Energy - mRNA 3.60304 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 123 -- 162@LB@Position - sRNA 34 -- 75@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 105 |
0.004683 |
0.1538 |
b3349 |
slyD |
-10.61 |
0.192215 |
166 -- 197 |
39 -- 73 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________165_________________________________198\n_____________|___________________________________|\n5'-UGU...ACAAU___________U____UUCCCAU________A___AUCAU...ACU-3'\n______________CUGCGC_CA_C_AUUC________GCUCAGG_GAU\n______________||:|:|_||_|_||||________:||||||_|||\n______________GAUGUG_GU_G_UAAG________UGAGUCC_CUA\n3'-UUU...UUUCU______U__C_U____CAACAAAG_______C___AAGGU...GCA-5'\n_____________|___________________________________|\n_____________74__________________________________38\n |
187 -- 193 |
43 -- 49 |
-23.2642 kcal/mol |
7.88699 kcal/mol |
4.77295 kcal/mol |
165 198@LB@ | |@LB@5'-UGU...ACAAU U UUCCCAU A AUCAU...ACU-3'@LB@ CUGCGC CA C AUUC GCUCAGG GAU@LB@ ||:|:| || | |||| :|||||| |||@LB@ GAUGUG GU G UAAG UGAGUCC CUA@LB@3'-UUU...UUUCU U C U CAACAAAG C AAGGU...GCA-5'@LB@ | |@LB@ 74 38@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -23.2642 kcal/mol@LB@Unfolding Energy - mRNA 7.88699 kcal/mol@LB@Unfolding Energy - sRNA 4.77295 kcal/mol@LB@@LB@Position - mRNA 166 -- 197@LB@Position - sRNA 39 -- 73@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 21 |
0.0001827 |
0.02926 |
b1937 |
fliE |
-13.91 |
0.039102 |
192 -- 221 |
38 -- 77 |
flagellar basal-body component |
|
_____________191________________________________________222\n_____________|__________________________________________|\n5'-CUG...UCCGG_____GAGA___U_______A_____________________GAAGG...GUU-3'\n______________GAGAC____AUG_CAGCGAU_____________CAGGGGAUU\n______________:||||____|::_||||:||_____________|||||||||\n______________UUCUG____UGU_GUCGUUA_____________GUCCCCUAA\n3'-UUU...CCCGU_____AUG____________AGCAACAAAGUGA_________AGGUA...GCA-5'\n_____________|__________________________________________|\n_____________78_________________________________________37\n |
215 -- 221 |
38 -- 44 |
-25.7557 kcal/mol |
7.06678 kcal/mol |
4.77969 kcal/mol |
191 222@LB@ | |@LB@5'-CUG...UCCGG GAGA U A GAAGG...GUU-3'@LB@ GAGAC AUG CAGCGAU CAGGGGAUU@LB@ :|||| |:: ||||:|| |||||||||@LB@ UUCUG UGU GUCGUUA GUCCCCUAA@LB@3'-UUU...CCCGU AUG AGCAACAAAGUGA AGGUA...GCA-5'@LB@ | |@LB@ 78 37@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -25.7557 kcal/mol@LB@Unfolding Energy - mRNA 7.06678 kcal/mol@LB@Unfolding Energy - sRNA 4.77969 kcal/mol@LB@@LB@Position - mRNA 192 -- 221@LB@Position - sRNA 38 -- 77@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 95 |
0.004386 |
0.1538 |
b1083 |
flgL |
-11.72 |
0.118200 |
146 -- 194 |
40 -- 76 |
flagellar hook-filament junction protein |
|
_____________145_________________________________________________195\n_____________|___________________________________________________|\n5'-UUG...UCUGC____G___A______________AUGCGCUGAUUAACA______A______GAUAA...GUA-3'\n______________AGAC_GCA_AC_GCGAUUU_UUG_______________UUCGCU_AGGGGA\n______________||||_:||_||_||:|||:_|||_______________|||:||_||||||\n______________UCUG_UGU_UG_CGUUAAG_AAC_______________AAGUGA_UCCCCU\n3'-UUU...CCGUU____A___G__U_______C___A____________________G______AAAGG...GCA-5'\n_____________|___________________________________________________|\n_____________77__________________________________________________39\n |
157 -- 163 |
58 -- 64 |
-28.9648 kcal/mol |
12.4692 kcal/mol |
4.77843 kcal/mol |
145 195@LB@ | |@LB@5'-UUG...UCUGC G A AUGCGCUGAUUAACA A GAUAA...GUA-3'@LB@ AGAC GCA AC GCGAUUU UUG UUCGCU AGGGGA@LB@ |||| :|| || ||:|||: ||| |||:|| ||||||@LB@ UCUG UGU UG CGUUAAG AAC AAGUGA UCCCCU@LB@3'-UUU...CCGUU A G U C A G AAAGG...GCA-5'@LB@ | |@LB@ 77 39@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -28.9648 kcal/mol@LB@Unfolding Energy - mRNA 12.4692 kcal/mol@LB@Unfolding Energy - sRNA 4.77843 kcal/mol@LB@@LB@Position - mRNA 146 -- 194@LB@Position - sRNA 40 -- 76@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 69 |
0.002809 |
0.1417 |
b1925 |
fliS |
-16.42 |
0.008504 |
133 -- 153 |
57 -- 74 |
flagellar protein potentiates polymerization |
|
_____________132___________________154\n_____________|_____________________|\n5'-UUA...CAGCA_____UUA_____________AAAAC...AUG-3'\n______________GCUAC___ACGCAGCAGUUCG\n______________:||||___||:|||||:||||\n______________UGAUG___UGUGUCGUUAAGC\n3'-UUU...GUUUC_____________________AACAA...GCA-5'\n_____________|_____________________|\n_____________75____________________56\n |
147 -- 153 |
57 -- 63 |
-25.0139 kcal/mol |
5.019 kcal/mol |
3.57148 kcal/mol |
132 154@LB@ | |@LB@5'-UUA...CAGCA UUA AAAAC...AUG-3'@LB@ GCUAC ACGCAGCAGUUCG@LB@ :|||| ||:|||||:||||@LB@ UGAUG UGUGUCGUUAAGC@LB@3'-UUU...GUUUC AACAA...GCA-5'@LB@ | |@LB@ 75 56@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.0139 kcal/mol@LB@Unfolding Energy - mRNA 5.019 kcal/mol@LB@Unfolding Energy - sRNA 3.57148 kcal/mol@LB@@LB@Position - mRNA 133 -- 153@LB@Position - sRNA 57 -- 74@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 164 |
0.007775 |
0.1668 |
b2097 |
fbaB |
-9.67 |
0.277966 |
247 -- 265 |
48 -- 68 |
fructose-bisphosphate aldolase class I |
|
_____________246___________________266\n_____________|_____________________|\n5'-AAU...CCUUU_______C________A_G__AAUUC...AUG-3'\n______________UACAGCA___CGUUGU_U_AC\n______________:||||||___||||||_|_||\n______________GUGUCGU___GCAACA_A_UG\n3'-UUU...GAUGU_______UAA______A_G__AGUCC...GCA-5'\n_____________|_____________________|\n_____________69____________________47\n |
247 -- 253 |
62 -- 68 |
-18.0796 kcal/mol |
4.78239 kcal/mol |
3.63277 kcal/mol |
246 266@LB@ | |@LB@5'-AAU...CCUUU C A G AAUUC...AUG-3'@LB@ UACAGCA CGUUGU U AC@LB@ :|||||| |||||| | ||@LB@ GUGUCGU GCAACA A UG@LB@3'-UUU...GAUGU UAA A G AGUCC...GCA-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -18.0796 kcal/mol@LB@Unfolding Energy - mRNA 4.78239 kcal/mol@LB@Unfolding Energy - sRNA 3.63277 kcal/mol@LB@@LB@Position - mRNA 247 -- 265@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 23 |
0.0001955 |
0.02926 |
b3846 |
fadB |
-13.56 |
0.047358 |
39 -- 83 |
35 -- 77 |
fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________38________________________________________________84\n_____________|_________________________________________________|\n5'-AGU...ACCUU___U__C_____CUU____CA____________C___A_C_U_______GCCGA...CUG-3'\n______________AAG_CU_CGCAU___AGCA__UCGU____UCAU_CAG_G_G_GAUUUCU\n______________|||_||_|:||:___||||__||||____|||:_|||_|_|_||||||:\n______________UUC_GA_GUGUG___UCGU__AGCA____AGUG_GUC_C_C_CUAAAGG\n3'-UUU...CCCGU___U__U____________UA____ACAA____A_______________UACGA...GCA-5'\n_____________|_________________________________________________|\n_____________78________________________________________________34\n |
77 -- 83 |
35 -- 41 |
-27.7125 kcal/mol |
9.35112 kcal/mol |
4.80542 kcal/mol |
38 84@LB@ | |@LB@5'-AGU...ACCUU U C CUU CA C A C U GCCGA...CUG-3'@LB@ AAG CU CGCAU AGCA UCGU UCAU CAG G G GAUUUCU@LB@ ||| || |:||: |||| |||| |||: ||| | | ||||||:@LB@ UUC GA GUGUG UCGU AGCA AGUG GUC C C CUAAAGG@LB@3'-UUU...CCCGU U U UA ACAA A UACGA...GCA-5'@LB@ | |@LB@ 78 34@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -27.7125 kcal/mol@LB@Unfolding Energy - mRNA 9.35112 kcal/mol@LB@Unfolding Energy - sRNA 4.80542 kcal/mol@LB@@LB@Position - mRNA 39 -- 83@LB@Position - sRNA 35 -- 77@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 35 -- 41@LB@ |
