187 |
0.01374 |
0.2529 |
b1344 |
ttcA |
-15.51 |
0.020761 |
46 -- 73 |
1 -- 29 |
tRNA s(2)C32 thioltransferase iron sulfur cluster protein |
|
_____________45_____________________________74\n_____________|______________________________|\n5'-GCU...CAGCC____________G___CUGC_____A____GUAUG...UCA-3'\n______________AAAUGGGG_CAU_AAA_____GCAG_UGGU\n______________||||||||_|||_|||_____||||_|||:\n______________UUUACCCC_GUA_UUU_____CGUC_ACCG\n3'-UUU...GGUGU________U___G___CUUUU_________-5'\n_____________|_____________________________|\n_____________30____________________________1\n |
47 -- 53 |
22 -- 28 |
-26.0543 kcal/mol |
8.02666 kcal/mol |
2.51907 kcal/mol |
45 74@LB@ | |@LB@5'-GCU...CAGCC G CUGC A GUAUG...UCA-3'@LB@ AAAUGGGG CAU AAA GCAG UGGU@LB@ |||||||| ||| ||| |||| |||:@LB@ UUUACCCC GUA UUU CGUC ACCG@LB@3'-UUU...GGUGU U G CUUUU -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.51 kcal/mol@LB@Hybridization Energy -26.0543 kcal/mol@LB@Unfolding Energy - mRNA 8.02666 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 46 -- 73@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 22 -- 28@LB@ |
119 |
0.008338 |
0.2459 |
b0123 |
cueO |
-14.31 |
0.040489 |
47 -- 61 |
9 -- 24 |
multicopper oxidase (laccase) |
|
_____________46_______________62\n_____________|________________|\n5'-CUG...UACCA________________UAAAC...CGU-3'\n______________GGGGC_UUAAAGAAGA\n______________|||:|_|:||||||:|\n______________CCCUG_AGUUUCUUUU\n3'-UUU...UUUAC_____U__________CGUCACCG-5'\n_____________|________________|\n_____________25_______________8\n |
55 -- 61 |
9 -- 15 |
-17.0719 kcal/mol |
2.10565 kcal/mol |
0.659805 kcal/mol |
46 62@LB@ | |@LB@5'-CUG...UACCA UAAAC...CGU-3'@LB@ GGGGC UUAAAGAAGA@LB@ |||:| |:||||||:|@LB@ CCCUG AGUUUCUUUU@LB@3'-UUU...UUUAC U CGUCACCG-5'@LB@ | |@LB@ 25 8@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -17.0719 kcal/mol@LB@Unfolding Energy - mRNA 2.10565 kcal/mol@LB@Unfolding Energy - sRNA 0.659805 kcal/mol@LB@@LB@Position - mRNA 47 -- 61@LB@Position - sRNA 9 -- 24@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 9 -- 15@LB@ |
140 |
0.01029 |
0.2504 |
b3247 |
rng |
-10.20 |
0.255190 |
49 -- 63 |
1 -- 14 |
ribonuclease G |
|
_____________48______________64\n_____________|_______________|\n5'-GUU...CCGUU___U_______GU__AUACG...CGC-3'\n______________AGA_AAAGCAG__GC\n______________|||_|||||||__||\n______________UCU_UUUCGUC__CG\n3'-UUU...UAGUU___________AC__-5'\n_____________|______________|\n_____________15_____________1\n |
53 -- 59 |
5 -- 11 |
-13.7724 kcal/mol |
2.22711 kcal/mol |
1.34059 kcal/mol |
48 64@LB@ | |@LB@5'-GUU...CCGUU U GU AUACG...CGC-3'@LB@ AGA AAAGCAG GC@LB@ ||| ||||||| ||@LB@ UCU UUUCGUC CG@LB@3'-UUU...UAGUU AC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -13.7724 kcal/mol@LB@Unfolding Energy - mRNA 2.22711 kcal/mol@LB@Unfolding Energy - sRNA 1.34059 kcal/mol@LB@@LB@Position - mRNA 49 -- 63@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
97 |
0.005972 |
0.2161 |
b0768 |
ybhD |
-15.34 |
0.022873 |
51 -- 78 |
6 -- 32 |
putative DNA-binding transcriptional regulator |
b2409 |
_____________50___________________________79\n_____________|____________________________|\n5'-CAG...UUAUU____U____UU__________C______UCUCU...CAU-3'\n______________GCGA_AUGG__ACAUUAAGGG_AAAGCA\n______________:|:|_||||__||||:||:|:_||||||\n______________UGUU_UACC__UGUAGUUUCU_UUUCGU\n3'-UUU...CGAGG____U____CC_________________CACCG-5'\n_____________|____________________________|\n_____________33___________________________5\n |
64 -- 70 |
13 -- 19 |
-24.2506 kcal/mol |
6.37495 kcal/mol |
2.53457 kcal/mol |
50 79@LB@ | |@LB@5'-CAG...UUAUU U UU C UCUCU...CAU-3'@LB@ GCGA AUGG ACAUUAAGGG AAAGCA@LB@ :|:| |||| ||||:||:|: ||||||@LB@ UGUU UACC UGUAGUUUCU UUUCGU@LB@3'-UUU...CGAGG U CC CACCG-5'@LB@ | |@LB@ 33 5@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -24.2506 kcal/mol@LB@Unfolding Energy - mRNA 6.37495 kcal/mol@LB@Unfolding Energy - sRNA 2.53457 kcal/mol@LB@@LB@Position - mRNA 51 -- 78@LB@Position - sRNA 6 -- 32@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 13 -- 19@LB@ |
79 |
0.004643 |
0.2062 |
b2264 |
menD |
-12.62 |
0.093644 |
52 -- 86 |
1 -- 30 |
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase |
|
_____________51_____________________________________87\n_____________|______________________________________|\n5'-CGU...GAGCA_______CAGGAAAUC____A_____C___________UGCGU...GUU-3'\n______________AGAGUGG_________GACA_CAAAG___GGCAG_GGC\n______________|:|:|||_________||||_|||||___:||||_|||\n______________UUUUACC_________CUGU_GUUUC___UCGUC_CCG\n3'-UUU...AGGUG_______C____________A_____UUU_____A___-5'\n_____________|_____________________________________|\n_____________31____________________________________1\n |
52 -- 58 |
24 -- 30 |
-24.8101 kcal/mol |
9.6737 kcal/mol |
2.51911 kcal/mol |
51 87@LB@ | |@LB@5'-CGU...GAGCA CAGGAAAUC A C UGCGU...GUU-3'@LB@ AGAGUGG GACA CAAAG GGCAG GGC@LB@ |:|:||| |||| ||||| :|||| |||@LB@ UUUUACC CUGU GUUUC UCGUC CCG@LB@3'-UUU...AGGUG C A UUU A -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -24.8101 kcal/mol@LB@Unfolding Energy - mRNA 9.6737 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 52 -- 86@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 24 -- 30@LB@ |
127 |
0.009277 |
0.2491 |
b2781 |
mazG |
-12.70 |
0.090074 |
53 -- 69 |
8 -- 24 |
nucleoside triphosphate pyrophosphohydrolase |
|
_____________52________________70\n_____________|_________________|\n5'-UGA...CAAGA__A___A__________AACAG...CGC-3'\n______________GG_GCA_CGAAGAAAGG\n______________||_:||_|:||||||:|\n______________CC_UGU_GUUUCUUUUC\n3'-UUU...UUUAC__C___A__________GUCACCG-5'\n_____________|_________________|\n_____________25________________7\n |
63 -- 69 |
8 -- 14 |
-16.258 kcal/mol |
2.86814 kcal/mol |
0.688982 kcal/mol |
52 70@LB@ | |@LB@5'-UGA...CAAGA A A AACAG...CGC-3'@LB@ GG GCA CGAAGAAAGG@LB@ || :|| |:||||||:|@LB@ CC UGU GUUUCUUUUC@LB@3'-UUU...UUUAC C A GUCACCG-5'@LB@ | |@LB@ 25 7@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -16.258 kcal/mol@LB@Unfolding Energy - mRNA 2.86814 kcal/mol@LB@Unfolding Energy - sRNA 0.688982 kcal/mol@LB@@LB@Position - mRNA 53 -- 69@LB@Position - sRNA 8 -- 24@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 8 -- 14@LB@ |
141 |
0.01037 |
0.2504 |
b2161 |
nupX |
-15.31 |
0.023296 |
54 -- 80 |
1 -- 26 |
nucleoside permease |
b2164 |
_____________53____________________________81\n_____________|_____________________________|\n5'-UUG...GGUUC_______UA_________U_______C__GGCUA...GCG-3'\n______________UGGGGAU__GUCGAAGAG__GC_GUG_GC\n______________||||||:__:||:||||:__||_|||_||\n______________ACCCCUG__UAGUUUCUU__CG_CAC_CG\n3'-UUU...GUUUU__________________UU__U______-5'\n_____________|____________________________|\n_____________27___________________________1\n |
65 -- 71 |
11 -- 17 |
-27.7009 kcal/mol |
9.87339 kcal/mol |
2.51842 kcal/mol |
53 81@LB@ | |@LB@5'-UUG...GGUUC UA U C GGCUA...GCG-3'@LB@ UGGGGAU GUCGAAGAG GC GUG GC@LB@ ||||||: :||:||||: || ||| ||@LB@ ACCCCUG UAGUUUCUU CG CAC CG@LB@3'-UUU...GUUUU UU U -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -27.7009 kcal/mol@LB@Unfolding Energy - mRNA 9.87339 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 11 -- 17@LB@ |
47 |
0.002271 |
0.1648 |
b3169 |
nusA |
-13.61 |
0.058009 |
55 -- 79 |
4 -- 28 |
transcription termination/antitermination L factor |
|
_____________54__________________________80\n_____________|___________________________|\n5'-UUG...UCGUA_____CA________UC__________AGACG...CAG-3'\n______________AAUGG__GGGCGUUA____AAAGCGGU\n______________|||||__||:|:|:|____|||||:||\n______________UUACC__CCUGUAGU____UUUCGUCA\n3'-UUU...GUGUU_______________UUCU________CCG-5'\n_____________|___________________________|\n_____________29__________________________3\n |
73 -- 79 |
4 -- 10 |
-21.8237 kcal/mol |
5.69952 kcal/mol |
2.51457 kcal/mol |
54 80@LB@ | |@LB@5'-UUG...UCGUA CA UC AGACG...CAG-3'@LB@ AAUGG GGGCGUUA AAAGCGGU@LB@ ||||| ||:|:|:| |||||:||@LB@ UUACC CCUGUAGU UUUCGUCA@LB@3'-UUU...GUGUU UUCU CCG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -21.8237 kcal/mol@LB@Unfolding Energy - mRNA 5.69952 kcal/mol@LB@Unfolding Energy - sRNA 2.51457 kcal/mol@LB@@LB@Position - mRNA 55 -- 79@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 4 -- 10@LB@ |
83 |
0.005101 |
0.2147 |
b2610 |
ffh |
-14.32 |
0.040245 |
57 -- 74 |
4 -- 21 |
Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
|
_____________56_________________75\n_____________|__________________|\n5'-AGG...GAGCA___AG_____________AUAGC...AAG-3'\n______________AUA__AAAGAGAAGCAGU\n______________|:|__|||||:|||||||\n______________UGU__UUUCUUUUCGUCA\n3'-UUU...ACCCC___AG_____________CCG-5'\n_____________|__________________|\n_____________22_________________3\n |
68 -- 74 |
4 -- 10 |
-18.2522 kcal/mol |
2.42435 kcal/mol |
1.51 kcal/mol |
56 75@LB@ | |@LB@5'-AGG...GAGCA AG AUAGC...AAG-3'@LB@ AUA AAAGAGAAGCAGU@LB@ |:| |||||:|||||||@LB@ UGU UUUCUUUUCGUCA@LB@3'-UUU...ACCCC AG CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -18.2522 kcal/mol@LB@Unfolding Energy - mRNA 2.42435 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 57 -- 74@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 4 -- 10@LB@ |
200 |
0.01506 |
0.259 |
b0404 |
acpH |
-14.03 |
0.046767 |
57 -- 80 |
6 -- 28 |
acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase |
|
_____________56________________________81\n_____________|_________________________|\n5'-GCC...GGGAU______CA_________UUC_____AUUCA...GUU-3'\n______________AGUGGG___AUCAGGGA___GGGCA\n______________|:||||___||||::||___::|||\n______________UUACCC___UAGUUUCU___UUCGU\n3'-UUU...GUGUU______CUG________U_______CACCG-5'\n_____________|_________________________|\n_____________29________________________5\n |
66 -- 72 |
12 -- 18 |
-19.5231 kcal/mol |
4.78501 kcal/mol |
0.706454 kcal/mol |
56 81@LB@ | |@LB@5'-GCC...GGGAU CA UUC AUUCA...GUU-3'@LB@ AGUGGG AUCAGGGA GGGCA@LB@ |:|||| ||||::|| ::|||@LB@ UUACCC UAGUUUCU UUCGU@LB@3'-UUU...GUGUU CUG U CACCG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -19.5231 kcal/mol@LB@Unfolding Energy - mRNA 4.78501 kcal/mol@LB@Unfolding Energy - sRNA 0.706454 kcal/mol@LB@@LB@Position - mRNA 57 -- 80@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 12 -- 18@LB@ |