| 78 |
0.004634 |
0.2062 |
b1601 |
tqsA |
-18.27 |
0.003423 |
191 -- 205 |
1 -- 25 |
pheromone AI-2 transporter |
|
_____________190_______________________206\n_____________|_________________________|\n5'-AUU...AAAAC_________________________AAAGC...UCA-3'\n______________GGGGACA_________AGCA_UGGC\n______________|||||||_________||||_||||\n______________CCCCUGU_________UCGU_ACCG\n3'-UUU...UUUUA_______AGUUUCUUU____C____-5'\n_____________|________________________|\n_____________26_______________________1\n |
191 -- 197 |
19 -- 25 |
-23.2822 kcal/mol |
2.49324 kcal/mol |
2.51748 kcal/mol |
190 206@LB@ | |@LB@5'-AUU...AAAAC AAAGC...UCA-3'@LB@ GGGGACA AGCA UGGC@LB@ ||||||| |||| ||||@LB@ CCCCUGU UCGU ACCG@LB@3'-UUU...UUUUA AGUUUCUUU C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -18.27 kcal/mol@LB@Hybridization Energy -23.2822 kcal/mol@LB@Unfolding Energy - mRNA 2.49324 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 191 -- 205@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 90 |
0.005632 |
0.2147 |
b1234 |
rssA |
-9.83 |
0.291555 |
191 -- 222 |
1 -- 26 |
putative patatin-like family phospholipase |
|
_____________190_______________________________223\n_____________|_________________________________|\n5'-GAU...AAUCU__C____AUAAU_______AUAAAAA_______UGGCG...AAA-3'\n______________UG_GGGA_____GAGAAAG_______UAG_GGC\n______________||_||||_____:|||||:_______:||_|||\n______________AC_CCCU_____UUCUUUU_______GUC_CCG\n3'-UUU...GUUUU_______GUAGU_______C_________A___-5'\n_____________|________________________________|\n_____________27_______________________________1\n |
203 -- 209 |
9 -- 15 |
-16.1024 kcal/mol |
3.75149 kcal/mol |
2.51842 kcal/mol |
190 223@LB@ | |@LB@5'-GAU...AAUCU C AUAAU AUAAAAA UGGCG...AAA-3'@LB@ UG GGGA GAGAAAG UAG GGC@LB@ || |||| :|||||: :|| |||@LB@ AC CCCU UUCUUUU GUC CCG@LB@3'-UUU...GUUUU GUAGU C A -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -16.1024 kcal/mol@LB@Unfolding Energy - mRNA 3.75149 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 191 -- 222@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 107 |
0.007146 |
0.2343 |
b0085 |
murE |
-14.50 |
0.036427 |
193 -- 205 |
1 -- 25 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase |
|
_____________192_______________________206\n_____________|_________________________|\n5'-UGC...GGCGA_________________________AGAUC...CGG-3'\n______________GGGGACA____________GGUGGC\n______________|||||||____________:|||||\n______________CCCCUGU____________UCACCG\n3'-UUU...UUUUA_______AGUUUCUUUUCG______-5'\n_____________|________________________|\n_____________26_______________________1\n |
193 -- 199 |
19 -- 25 |
-21.3886 kcal/mol |
4.36682 kcal/mol |
2.51748 kcal/mol |
192 206@LB@ | |@LB@5'-UGC...GGCGA AGAUC...CGG-3'@LB@ GGGGACA GGUGGC@LB@ ||||||| :|||||@LB@ CCCCUGU UCACCG@LB@3'-UUU...UUUUA AGUUUCUUUUCG -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -21.3886 kcal/mol@LB@Unfolding Energy - mRNA 4.36682 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 22 |
0.0008145 |
0.1243 |
b3574 |
yiaJ |
-21.10 |
0.000313 |
196 -- 241 |
1 -- 32 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________195____________________________________________242\n_____________|______________________________________________|\n5'-CCC...ACGCG____________A_GAAGUGAUGGGAAAA________CG__A____GCAGG...UUG-3'\n______________ACAAAAUGGGGA_A_______________AAAGAGAA__AG_UGGC\n______________||||||||||||_|_______________|||||:||__||_||||\n______________UGUUUUACCCCU_U_______________UUUCUUUU__UC_ACCG\n3'-UUU...CGAGG____________G_AG_____________________CG_______-5'\n_____________|_____________________________________________|\n_____________33____________________________________________1\n |
226 -- 232 |
9 -- 15 |
-30.0936 kcal/mol |
6.45407 kcal/mol |
2.53929 kcal/mol |
195 242@LB@ | |@LB@5'-CCC...ACGCG A GAAGUGAUGGGAAAA CG A GCAGG...UUG-3'@LB@ ACAAAAUGGGGA A AAAGAGAA AG UGGC@LB@ |||||||||||| | |||||:|| || ||||@LB@ UGUUUUACCCCU U UUUCUUUU UC ACCG@LB@3'-UUU...CGAGG G AG CG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -21.10 kcal/mol@LB@Hybridization Energy -30.0936 kcal/mol@LB@Unfolding Energy - mRNA 6.45407 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 241@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 56 |
0.002838 |
0.1778 |
b3371 |
frlB |
-17.11 |
0.007704 |
196 -- 228 |
2 -- 32 |
fructoselysine-6-P-deglycase |
|
_____________195________________________________229\n_____________|__________________________________|\n5'-ACU...AGAAA________UU_________U________CC____ACUUU...ACG-3'\n______________AUAAAAUG__GGAUAUUGA__AAAAGCA__GUGG\n______________|:||||||__|||:||::|__|||||||__||||\n______________UGUUUUAC__CCUGUAGUU__UUUUCGU__CACC\n3'-UUU...CGAGG________C__________UC_____________G-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
216 -- 222 |
6 -- 12 |
-25.2618 kcal/mol |
5.61622 kcal/mol |
2.53929 kcal/mol |
195 229@LB@ | |@LB@5'-ACU...AGAAA UU U CC ACUUU...ACG-3'@LB@ AUAAAAUG GGAUAUUGA AAAAGCA GUGG@LB@ |:|||||| |||:||::| ||||||| ||||@LB@ UGUUUUAC CCUGUAGUU UUUUCGU CACC@LB@3'-UUU...CGAGG C UC G-5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -25.2618 kcal/mol@LB@Unfolding Energy - mRNA 5.61622 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 228@LB@Position - sRNA 2 -- 32@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 186 |
0.01333 |
0.2514 |
b0084 |
ftsI |
-11.80 |
0.135121 |
196 -- 214 |
1 -- 22 |
transpeptidase involved in septal peptidoglycan synthesis; penicillin-binding protein 3 |
|
_____________195____________________215\n_____________|______________________|\n5'-GUU...AACGC_______U__________C___GAAAA...UGG-3'\n______________GACG_CA___GAAAGCAG_GGC\n______________|||:_||___:|||||||_|||\n______________CUGU_GU___UUUUCGUC_CCG\n3'-UUU...UACCC____A__UUC________A___-5'\n_____________|_____________________|\n_____________23____________________1\n |
204 -- 210 |
5 -- 11 |
-21.3841 kcal/mol |
8.04628 kcal/mol |
1.54023 kcal/mol |
195 215@LB@ | |@LB@5'-GUU...AACGC U C GAAAA...UGG-3'@LB@ GACG CA GAAAGCAG GGC@LB@ |||: || :||||||| |||@LB@ CUGU GU UUUUCGUC CCG@LB@3'-UUU...UACCC A UUC A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -21.3841 kcal/mol@LB@Unfolding Energy - mRNA 8.04628 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 196 -- 214@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 24 |
0.0009771 |
0.1361 |
b4295 |
yjhU |
-16.20 |
0.013710 |
198 -- 226 |
5 -- 30 |
putative DNA-binding transcriptional regulator; KpLE2 phage-like element |
b1512 |
_____________197___________________________227\n_____________|_____________________________|\n5'-GUA...AUACA_______AUA__G______C___C_____CCUGU...UUG-3'\n______________AAAGUGG___GA_AUCAAA_AAA_AGCAG\n______________|||:|||___||_||||||_|||_|||||\n______________UUUUACC___CU_UAGUUU_UUU_UCGUC\n3'-UUU...AGGUG_______C____G______C_________ACCG-5'\n_____________|_____________________________|\n_____________31____________________________4\n |
198 -- 204 |
24 -- 30 |
-21.4023 kcal/mol |
2.69702 kcal/mol |
2.50278 kcal/mol |
197 227@LB@ | |@LB@5'-GUA...AUACA AUA G C C CCUGU...UUG-3'@LB@ AAAGUGG GA AUCAAA AAA AGCAG@LB@ |||:||| || |||||| ||| |||||@LB@ UUUUACC CU UAGUUU UUU UCGUC@LB@3'-UUU...AGGUG C G C ACCG-5'@LB@ | |@LB@ 31 4@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -21.4023 kcal/mol@LB@Unfolding Energy - mRNA 2.69702 kcal/mol@LB@Unfolding Energy - sRNA 2.50278 kcal/mol@LB@@LB@Position - mRNA 198 -- 226@LB@Position - sRNA 5 -- 30@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 137 |
0.0102 |
0.2504 |
b0957 |
ompA |
-10.25 |
0.250752 |
198 -- 232 |
1 -- 30 |
outer membrane protein A (3a;II*;G;d) |
|
_____________197_________________________________233\n_____________|___________________________________|\n5'-CUU...CGCAA______AAAAA____GCUAUCGC__UU________ACUGG...AAC-3'\n______________AAAAUG_____GACA________GA__GCAGUGGC\n______________||||||_____||||________:|__||||||||\n______________UUUUAC_____CUGU________UU__CGUCACCG\n3'-UUU...AGGUG______CC_______AGUUUC____UU________-5'\n_____________|__________________________________|\n_____________31_________________________________1\n |
226 -- 232 |
1 -- 7 |
-21.624 kcal/mol |
8.85247 kcal/mol |
2.51911 kcal/mol |
197 233@LB@ | |@LB@5'-CUU...CGCAA AAAAA GCUAUCGC UU ACUGG...AAC-3'@LB@ AAAAUG GACA GA GCAGUGGC@LB@ |||||| |||| :| ||||||||@LB@ UUUUAC CUGU UU CGUCACCG@LB@3'-UUU...AGGUG CC AGUUUC UU -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.624 kcal/mol@LB@Unfolding Energy - mRNA 8.85247 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 232@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 157 |
0.0114 |
0.2504 |
b3833 |
ubiE |
-14.57 |
0.035245 |
198 -- 236 |
1 -- 30 |
bifunctional 2-octaprenyl-6-methoxy-1 4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase |
|
_____________197_____________________________________237\n_____________|_______________________________________|\n5'-ACA...GCAUU_______U____AA____C______CGAC___CUU____UUUCA...CAU-3'\n______________GAGAUGG_GGAU__GUCA_AAGAAA____GCA___UGGU\n______________:|:||||_|||:__:|||_||||||____|||___|||:\n______________UUUUACC_CCUG__UAGU_UUCUUU____CGU___ACCG\n3'-UUU...AGGUG_________________________U______C______-5'\n_____________|______________________________________|\n_____________31_____________________________________1\n |
198 -- 204 |
24 -- 30 |
-23.6374 kcal/mol |
6.55293 kcal/mol |
2.51911 kcal/mol |
197 237@LB@ | |@LB@5'-ACA...GCAUU U AA C CGAC CUU UUUCA...CAU-3'@LB@ GAGAUGG GGAU GUCA AAGAAA GCA UGGU@LB@ :|:|||| |||: :||| |||||| ||| |||:@LB@ UUUUACC CCUG UAGU UUCUUU CGU ACCG@LB@3'-UUU...AGGUG U C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -23.6374 kcal/mol@LB@Unfolding Energy - mRNA 6.55293 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 236@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 40 |
0.001973 |
0.1648 |
b1823 |
cspC |
-10.89 |
0.196769 |
199 -- 231 |
1 -- 29 |
stress protein member of the CspA-family |
|
_____________198_______________________________232\n_____________|_________________________________|\n5'-UAU...UUUUC______CAA_G________UC____UA______UCAAC...UCU-3'\n______________AAAUGG___A_AUUAAAGG__AGGU__AGUGGU\n______________||||||___|_||:||||:__|:|:__|||||:\n______________UUUACC___U_UAGUUUCU__UUCG__UCACCG\n3'-UUU...GGUGU______CC__G________U_____________-5'\n_____________|________________________________|\n_____________30_______________________________1\n |
210 -- 216 |
13 -- 19 |
-20.1954 kcal/mol |
6.78842 kcal/mol |
2.51907 kcal/mol |
198 232@LB@ | |@LB@5'-UAU...UUUUC CAA G UC UA UCAAC...UCU-3'@LB@ AAAUGG A AUUAAAGG AGGU AGUGGU@LB@ |||||| | ||:||||: |:|: |||||:@LB@ UUUACC U UAGUUUCU UUCG UCACCG@LB@3'-UUU...GGUGU CC G U -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -10.89 kcal/mol@LB@Hybridization Energy -20.1954 kcal/mol@LB@Unfolding Energy - mRNA 6.78842 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 199 -- 231@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 13 -- 19@LB@ |
