108 |
0.007234 |
0.2348 |
b1725 |
yniA |
-14.77 |
0.031588 |
182 -- 211 |
1 -- 32 |
fructosamine kinase family protein |
|
_____________181_________________________________212\n_____________|___________________________________|\n5'-GAG...GGCAG____C_____AGA_______UGU____________AAUCA...GGC-3'\n______________ACAA_AUGGG___GACAUCA______GGCA__GGC\n______________||||_|||||___|||||||______:|||__|||\n______________UGUU_UACCC___CUGUAGU______UCGU__CCG\n3'-UUU...CGAGG____U_______________UUCUUU____CA___-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
195 -- 201 |
16 -- 22 |
-26.2676 kcal/mol |
8.96188 kcal/mol |
2.53929 kcal/mol |
181 212@LB@ | |@LB@5'-GAG...GGCAG C AGA UGU AAUCA...GGC-3'@LB@ ACAA AUGGG GACAUCA GGCA GGC@LB@ |||| ||||| ||||||| :||| |||@LB@ UGUU UACCC CUGUAGU UCGU CCG@LB@3'-UUU...CGAGG U UUCUUU CA -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.77 kcal/mol@LB@Hybridization Energy -26.2676 kcal/mol@LB@Unfolding Energy - mRNA 8.96188 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 182 -- 211@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 16 -- 22@LB@ |
162 |
0.012 |
0.2504 |
b2079 |
baeR |
-15.58 |
0.019969 |
182 -- 201 |
6 -- 24 |
response regulator in two-component regulatory system with BaeS |
|
_____________181__________________202\n_____________|____________________|\n5'-CAG...GGAAC_____UUA____________UGACC...CGA-3'\n______________GGGAU___CAGAGAGAAGUA\n______________||||:___||:|||:|||:|\n______________CCCUG___GUUUCUUUUCGU\n3'-UUU...UUUAC_____UA_____________CACCG-5'\n_____________|____________________|\n_____________25___________________5\n |
195 -- 201 |
6 -- 12 |
-20.602 kcal/mol |
4.32458 kcal/mol |
0.702143 kcal/mol |
181 202@LB@ | |@LB@5'-CAG...GGAAC UUA UGACC...CGA-3'@LB@ GGGAU CAGAGAGAAGUA@LB@ ||||: ||:|||:|||:|@LB@ CCCUG GUUUCUUUUCGU@LB@3'-UUU...UUUAC UA CACCG-5'@LB@ | |@LB@ 25 5@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -20.602 kcal/mol@LB@Unfolding Energy - mRNA 4.32458 kcal/mol@LB@Unfolding Energy - sRNA 0.702143 kcal/mol@LB@@LB@Position - mRNA 182 -- 201@LB@Position - sRNA 6 -- 24@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 6 -- 12@LB@ |
25 |
0.0009834 |
0.1361 |
b3733 |
atpG |
-13.27 |
0.068654 |
183 -- 205 |
1 -- 22 |
F1 sector of membrane-bound ATP synthase gamma subunit |
|
_____________182_____________________206\n_____________|_______________________|\n5'-GGC...CGCAA________________UCA____CGGCG...GUA-3'\n______________GGCAUUGAGGAGAAGC___UGGC\n______________|:|||::|:||:||||___||||\n______________CUGUAGUUUCUUUUCG___ACCG\n3'-UUU...UACCC________________UC_____-5'\n_____________|______________________|\n_____________23_____________________1\n |
192 -- 198 |
7 -- 13 |
-25.5897 kcal/mol |
10.7799 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-GGC...CGCAA UCA CGGCG...GUA-3'@LB@ GGCAUUGAGGAGAAGC UGGC@LB@ |:|||::|:||:|||| ||||@LB@ CUGUAGUUUCUUUUCG ACCG@LB@3'-UUU...UACCC UC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -25.5897 kcal/mol@LB@Unfolding Energy - mRNA 10.7799 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
48 |
0.002302 |
0.1648 |
b3460 |
livJ |
-15.11 |
0.026091 |
183 -- 229 |
1 -- 30 |
branched-chain amino acid ABC transporter periplasmic binding protein |
|
_____________182_____________________________________________230\n_____________|_______________________________________________|\n5'-AAU...CCAGA___________UC___GGAUGAACAUAA____U______UUAC____AGGAU...CAA-3'\n______________AGAAUGGGGAU__UCA____________AGGG_AAAGCG____UGGC\n______________|:||||||||:__|||____________|:|:_|||||:____||||\n______________UUUUACCCCUG__AGU____________UUCU_UUUCGU____ACCG\n3'-UUU...AGGUG___________U___________________________C_______-5'\n_____________|______________________________________________|\n_____________31_____________________________________________1\n |
187 -- 193 |
20 -- 26 |
-27.0033 kcal/mol |
9.37443 kcal/mol |
2.51911 kcal/mol |
182 230@LB@ | |@LB@5'-AAU...CCAGA UC GGAUGAACAUAA U UUAC AGGAU...CAA-3'@LB@ AGAAUGGGGAU UCA AGGG AAAGCG UGGC@LB@ |:||||||||: ||| |:|: |||||: ||||@LB@ UUUUACCCCUG AGU UUCU UUUCGU ACCG@LB@3'-UUU...AGGUG U C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -27.0033 kcal/mol@LB@Unfolding Energy - mRNA 9.37443 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 183 -- 229@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 20 -- 26@LB@ |
61 |
0.00311 |
0.1789 |
b0224 |
yafK |
-14.83 |
0.030578 |
183 -- 204 |
1 -- 20 |
L D-transpeptidase-related protein |
|
_____________182____________________205\n_____________|______________________|\n5'-UUA...CGUUU__________U_______AU__GUAAA...AAG-3'\n______________UAUCAAGGAA_AAGCAGU__GC\n______________:|||||:|||_|||||||__||\n______________GUAGUUUCUU_UUCGUCA__CG\n3'-UUU...CCCCU__________________C___-5'\n_____________|_____________________|\n_____________21____________________1\n |
194 -- 200 |
4 -- 10 |
-21.3079 kcal/mol |
5.02402 kcal/mol |
1.45855 kcal/mol |
182 205@LB@ | |@LB@5'-UUA...CGUUU U AU GUAAA...AAG-3'@LB@ UAUCAAGGAA AAGCAGU GC@LB@ :|||||:||| ||||||| ||@LB@ GUAGUUUCUU UUCGUCA CG@LB@3'-UUU...CCCCU C -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -21.3079 kcal/mol@LB@Unfolding Energy - mRNA 5.02402 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 183 -- 204@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 4 -- 10@LB@ |
92 |
0.005693 |
0.2147 |
b2099 |
yegU |
-12.49 |
0.099484 |
183 -- 197 |
7 -- 22 |
ADP-ribosylglycohydrolase family protein |
|
_____________182______________198\n_____________|________________|\n5'-GUG...GCGUU________________UAAAU...CAC-3'\n______________GACA_CAAGGGGAAGU\n______________||||_|||:|::|||:\n______________CUGU_GUUUCUUUUCG\n3'-UUU...UACCC____A___________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
191 -- 197 |
7 -- 13 |
-15.6094 kcal/mol |
2.53245 kcal/mol |
0.590875 kcal/mol |
182 198@LB@ | |@LB@5'-GUG...GCGUU UAAAU...CAC-3'@LB@ GACA CAAGGGGAAGU@LB@ |||| |||:|::|||:@LB@ CUGU GUUUCUUUUCG@LB@3'-UUU...UACCC A UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -15.6094 kcal/mol@LB@Unfolding Energy - mRNA 2.53245 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
170 |
0.01232 |
0.2504 |
b2580 |
ung |
-11.45 |
0.156876 |
183 -- 205 |
1 -- 22 |
uracil-DNA-glycosylase |
|
_____________182______________________206\n_____________|________________________|\n5'-UCU...UUGAA_______C________G__A____UAACG...CCG-3'\n______________GAU_UCG_AGGAGAGC_AG_UGGC\n______________||:_||:_||:|:|||_||_||||\n______________CUG_AGU_UCUUUUCG_UC_ACCG\n3'-UUU...UACCC___U___U________________-5'\n_____________|_______________________|\n_____________23______________________1\n |
191 -- 197 |
7 -- 13 |
-20.4372 kcal/mol |
7.45123 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-UCU...UUGAA C G A UAACG...CCG-3'@LB@ GAU UCG AGGAGAGC AG UGGC@LB@ ||: ||: ||:|:||| || ||||@LB@ CUG AGU UCUUUUCG UC ACCG@LB@3'-UUU...UACCC U U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -20.4372 kcal/mol@LB@Unfolding Energy - mRNA 7.45123 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
181 |
0.01309 |
0.2504 |
b2799 |
fucO |
-15.36 |
0.022654 |
183 -- 205 |
1 -- 21 |
L-1 2-propanediol oxidoreductase |
|
_____________182_____________________206\n_____________|_______________________|\n5'-CUU...GUAAA___A__________G_U_A____UAACA...CGC-3'\n______________GCA_CAAGGAGAAG_A_G_UGGC\n______________:||_|||:||:|||_|_|_||||\n______________UGU_GUUUCUUUUC_U_C_ACCG\n3'-UUU...ACCCC___A__________G________-5'\n_____________|______________________|\n_____________22_____________________1\n |
190 -- 196 |
8 -- 14 |
-20.3858 kcal/mol |
3.51699 kcal/mol |
1.51103 kcal/mol |
182 206@LB@ | |@LB@5'-CUU...GUAAA A G U A UAACA...CGC-3'@LB@ GCA CAAGGAGAAG A G UGGC@LB@ :|| |||:||:||| | | ||||@LB@ UGU GUUUCUUUUC U C ACCG@LB@3'-UUU...ACCCC A G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -20.3858 kcal/mol@LB@Unfolding Energy - mRNA 3.51699 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 8 -- 14@LB@ |
192 |
0.01406 |
0.2529 |
b4220 |
tamA |
-13.04 |
0.076745 |
183 -- 206 |
1 -- 23 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________182______________________207\n_____________|________________________|\n5'-CGC...AAAAA_______C_______AAU___C__UAUAU...GAC-3'\n______________GGAUAUU_AGGAGAA___GUG_GC\n______________|||:||:_|:||:||___|||_||\n______________CCUGUAG_UUCUUUU___CAC_CG\n3'-UUU...UUACC_______U_______CGU______-5'\n_____________|_______________________|\n_____________24______________________1\n |
191 -- 197 |
9 -- 15 |
-18.7095 kcal/mol |
4.09087 kcal/mol |
1.57928 kcal/mol |
182 207@LB@ | |@LB@5'-CGC...AAAAA C AAU C UAUAU...GAC-3'@LB@ GGAUAUU AGGAGAA GUG GC@LB@ |||:||: |:||:|| ||| ||@LB@ CCUGUAG UUCUUUU CAC CG@LB@3'-UUU...UUACC U CGU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -18.7095 kcal/mol@LB@Unfolding Energy - mRNA 4.09087 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 183 -- 206@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 9 -- 15@LB@ |
13 |
0.0004028 |
0.1087 |
b1107 |
nagZ |
-16.35 |
0.012500 |
184 -- 201 |
3 -- 21 |
beta N-acetyl-glucosaminidase |
|
_____________183_________________202\n_____________|___________________|\n5'-AUU...AUAAA___AU______________UGGGU...CGC-3'\n______________ACA___AAGGAGAGCAGUG\n______________|||___|||:|:|||||||\n______________UGU___UUCUUUUCGUCAC\n3'-UUU...ACCCC___AGU_____________CG-5'\n_____________|___________________|\n_____________22__________________2\n |
195 -- 201 |
3 -- 9 |
-19.0842 kcal/mol |
1.22154 kcal/mol |
1.5107 kcal/mol |
183 202@LB@ | |@LB@5'-AUU...AUAAA AU UGGGU...CGC-3'@LB@ ACA AAGGAGAGCAGUG@LB@ ||| |||:|:|||||||@LB@ UGU UUCUUUUCGUCAC@LB@3'-UUU...ACCCC AGU CG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -16.35 kcal/mol@LB@Hybridization Energy -19.0842 kcal/mol@LB@Unfolding Energy - mRNA 1.22154 kcal/mol@LB@Unfolding Energy - sRNA 1.5107 kcal/mol@LB@@LB@Position - mRNA 184 -- 201@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 3 -- 9@LB@ |