55 |
0.002823 |
0.1778 |
b3319 |
rplD |
-12.54 |
0.096993 |
18 -- 45 |
1 -- 32 |
50S ribosomal subunit protein L4 |
|
_____________17________________________________46\n_____________|_________________________________|\n5'-UCA...UCCGG________U____________C___AAAA____AGGUC...UUG-3'\n______________GCAAAGUG______UCAAAGG_AAG____UGGC\n______________:||||:||______||||||:_|||____||||\n______________UGUUUUAC______AGUUUCU_UUC____ACCG\n3'-UUU...CGAGG________CCCUGU_______U___GUC_____-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
27 -- 33 |
12 -- 18 |
-19.13 kcal/mol |
4.04955 kcal/mol |
2.53929 kcal/mol |
17 46@LB@ | |@LB@5'-UCA...UCCGG U C AAAA AGGUC...UUG-3'@LB@ GCAAAGUG UCAAAGG AAG UGGC@LB@ :||||:|| ||||||: ||| ||||@LB@ UGUUUUAC AGUUUCU UUC ACCG@LB@3'-UUU...CGAGG CCCUGU U GUC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.54 kcal/mol@LB@Hybridization Energy -19.13 kcal/mol@LB@Unfolding Energy - mRNA 4.04955 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 18 -- 45@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 12 -- 18@LB@ |
129 |
0.009293 |
0.2491 |
b0428 |
cyoE |
-12.51 |
0.098557 |
18 -- 26 |
1 -- 9 |
protoheme IX farnesyltransferase |
|
_____________17________27\n_____________|_________|\n5'-GGA...GCAAU_________ACAGG...GCA-3'\n______________GGCAGUGGU\n______________:|||||||:\n______________UCGUCACCG\n3'-UUU...UCUUU_________-5'\n_____________|________|\n_____________10_______1\n |
20 -- 26 |
1 -- 7 |
-15.8954 kcal/mol |
2.13019 kcal/mol |
1.2588 kcal/mol |
17 27@LB@ | |@LB@5'-GGA...GCAAU ACAGG...GCA-3'@LB@ GGCAGUGGU@LB@ :|||||||:@LB@ UCGUCACCG@LB@3'-UUU...UCUUU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -12.51 kcal/mol@LB@Hybridization Energy -15.8954 kcal/mol@LB@Unfolding Energy - mRNA 2.13019 kcal/mol@LB@Unfolding Energy - sRNA 1.2588 kcal/mol@LB@@LB@Position - mRNA 18 -- 26@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 1 -- 7@LB@ |
146 |
0.01079 |
0.2504 |
b2453 |
eutG |
-16.22 |
0.013596 |
18 -- 37 |
1 -- 22 |
ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
|
_____________17_____________________38\n_____________|______________________|\n5'-GGC...CGCCC_____AUU______________AUUAC...GUC-3'\n______________GGCAU____GAAGGGCAG_GGC\n______________|:|||____|||::||||_|||\n______________CUGUA____CUUUUCGUC_CCG\n3'-UUU...UACCC_____GUUU_________A___-5'\n_____________|_____________________|\n_____________23____________________1\n |
28 -- 34 |
5 -- 11 |
-23.1742 kcal/mol |
5.41796 kcal/mol |
1.54023 kcal/mol |
17 38@LB@ | |@LB@5'-GGC...CGCCC AUU AUUAC...GUC-3'@LB@ GGCAU GAAGGGCAG GGC@LB@ |:||| |||::|||| |||@LB@ CUGUA CUUUUCGUC CCG@LB@3'-UUU...UACCC GUUU A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -23.1742 kcal/mol@LB@Unfolding Energy - mRNA 5.41796 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 18 -- 37@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 5 -- 11@LB@ |
166 |
0.01216 |
0.2504 |
b4485 |
ytfR |
-12.60 |
0.094393 |
18 -- 41 |
9 -- 34 |
putative sugar ABC transporter ATPase |
|
_____________17_________________________42\n_____________|__________________________|\n5'-CCU...UGAUA________GAA_______________AGAAA...GCC-3'\n______________CCGCAAAA____GA_AUUAGAGAAGA\n______________||:|||||____||_||:|:||||:|\n______________GGUGUUUU____CU_UAGUUUCUUUU\n3'-UUU...CCCGA________ACCC__G___________CGUCACCG-5'\n_____________|__________________________|\n_____________35_________________________8\n |
35 -- 41 |
9 -- 15 |
-17.8797 kcal/mol |
1.35017 kcal/mol |
3.92941 kcal/mol |
17 42@LB@ | |@LB@5'-CCU...UGAUA GAA AGAAA...GCC-3'@LB@ CCGCAAAA GA AUUAGAGAAGA@LB@ ||:||||| || ||:|:||||:|@LB@ GGUGUUUU CU UAGUUUCUUUU@LB@3'-UUU...CCCGA ACCC G CGUCACCG-5'@LB@ | |@LB@ 35 8@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -17.8797 kcal/mol@LB@Unfolding Energy - mRNA 1.35017 kcal/mol@LB@Unfolding Energy - sRNA 3.92941 kcal/mol@LB@@LB@Position - mRNA 18 -- 41@LB@Position - sRNA 9 -- 34@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
122 |
0.008886 |
0.2491 |
b4366 |
bglJ |
-14.76 |
0.031763 |
19 -- 32 |
15 -- 29 |
bgl operon transcriptional activator |
|
_____________18______________33\n_____________|_______________|\n5'-CUG...GUAAA_______________CCAGA...GUA-3'\n______________GGAUGGGG_CAUCAA\n______________::||||||_||||||\n______________UUUACCCC_GUAGUU\n3'-UUU...GGUGU________U______UCUUU...CCG-5'\n_____________|_______________|\n_____________30______________14\n |
20 -- 26 |
22 -- 28 |
-19.2746 kcal/mol |
3.84044 kcal/mol |
0.677927 kcal/mol |
18 33@LB@ | |@LB@5'-CUG...GUAAA CCAGA...GUA-3'@LB@ GGAUGGGG CAUCAA@LB@ ::|||||| ||||||@LB@ UUUACCCC GUAGUU@LB@3'-UUU...GGUGU U UCUUU...CCG-5'@LB@ | |@LB@ 30 14@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -19.2746 kcal/mol@LB@Unfolding Energy - mRNA 3.84044 kcal/mol@LB@Unfolding Energy - sRNA 0.677927 kcal/mol@LB@@LB@Position - mRNA 19 -- 32@LB@Position - sRNA 15 -- 29@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 22 -- 28@LB@ |
139 |
0.01022 |
0.2504 |
b3163 |
nlpI |
-13.31 |
0.067339 |
19 -- 42 |
4 -- 21 |
lipoprotein involved in osmotic sensitivity and filamentation |
|
_____________18_______________________43\n_____________|________________________|\n5'-AGG...UCUGA___________GCGACU_______CUCAA...CAU-3'\n______________GCAUUAAAGAA______GAGCAGU\n______________:|||:||||||______:||||||\n______________UGUAGUUUCUU______UUCGUCA\n3'-UUU...ACCCC________________________CCG-5'\n_____________|________________________|\n_____________22_______________________3\n |
36 -- 42 |
4 -- 10 |
-18.4935 kcal/mol |
3.67449 kcal/mol |
1.51 kcal/mol |
18 43@LB@ | |@LB@5'-AGG...UCUGA GCGACU CUCAA...CAU-3'@LB@ GCAUUAAAGAA GAGCAGU@LB@ :|||:|||||| :||||||@LB@ UGUAGUUUCUU UUCGUCA@LB@3'-UUU...ACCCC CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -18.4935 kcal/mol@LB@Unfolding Energy - mRNA 3.67449 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 19 -- 42@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 4 -- 10@LB@ |
44 |
0.002166 |
0.1648 |
b3349 |
slyD |
-19.18 |
0.001707 |
20 -- 41 |
5 -- 23 |
FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) |
|
_____________19_____________________42\n_____________|______________________|\n5'-UGU...AGUGC__________UGC_________ACAAA...ACU-3'\n______________GGACAUCAGA___GAGAAGCAG\n______________||||||||:|___||:||||||\n______________CCUGUAGUUU___CUUUUCGUC\n3'-UUU...UUACC______________________ACCG-5'\n_____________|______________________|\n_____________24_____________________4\n |
35 -- 41 |
5 -- 11 |
-25.7728 kcal/mol |
5.01574 kcal/mol |
1.57523 kcal/mol |
19 42@LB@ | |@LB@5'-UGU...AGUGC UGC ACAAA...ACU-3'@LB@ GGACAUCAGA GAGAAGCAG@LB@ ||||||||:| ||:||||||@LB@ CCUGUAGUUU CUUUUCGUC@LB@3'-UUU...UUACC ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -19.18 kcal/mol@LB@Hybridization Energy -25.7728 kcal/mol@LB@Unfolding Energy - mRNA 5.01574 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 20 -- 41@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 5 -- 11@LB@ |
165 |
0.01211 |
0.2504 |
b3642 |
pyrE |
-11.74 |
0.138291 |
22 -- 41 |
7 -- 25 |
orotate phosphoribosyltransferase |
|
_____________21___________________42\n_____________|____________________|\n5'-CGG...GUGCA_______GCA_____C____CGUUC...AUU-3'\n______________GGGGACG___GAAGG_GAGC\n______________||||||:___:|||:_:|||\n______________CCCCUGU___UUUCU_UUCG\n3'-UUU...UUUUA_______AG______U____UCACCG-5'\n_____________|____________________|\n_____________26___________________6\n |
22 -- 28 |
19 -- 25 |
-22.5653 kcal/mol |
10.1153 kcal/mol |
0.70626 kcal/mol |
21 42@LB@ | |@LB@5'-CGG...GUGCA GCA C CGUUC...AUU-3'@LB@ GGGGACG GAAGG GAGC@LB@ ||||||: :|||: :|||@LB@ CCCCUGU UUUCU UUCG@LB@3'-UUU...UUUUA AG U UCACCG-5'@LB@ | |@LB@ 26 6@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -22.5653 kcal/mol@LB@Unfolding Energy - mRNA 10.1153 kcal/mol@LB@Unfolding Energy - sRNA 0.70626 kcal/mol@LB@@LB@Position - mRNA 22 -- 41@LB@Position - sRNA 7 -- 25@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 19 -- 25@LB@ |
196 |
0.01416 |
0.2529 |
b0870 |
ltaE |
-12.27 |
0.109556 |
23 -- 39 |
7 -- 23 |
L-allo-threonine aldolase PLP-dependent |
|
_____________22________________40\n_____________|_________________|\n5'-GUC...GUGGU__U__C___________UAGCC...ACC-3'\n______________GG_CG_CAAAGAAGAGU\n______________||_|:_|||||||:||:\n______________CC_GU_GUUUCUUUUCG\n3'-UUU...UUACC__U__A___________UCACCG-5'\n_____________|_________________|\n_____________24________________6\n |
33 -- 39 |
7 -- 13 |
-15.8177 kcal/mol |
2.94498 kcal/mol |
0.599063 kcal/mol |
22 40@LB@ | |@LB@5'-GUC...GUGGU U C UAGCC...ACC-3'@LB@ GG CG CAAAGAAGAGU@LB@ || |: |||||||:||:@LB@ CC GU GUUUCUUUUCG@LB@3'-UUU...UUACC U A UCACCG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -12.27 kcal/mol@LB@Hybridization Energy -15.8177 kcal/mol@LB@Unfolding Energy - mRNA 2.94498 kcal/mol@LB@Unfolding Energy - sRNA 0.599063 kcal/mol@LB@@LB@Position - mRNA 23 -- 39@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 7 -- 13@LB@ |
37 |
0.001785 |
0.1648 |
b3933 |
ftsN |
-15.64 |
0.019200 |
24 -- 52 |
1 -- 29 |
essential cell division protein |
|
_____________23______________________________53\n_____________|_______________________________|\n5'-AGC...UGAUC_____CA______A__CGUU___________UCUCG...CUC-3'\n______________AAAUG__GGGGCA_CA______GGCAGUGGC\n______________|||||__|||:||_||______:||||||||\n______________UUUAC__CCCUGU_GU______UCGUCACCG\n3'-UUU...GGUGU_____________A__UUCUUU_________-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
46 -- 52 |
1 -- 7 |
-29.0551 kcal/mol |
10.8938 kcal/mol |
2.51907 kcal/mol |
23 53@LB@ | |@LB@5'-AGC...UGAUC CA A CGUU UCUCG...CUC-3'@LB@ AAAUG GGGGCA CA GGCAGUGGC@LB@ ||||| |||:|| || :||||||||@LB@ UUUAC CCCUGU GU UCGUCACCG@LB@3'-UUU...GGUGU A UUCUUU -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.64 kcal/mol@LB@Hybridization Energy -29.0551 kcal/mol@LB@Unfolding Energy - mRNA 10.8938 kcal/mol@LB@Unfolding Energy - sRNA 2.51907 kcal/mol@LB@@LB@Position - mRNA 24 -- 52@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |