| 94 |
0.002669 |
0.09947 |
b2659 |
csiD |
-13.62 |
0.002680 |
28 -- 48 |
1 -- 21 |
carbon starvation protein |
|
_____________27____________________49\n_____________|_____________________|\n5'-GUU...UGUCU__C________AA________GUUAA...UGG-3'\n______________CA_UUUGCCUU__UACCCUAC\n______________||_:||:|||:__||||||||\n______________GU_GAAUGGAG__AUGGGAUG\n3'-AUU...AUCUU__A________AC________-5'\n_____________|____________________|\n_____________22___________________1\n |
42 -- 48 |
1 -- 7 |
-22.7197 kcal/mol |
1.13457 kcal/mol |
7.99195 kcal/mol |
27 49@LB@ | |@LB@5'-GUU...UGUCU C AA GUUAA...UGG-3'@LB@ CA UUUGCCUU UACCCUAC@LB@ || :||:|||: ||||||||@LB@ GU GAAUGGAG AUGGGAUG@LB@3'-AUU...AUCUU A AC -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -22.7197 kcal/mol@LB@Unfolding Energy - mRNA 1.13457 kcal/mol@LB@Unfolding Energy - sRNA 7.99195 kcal/mol@LB@@LB@Position - mRNA 28 -- 48@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 146 |
0.005604 |
0.1342 |
b1637 |
tyrS |
-10.18 |
0.040102 |
30 -- 71 |
2 -- 50 |
tyrosyl-tRNA synthetase |
|
_____________29________________________________________________72\n_____________|_________________________________________________|\n5'-CAU...UACCA_______AAU___U_CG________U__U____________________AAAAG...CGA-3'\n______________GCGUGAA____GA_G__UGGAAGAU_GA_CGUCUUGC______ACCCUG\n______________:||||||____:|_|__||:|||||_||_|:||||:|______|||||:\n______________UGCACUU____UU_C__ACUUUCUA_CU_GUAGAAUG______UGGGAU\n3'-AUU...GCUAA_______CAUU__C_AG________U__U________GAGACA______G-5'\n_____________|_________________________________________________|\n_____________51________________________________________________1\n |
30 -- 36 |
44 -- 50 |
-35.883 kcal/mol |
13.0482 kcal/mol |
12.6769 kcal/mol |
29 72@LB@ | |@LB@5'-CAU...UACCA AAU U CG U U AAAAG...CGA-3'@LB@ GCGUGAA GA G UGGAAGAU GA CGUCUUGC ACCCUG@LB@ :|||||| :| | ||:||||| || |:||||:| |||||:@LB@ UGCACUU UU C ACUUUCUA CU GUAGAAUG UGGGAU@LB@3'-AUU...GCUAA CAUU C AG U U GAGACA G-5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -10.18 kcal/mol@LB@Hybridization Energy -35.883 kcal/mol@LB@Unfolding Energy - mRNA 13.0482 kcal/mol@LB@Unfolding Energy - sRNA 12.6769 kcal/mol@LB@@LB@Position - mRNA 30 -- 71@LB@Position - sRNA 2 -- 50@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 109 |
0.003426 |
0.1101 |
b2280 |
nuoJ |
-6.41 |
0.346318 |
31 -- 43 |
48 -- 59 |
NADH:ubiquinone oxidoreductase membrane subunit J |
|
_____________30____________44\n_____________|_____________|\n5'-GAU...GCCAG_________U___AGAAA...UUA-3'\n______________GAUCUGGUU_ACG\n______________:|||:|:||_|||\n______________UUAGGCUAA_UGC\n3'-AUU...UCGGU_____________ACUUC...AUG-5'\n_____________|_____________|\n_____________60____________47\n |
33 -- 39 |
51 -- 57 |
-11.2654 kcal/mol |
3.27917 kcal/mol |
1.55995 kcal/mol |
30 44@LB@ | |@LB@5'-GAU...GCCAG U AGAAA...UUA-3'@LB@ GAUCUGGUU ACG@LB@ :|||:|:|| |||@LB@ UUAGGCUAA UGC@LB@3'-AUU...UCGGU ACUUC...AUG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -11.2654 kcal/mol@LB@Unfolding Energy - mRNA 3.27917 kcal/mol@LB@Unfolding Energy - sRNA 1.55995 kcal/mol@LB@@LB@Position - mRNA 31 -- 43@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 111 |
0.003555 |
0.1127 |
b2938 |
speA |
-9.18 |
0.077057 |
36 -- 48 |
46 -- 58 |
biosynthetic arginine decarboxylase PLP-binding |
|
_____________35____________49\n_____________|_____________|\n5'-GUU...CUUAC_____________CUUAA...GCA-3'\n______________GUUCGGUUAUGUG\n______________:|:||:|||:|||\n______________UAGGCUAAUGCAC\n3'-AUU...CGGUU_____________UUCAU...AUG-5'\n_____________|_____________|\n_____________59____________45\n |
42 -- 48 |
46 -- 52 |
-14.853 kcal/mol |
3.8258 kcal/mol |
1.8625 kcal/mol |
35 49@LB@ | |@LB@5'-GUU...CUUAC CUUAA...GCA-3'@LB@ GUUCGGUUAUGUG@LB@ :|:||:|||:|||@LB@ UAGGCUAAUGCAC@LB@3'-AUU...CGGUU UUCAU...AUG-5'@LB@ | |@LB@ 59 45@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -14.853 kcal/mol@LB@Unfolding Energy - mRNA 3.8258 kcal/mol@LB@Unfolding Energy - sRNA 1.8625 kcal/mol@LB@@LB@Position - mRNA 36 -- 48@LB@Position - sRNA 46 -- 58@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 115 |
0.00375 |
0.1147 |
b1057 |
yceJ |
-5.38 |
0.522888 |
37 -- 59 |
1 -- 23 |
putative cytochrome b561 |
|
_____________36_______________________60\n_____________|________________________|\n5'-UGA...CACCA_______C__AUG___A_______UAAAC...UGU-3'\n______________GACAUCU_UG___CUG_ACCC_AC\n______________:||||||_|:___|||_||||_||\n______________UUGUAGA_AU___GAC_UGGG_UG\n3'-AUU...CUAUC__________GGA___A____A__-5'\n_____________|_______________________|\n_____________24______________________1\n |
37 -- 43 |
17 -- 23 |
-17.2281 kcal/mol |
3.85652 kcal/mol |
8.01506 kcal/mol |
36 60@LB@ | |@LB@5'-UGA...CACCA C AUG A UAAAC...UGU-3'@LB@ GACAUCU UG CUG ACCC AC@LB@ :|||||| |: ||| |||| ||@LB@ UUGUAGA AU GAC UGGG UG@LB@3'-AUU...CUAUC GGA A A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -5.38 kcal/mol@LB@Hybridization Energy -17.2281 kcal/mol@LB@Unfolding Energy - mRNA 3.85652 kcal/mol@LB@Unfolding Energy - sRNA 8.01506 kcal/mol@LB@@LB@Position - mRNA 37 -- 59@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 45 |
0.0004826 |
0.03773 |
b4133 |
cadC |
-9.27 |
0.072737 |
38 -- 110 |
5 -- 66 |
cadBA operon transcriptional activator |
|
_____________37______________________________________________________________________________111\n_____________|_______________________________________________________________________________|\n5'-GAU...GGUUC_____A______U_______AAUACUAUGUAAUCAA_____UUAU_______UAAAAAU__________A_________AAUAA...UAA-3'\n______________UCAGU_AAAUCC__UU_CGU________________GAAGU____GG_CUGG_______AACGUCUUGC_UUC___ACC\n______________||||:_||||||__||_|||________________|||||____||_|||:_______|||:||||:|_:||___|||\n______________AGUCG_UUUAGG__AA_GCA________________CUUCA____CC_GACU_______UUGUAGAAUG_GAG___UGG\n3'-AUU...UUAUA_____G______CU__U________________________UUUU__A____UUCUAUC______________ACA___GAUG-5'\n_____________|_______________________________________________________________________________|\n_____________67______________________________________________________________________________4\n |
97 -- 103 |
14 -- 20 |
-38.0459 kcal/mol |
10.2122 kcal/mol |
18.5819 kcal/mol |
37 111@LB@ | |@LB@5'-GAU...GGUUC A U AAUACUAUGUAAUCAA UUAU UAAAAAU A AAUAA...UAA-3'@LB@ UCAGU AAAUCC UU CGU GAAGU GG CUGG AACGUCUUGC UUC ACC@LB@ ||||: |||||| || ||| ||||| || |||: |||:||||:| :|| |||@LB@ AGUCG UUUAGG AA GCA CUUCA CC GACU UUGUAGAAUG GAG UGG@LB@3'-AUU...UUAUA G CU U UUUU A UUCUAUC ACA GAUG-5'@LB@ | |@LB@ 67 4@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -38.0459 kcal/mol@LB@Unfolding Energy - mRNA 10.2122 kcal/mol@LB@Unfolding Energy - sRNA 18.5819 kcal/mol@LB@@LB@Position - mRNA 38 -- 110@LB@Position - sRNA 5 -- 66@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 150 |
0.00611 |
0.1406 |
b0735 |
ybgE |
-10.35 |
0.035619 |
38 -- 71 |
5 -- 31 |
putative inner membrane protein in cydABX-ybgE operon |
|
_____________37_________________________________72\n_____________|__________________________________|\n5'-CUG...CCAAA_______UU______AAC___CACUC________AAGUA...UUU-3'\n______________GAAGAUA__GAACGU___ACC_____UCUGUACU\n______________:||||||__||||:|___|||_____|||||||:\n______________UUUCUAU__CUUGUA___UGG_____AGACAUGG\n3'-AUU...CAGAC_______________GAA________________GAUG-5'\n_____________|__________________________________|\n_____________32_________________________________4\n |
65 -- 71 |
5 -- 11 |
-23.0678 kcal/mol |
4.68737 kcal/mol |
8.05162 kcal/mol |
37 72@LB@ | |@LB@5'-CUG...CCAAA UU AAC CACUC AAGUA...UUU-3'@LB@ GAAGAUA GAACGU ACC UCUGUACU@LB@ :|||||| ||||:| ||| |||||||:@LB@ UUUCUAU CUUGUA UGG AGACAUGG@LB@3'-AUU...CAGAC GAA GAUG-5'@LB@ | |@LB@ 32 4@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -23.0678 kcal/mol@LB@Unfolding Energy - mRNA 4.68737 kcal/mol@LB@Unfolding Energy - sRNA 8.05162 kcal/mol@LB@@LB@Position - mRNA 38 -- 71@LB@Position - sRNA 5 -- 31@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 188 |
0.008316 |
0.1556 |
b3406 |
greB |
-8.11 |
0.146040 |
42 -- 55 |
52 -- 65 |
transcript cleavage factor |
|
_____________41_____________56\n_____________|______________|\n5'-AUU...GUCAC______________AUGAA...UGA-3'\n______________CAGCUAAAUCUGGU\n______________||||:|||||:|:|\n______________GUCGGUUUAGGCUA\n3'-AUU...UAUAA______________AUGCA...AUG-5'\n_____________|______________|\n_____________66_____________51\n |
49 -- 55 |
52 -- 58 |
-18.5321 kcal/mol |
4.27254 kcal/mol |
6.17277 kcal/mol |
41 56@LB@ | |@LB@5'-AUU...GUCAC AUGAA...UGA-3'@LB@ CAGCUAAAUCUGGU@LB@ ||||:|||||:|:|@LB@ GUCGGUUUAGGCUA@LB@3'-AUU...UAUAA AUGCA...AUG-5'@LB@ | |@LB@ 66 51@LB@@LB@@LB@Energy -8.11 kcal/mol@LB@Hybridization Energy -18.5321 kcal/mol@LB@Unfolding Energy - mRNA 4.27254 kcal/mol@LB@Unfolding Energy - sRNA 6.17277 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 52 -- 65@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 126 |
0.00422 |
0.1178 |
b1621 |
malX |
-14.96 |
0.000732 |
43 -- 87 |
1 -- 56 |
maltose and glucose-specific PTS enzyme IIB component and IIC component |
|
_____________42__________________________________________________________88\n_____________|___________________________________________________________|\n5'-AUG...ACUCC____________C___________________A______________UAUU________ACCCG...GCA-3'\n______________CUGAUUAUGUGA_______________AGAUA_AACGUUUUACCUUU____UAUCUUAU\n______________|:|||||:||||_______________|||||_|||:|:||||||:|____||:|:||:\n______________GGCUAAUGCACU_______________UCUAU_UUGUAGAAUGGAGA____AUGGGAUG\n3'-AUU...GUUUA____________UCAUUUUCCAGACUU_____C______________C___________-5'\n_____________|__________________________________________________________|\n_____________57_________________________________________________________1\n |
81 -- 87 |
1 -- 7 |
-37.7188 kcal/mol |
10.08 kcal/mol |
12.7022 kcal/mol |
42 88@LB@ | |@LB@5'-AUG...ACUCC C A UAUU ACCCG...GCA-3'@LB@ CUGAUUAUGUGA AGAUA AACGUUUUACCUUU UAUCUUAU@LB@ |:|||||:|||| ||||| |||:|:||||||:| ||:|:||:@LB@ GGCUAAUGCACU UCUAU UUGUAGAAUGGAGA AUGGGAUG@LB@3'-AUU...GUUUA UCAUUUUCCAGACUU C C -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -14.96 kcal/mol@LB@Hybridization Energy -37.7188 kcal/mol@LB@Unfolding Energy - mRNA 10.08 kcal/mol@LB@Unfolding Energy - sRNA 12.7022 kcal/mol@LB@@LB@Position - mRNA 43 -- 87@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 162 |
0.006534 |
0.1413 |
b3771 |
ilvD |
-6.87 |
0.280008 |
44 -- 51 |
49 -- 56 |
dihydroxyacid dehydratase |
|
_____________43_______52\n_____________|________|\n5'-GCG...GUGGC________CAAAC...GUA-3'\n______________CCGGUUAC\n______________|||:||||\n______________GGCUAAUG\n3'-AUU...GUUUA________CACUU...AUG-5'\n_____________|________|\n_____________57_______48\n |
45 -- 51 |
49 -- 55 |
-9.72973 kcal/mol |
2.55538 kcal/mol |
0.317884 kcal/mol |
43 52@LB@ | |@LB@5'-GCG...GUGGC CAAAC...GUA-3'@LB@ CCGGUUAC@LB@ |||:||||@LB@ GGCUAAUG@LB@3'-AUU...GUUUA CACUU...AUG-5'@LB@ | |@LB@ 57 48@LB@@LB@@LB@Energy -6.87 kcal/mol@LB@Hybridization Energy -9.72973 kcal/mol@LB@Unfolding Energy - mRNA 2.55538 kcal/mol@LB@Unfolding Energy - sRNA 0.317884 kcal/mol@LB@@LB@Position - mRNA 44 -- 51@LB@Position - sRNA 49 -- 56@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 49 -- 55@LB@ |
