| 47 |
0.0005047 |
0.03778 |
b1888 |
cheA |
-10.26 |
0.037926 |
179 -- 191 |
53 -- 66 |
fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
|
_____________178____________192\n_____________|______________|\n5'-GAU...UGCCA______________GGUGA...AAG-3'\n______________UCAGCCGAA_CCGA\n______________||||||:||_||||\n______________AGUCGGUUU_GGCU\n3'-AUU...UUAUA_________A____AAUGC...AUG-5'\n_____________|______________|\n_____________67_____________52\n |
181 -- 187 |
58 -- 64 |
-19.401 kcal/mol |
2.99348 kcal/mol |
6.16775 kcal/mol |
178 192@LB@ | |@LB@5'-GAU...UGCCA GGUGA...AAG-3'@LB@ UCAGCCGAA CCGA@LB@ ||||||:|| ||||@LB@ AGUCGGUUU GGCU@LB@3'-AUU...UUAUA A AAUGC...AUG-5'@LB@ | |@LB@ 67 52@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -19.401 kcal/mol@LB@Unfolding Energy - mRNA 2.99348 kcal/mol@LB@Unfolding Energy - sRNA 6.16775 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 53 -- 66@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 145 |
0.005462 |
0.1325 |
b3239 |
yhcO |
-10.93 |
0.023720 |
179 -- 225 |
2 -- 55 |
putative barnase inhibitor |
|
_____________178______________________________________________________226\n_____________|________________________________________________________|\n5'-CUA...CGCCG___A_______C___________AAC______________A_______________AUGAG...GCG-3'\n______________CGA__ACGUGA_GGU____GG_C____AGAU_GAAUAUUU_UACCUUUG_AUUUUG\n______________|||__||||||_:||____||_|____||||_|||:||:|_|||||:||_|:::|:\n______________GCU__UGCACU_UCA____CC_G____UCUA_CUUGUAGA_AUGGAGAC_UGGGAU\n3'-AUU...UUUAG___AA__________UUUU__A_ACUU____U_________________A______G-5'\n_____________|________________________________________________________|\n_____________56_______________________________________________________1\n |
213 -- 219 |
9 -- 15 |
-30.2735 kcal/mol |
6.67064 kcal/mol |
12.6986 kcal/mol |
178 226@LB@ | |@LB@5'-CUA...CGCCG A C AAC A AUGAG...GCG-3'@LB@ CGA ACGUGA GGU GG C AGAU GAAUAUUU UACCUUUG AUUUUG@LB@ ||| |||||| :|| || | |||| |||:||:| |||||:|| |:::|:@LB@ GCU UGCACU UCA CC G UCUA CUUGUAGA AUGGAGAC UGGGAU@LB@3'-AUU...UUUAG AA UUUU A ACUU U A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -30.2735 kcal/mol@LB@Unfolding Energy - mRNA 6.67064 kcal/mol@LB@Unfolding Energy - sRNA 12.6986 kcal/mol@LB@@LB@Position - mRNA 179 -- 225@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 185 |
0.008247 |
0.1556 |
b4195 |
ulaC |
-8.57 |
0.111851 |
181 -- 191 |
40 -- 50 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________180_________192\n_____________|___________|\n5'-GCG...GCAGG___________GGACG...UGG-3'\n______________AUGUGAAGUAA\n______________|:|||||||||\n______________UGCACUUCAUU\n3'-AUU...GCUAA___________UUCCA...AUG-5'\n_____________|___________|\n_____________51__________39\n |
185 -- 191 |
40 -- 46 |
-13.163 kcal/mol |
1.2893 kcal/mol |
3.32158 kcal/mol |
180 192@LB@ | |@LB@5'-GCG...GCAGG GGACG...UGG-3'@LB@ AUGUGAAGUAA@LB@ |:|||||||||@LB@ UGCACUUCAUU@LB@3'-AUU...GCUAA UUCCA...AUG-5'@LB@ | |@LB@ 51 39@LB@@LB@@LB@Energy -8.57 kcal/mol@LB@Hybridization Energy -13.163 kcal/mol@LB@Unfolding Energy - mRNA 1.2893 kcal/mol@LB@Unfolding Energy - sRNA 3.32158 kcal/mol@LB@@LB@Position - mRNA 181 -- 191@LB@Position - sRNA 40 -- 50@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 101 |
0.00315 |
0.1097 |
b1822 |
rlmA |
-7.85 |
0.169074 |
182 -- 190 |
1 -- 9 |
23S rRNA m(1)G745 methyltransferase SAM-dependent |
|
_____________181_______191\n_____________|_________|\n5'-AAG...CUUUA_________CGGAG...GGU-3'\n______________GUAUCCUGC\n______________|||:|||:|\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
184 -- 190 |
1 -- 7 |
-13.1594 kcal/mol |
3.20778 kcal/mol |
2.12872 kcal/mol |
181 191@LB@ | |@LB@5'-AAG...CUUUA CGGAG...GGU-3'@LB@ GUAUCCUGC@LB@ |||:|||:|@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -13.1594 kcal/mol@LB@Unfolding Energy - mRNA 3.20778 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 182 -- 190@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 124 |
0.004173 |
0.1178 |
b0131 |
panD |
-9.38 |
0.067843 |
182 -- 197 |
22 -- 38 |
aspartate 1-decarboxylase |
|
_____________181_______________198\n_____________|_________________|\n5'-AUU...CGACA____A____________GUUAU...UUG-3'\n______________GGGU__GAAAGGUAGAA\n______________:|||__|||||:|||||\n______________UCCA__CUUUCUAUCUU\n3'-AUU...CAUUU____GA___________GUAGA...AUG-5'\n_____________|_________________|\n_____________39________________21\n |
191 -- 197 |
22 -- 28 |
-16.986 kcal/mol |
1.71047 kcal/mol |
5.81616 kcal/mol |
181 198@LB@ | |@LB@5'-AUU...CGACA A GUUAU...UUG-3'@LB@ GGGU GAAAGGUAGAA@LB@ :||| |||||:|||||@LB@ UCCA CUUUCUAUCUU@LB@3'-AUU...CAUUU GA GUAGA...AUG-5'@LB@ | |@LB@ 39 21@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -16.986 kcal/mol@LB@Unfolding Energy - mRNA 1.71047 kcal/mol@LB@Unfolding Energy - sRNA 5.81616 kcal/mol@LB@@LB@Position - mRNA 182 -- 197@LB@Position - sRNA 22 -- 38@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 1 |
0 |
0 |
b0757 |
galK |
-15.06 |
0.000658 |
183 -- 231 |
8 -- 60 |
galactokinase |
|
_____________182_____________________________________________________232\n_____________|_______________________________________________________|\n5'-CAU...UUCGC_______GA______U___AAAU_____________AAA____CA__________UUGCC...GUG-3'\n______________GAAUCCG_____GUG_AAG____GAG_UCUGAAAGA___AACA____AUCUCUGU\n______________:||||||_____|||_|||____:||_|||||||||___||||____|:||||||\n______________UUUAGGC_____CAC_UUC____UUC_AGACUUUCU___UUGU____UGGAGACA\n3'-AUU...GUCGG_______UAAUG_______AUU____C_________AUC____AGAA________UGGGAUG-5'\n_____________|_______________________________________________________|\n_____________61______________________________________________________7\n |
225 -- 231 |
8 -- 14 |
-35.0906 kcal/mol |
7.3474 kcal/mol |
12.6967 kcal/mol |
182 232@LB@ | |@LB@5'-CAU...UUCGC GA U AAAU AAA CA UUGCC...GUG-3'@LB@ GAAUCCG GUG AAG GAG UCUGAAAGA AACA AUCUCUGU@LB@ :|||||| ||| ||| :|| ||||||||| |||| |:||||||@LB@ UUUAGGC CAC UUC UUC AGACUUUCU UUGU UGGAGACA@LB@3'-AUU...GUCGG UAAUG AUU C AUC AGAA UGGGAUG-5'@LB@ | |@LB@ 61 7@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -35.0906 kcal/mol@LB@Unfolding Energy - mRNA 7.3474 kcal/mol@LB@Unfolding Energy - sRNA 12.6967 kcal/mol@LB@@LB@Position - mRNA 183 -- 231@LB@Position - sRNA 8 -- 60@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 178 |
0.007695 |
0.1511 |
b4567 |
yjjZ |
-7.25 |
0.231371 |
185 -- 218 |
2 -- 33 |
uncharacterized protein |
|
_____________184_________________________________219\n_____________|___________________________________|\n5'-CGG...AUCAA_______GAU___AU___G____AA______G___GGCAG...GGA-3'\n______________UGAAAGA___GAA__CAU_UUGC__C_GUAC_CUG\n______________|||||||___|||__|||_||:|__|_||||_||:\n______________ACUUUCU___CUU__GUA_AAUG__G_CAUG_GAU\n3'-AUU...UCCAG_______AU_________G____GA_A____G___G-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
185 -- 191 |
27 -- 33 |
-22.8177 kcal/mol |
6.54395 kcal/mol |
9.04499 kcal/mol |
184 219@LB@ | |@LB@5'-CGG...AUCAA GAU AU G AA G GGCAG...GGA-3'@LB@ UGAAAGA GAA CAU UUGC C GUAC CUG@LB@ ||||||| ||| ||| ||:| | |||| ||:@LB@ ACUUUCU CUU GUA AAUG G CAUG GAU@LB@3'-AUU...UCCAG AU G GA A G G-5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -7.25 kcal/mol@LB@Hybridization Energy -22.8177 kcal/mol@LB@Unfolding Energy - mRNA 6.54395 kcal/mol@LB@Unfolding Energy - sRNA 9.04499 kcal/mol@LB@@LB@Position - mRNA 185 -- 218@LB@Position - sRNA 2 -- 33@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 29 |
0.0002348 |
0.02849 |
b4015 |
aceA |
-10.12 |
0.041760 |
186 -- 214 |
1 -- 27 |
isocitrate lyase |
|
_____________185____________________________215\n_____________|______________________________|\n5'-UUG...UAACU______________ACA__AAA____G___ACAAC...UGA-3'\n______________AUGGAGCAUCU_GC___UG___ACCC_UAC\n______________||:||:|||||_:|___||___||||_|||\n______________UAUCUUGUAGA_UG___AC___UGGG_AUG\n3'-AUU...CUUUC___________A__GAG__A__________-5'\n_____________|_____________________________|\n_____________28____________________________1\n |
190 -- 196 |
17 -- 23 |
-23.282 kcal/mol |
5.13768 kcal/mol |
8.046 kcal/mol |
185 215@LB@ | |@LB@5'-UUG...UAACU ACA AAA G ACAAC...UGA-3'@LB@ AUGGAGCAUCU GC UG ACCC UAC@LB@ ||:||:||||| :| || |||| |||@LB@ UAUCUUGUAGA UG AC UGGG AUG@LB@3'-AUU...CUUUC A GAG A -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -23.282 kcal/mol@LB@Unfolding Energy - mRNA 5.13768 kcal/mol@LB@Unfolding Energy - sRNA 8.046 kcal/mol@LB@@LB@Position - mRNA 186 -- 214@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 65 |
0.001093 |
0.05856 |
b1519 |
tam |
-11.83 |
0.011992 |
187 -- 231 |
1 -- 50 |
trans-aconitate methyltransferase |
|
_____________186____________________________________________________232\n_____________|______________________________________________________|\n5'-UUU...CGCUG_____________AAAU______C_________C__________U___A_____ACUUU...AAU-3'\n______________ACG_GGAGUAAAA____GUCUGA____UGGAAC______CCUCU_UAU_UCUAC\n______________|||_|:|||||||____||||||____|:||||______|||||_||:_:||||\n______________UGC_CUUCAUUUU____CAGACU____AUCUUG______GGAGA_AUG_GGAUG\n3'-AUU...GCUAA___A_________C_________UUCU______UAGAAU_____C_________-5'\n_____________|_____________________________________________________|\n_____________51____________________________________________________1\n |
191 -- 197 |
39 -- 45 |
-32.7669 kcal/mol |
8.27841 kcal/mol |
12.6772 kcal/mol |
186 232@LB@ | |@LB@5'-UUU...CGCUG AAAU C C U A ACUUU...AAU-3'@LB@ ACG GGAGUAAAA GUCUGA UGGAAC CCUCU UAU UCUAC@LB@ ||| |:||||||| |||||| |:|||| ||||| ||: :||||@LB@ UGC CUUCAUUUU CAGACU AUCUUG GGAGA AUG GGAUG@LB@3'-AUU...GCUAA A C UUCU UAGAAU C -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -32.7669 kcal/mol@LB@Unfolding Energy - mRNA 8.27841 kcal/mol@LB@Unfolding Energy - sRNA 12.6772 kcal/mol@LB@@LB@Position - mRNA 187 -- 231@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 50 |
0.0006038 |
0.04249 |
b3755 |
yieP |
-5.20 |
0.556147 |
189 -- 196 |
25 -- 32 |
putative transcriptional regulator |
|
_____________188______197\n_____________|________|\n5'-UUC...AAAAA________AGUAA...CCG-3'\n______________GGAAGAUA\n______________|:||||||\n______________CUUUCUAU\n3'-AUU...CCAGA________CUUGU...AUG-5'\n_____________|________|\n_____________33_______24\n |
190 -- 196 |
25 -- 31 |
-8.32385 kcal/mol |
1.19727 kcal/mol |
1.85262 kcal/mol |
188 197@LB@ | |@LB@5'-UUC...AAAAA AGUAA...CCG-3'@LB@ GGAAGAUA@LB@ |:||||||@LB@ CUUUCUAU@LB@3'-AUU...CCAGA CUUGU...AUG-5'@LB@ | |@LB@ 33 24@LB@@LB@@LB@Energy -5.20 kcal/mol@LB@Hybridization Energy -8.32385 kcal/mol@LB@Unfolding Energy - mRNA 1.19727 kcal/mol@LB@Unfolding Energy - sRNA 1.85262 kcal/mol@LB@@LB@Position - mRNA 189 -- 196@LB@Position - sRNA 25 -- 32@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 25 -- 31@LB@ |
