| 4 |
1.471e-05 |
0.01227 |
bsu32200 |
yutJ |
-17.92 |
0.007061 |
210 -- 239 |
21 -- 53 |
NADH dehydrogenase-like protein YutJ |
|
_____________209_______________________________240\n_____________|_________________________________|\n5'-UGA...AAAAA________________C_____UUAC_______AUGCG...UAA-3'\n______________UUGG_UCUUGAUC_GG_GGAGG_____GGGAAC\n______________|:||_||||||||_|:_:||||_____||||||\n______________AGCC_AGAACUAG_CU_UCUCC_____CCCUUG\n3'-UUU...AAAAA____U________A__A_____CCAAC______UCUCU...AUA-5'\n_____________|_________________________________|\n_____________54________________________________20\n |
215 -- 221 |
41 -- 47 |
-30.8017 kcal/mol |
10.1098 kcal/mol |
2.77573 kcal/mol |
209 240@LB@ | |@LB@5'-UGA...AAAAA C UUAC AUGCG...UAA-3'@LB@ UUGG UCUUGAUC GG GGAGG GGGAAC@LB@ |:|| |||||||| |: :|||| ||||||@LB@ AGCC AGAACUAG CU UCUCC CCCUUG@LB@3'-UUU...AAAAA U A A CCAAC UCUCU...AUA-5'@LB@ | |@LB@ 54 20@LB@@LB@@LB@Energy -17.92 kcal/mol@LB@Hybridization Energy -30.8017 kcal/mol@LB@Unfolding Energy - mRNA 10.1098 kcal/mol@LB@Unfolding Energy - sRNA 2.77573 kcal/mol@LB@@LB@Position - mRNA 210 -- 239@LB@Position - sRNA 21 -- 53@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 26 |
0.0005174 |
0.06638 |
bsu28170 |
hemA |
-17.53 |
0.008676 |
171 -- 186 |
24 -- 36 |
glutamyl-tRNA reductase |
|
_____________170______________187\n_____________|________________|\n5'-AUG...AAUUA___UU___U_______GUGUA...UGC-3'\n______________AGA__GGG_GUUGGGG\n______________|||__|||_|||||||\n______________UCU__CCC_CAACCCC\n3'-UUU...GACUA________________UUGUC...AUA-5'\n_____________|________________|\n_____________37_______________23\n |
180 -- 186 |
24 -- 30 |
-19.8849 kcal/mol |
2.21391 kcal/mol |
0.138435 kcal/mol |
170 187@LB@ | |@LB@5'-AUG...AAUUA UU U GUGUA...UGC-3'@LB@ AGA GGG GUUGGGG@LB@ ||| ||| |||||||@LB@ UCU CCC CAACCCC@LB@3'-UUU...GACUA UUGUC...AUA-5'@LB@ | |@LB@ 37 23@LB@@LB@@LB@Energy -17.53 kcal/mol@LB@Hybridization Energy -19.8849 kcal/mol@LB@Unfolding Energy - mRNA 2.21391 kcal/mol@LB@Unfolding Energy - sRNA 0.138435 kcal/mol@LB@@LB@Position - mRNA 171 -- 186@LB@Position - sRNA 24 -- 36@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 14 |
0.0002247 |
0.05257 |
bsu30160 |
ytcQ |
-17.33 |
0.009670 |
159 -- 223 |
10 -- 51 |
peptide ABC transporter substrate-binding protein |
|
_____________158__________________________________________________________________224\n_____________|____________________________________________________________________|\n5'-UUG...UGCUG___________AAAGGAUAAAGAAAUA___AAC________ACGA____A___AAAU___________UUUGA...GCA-3'\n______________GGAUCU__GUC________________UGA___GGAGGGGU____UGGG_AAC____GGAGGGU_GCU\n______________||||||__:||________________|||___:|||||||____||||_|||____:|||:||_|||\n______________CCUAGA__UAG________________ACU___UCUCCCCA____ACCC_UUG____UCUCUCA_CGA\n3'-UUU...AAAAG______AC______________________A__________________C______________U___AGAGA...AUA-5'\n_____________|____________________________________________________________________|\n_____________52___________________________________________________________________9\n |
214 -- 220 |
14 -- 20 |
-40.5 kcal/mol |
13.2168 kcal/mol |
9.95655 kcal/mol |
158 224@LB@ | |@LB@5'-UUG...UGCUG AAAGGAUAAAGAAAUA AAC ACGA A AAAU UUUGA...GCA-3'@LB@ GGAUCU GUC UGA GGAGGGGU UGGG AAC GGAGGGU GCU@LB@ |||||| :|| ||| :||||||| |||| ||| :|||:|| |||@LB@ CCUAGA UAG ACU UCUCCCCA ACCC UUG UCUCUCA CGA@LB@3'-UUU...AAAAG AC A C U AGAGA...AUA-5'@LB@ | |@LB@ 52 9@LB@@LB@@LB@Energy -17.33 kcal/mol@LB@Hybridization Energy -40.5 kcal/mol@LB@Unfolding Energy - mRNA 13.2168 kcal/mol@LB@Unfolding Energy - sRNA 9.95655 kcal/mol@LB@@LB@Position - mRNA 159 -- 223@LB@Position - sRNA 10 -- 51@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 1 |
3.729e-08 |
0.0001244 |
bsu14890 |
ctaC |
-17.27 |
0.009980 |
187 -- 199 |
23 -- 34 |
cytochrome c oxidase subunit 2 |
|
_____________186___________200\n_____________|_____________|\n5'-CGA...AGAAA__________U__AAUGG...GCG-3'\n______________AGGGGUUGGG_GA\n______________||||||||||_||\n______________UCCCCAACCC_CU\n3'-UUU...CUAUC_____________UGUCU...AUA-5'\n_____________|_____________|\n_____________35____________22\n |
190 -- 196 |
25 -- 31 |
-21.5157 kcal/mol |
4.12609 kcal/mol |
0.123213 kcal/mol |
186 200@LB@ | |@LB@5'-CGA...AGAAA U AAUGG...GCG-3'@LB@ AGGGGUUGGG GA@LB@ |||||||||| ||@LB@ UCCCCAACCC CU@LB@3'-UUU...CUAUC UGUCU...AUA-5'@LB@ | |@LB@ 35 22@LB@@LB@@LB@Energy -17.27 kcal/mol@LB@Hybridization Energy -21.5157 kcal/mol@LB@Unfolding Energy - mRNA 4.12609 kcal/mol@LB@Unfolding Energy - sRNA 0.123213 kcal/mol@LB@@LB@Position - mRNA 187 -- 199@LB@Position - sRNA 23 -- 34@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 178 |
0.01684 |
0.3152 |
bsu09460 |
ctrA |
-17.20 |
0.010320 |
182 -- 213 |
20 -- 50 |
amino acid permease |
|
_____________181_________________________________214\n_____________|___________________________________|\n5'-CAA...UAGAU____GG__G____________AA__AAA_______UUUUU...UAA-3'\n______________GAUC__GA_UUGA___AGGGG__UG___GGGAGCG\n______________||||__||_:|||___|||||__||___||||:|:\n______________CUAG__CU_GACU___UCCCC__AC___CCCUUGU\n3'-UUU...AAAGC____AA__A____AUC_____A_____________CUCUC...AUA-5'\n_____________|___________________________________|\n_____________51__________________________________19\n |
207 -- 213 |
20 -- 26 |
-25.5851 kcal/mol |
4.15406 kcal/mol |
4.22897 kcal/mol |
181 214@LB@ | |@LB@5'-CAA...UAGAU GG G AA AAA UUUUU...UAA-3'@LB@ GAUC GA UUGA AGGGG UG GGGAGCG@LB@ |||| || :||| ||||| || ||||:|:@LB@ CUAG CU GACU UCCCC AC CCCUUGU@LB@3'-UUU...AAAGC AA A AUC A CUCUC...AUA-5'@LB@ | |@LB@ 51 19@LB@@LB@@LB@Energy -17.20 kcal/mol@LB@Hybridization Energy -25.5851 kcal/mol@LB@Unfolding Energy - mRNA 4.15406 kcal/mol@LB@Unfolding Energy - sRNA 4.22897 kcal/mol@LB@@LB@Position - mRNA 182 -- 213@LB@Position - sRNA 20 -- 50@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 7 |
4.152e-05 |
0.01979 |
bsu05670 |
ydgJ |
-17.13 |
0.010734 |
234 -- 258 |
25 -- 49 |
MarR family transcriptional regulator |
|
_____________233_______________________259\n_____________|_________________________|\n5'-AAG...UAAUA_______CAG__A___A___A____UUUUG...AUC-3'\n______________GUUUUGA___GA_AGA_GGG_UGGG\n______________:|:||||___||_|||_|||_||||\n______________UAGAACU___CU_UCU_CCC_ACCC\n3'-UUU...AAGCC_______AGA__A___C___A____CUUGU...AUA-5'\n_____________|_________________________|\n_____________50________________________24\n |
234 -- 240 |
43 -- 49 |
-20.9262 kcal/mol |
2.82407 kcal/mol |
0.976049 kcal/mol |
233 259@LB@ | |@LB@5'-AAG...UAAUA CAG A A A UUUUG...AUC-3'@LB@ GUUUUGA GA AGA GGG UGGG@LB@ :|:|||| || ||| ||| ||||@LB@ UAGAACU CU UCU CCC ACCC@LB@3'-UUU...AAGCC AGA A C A CUUGU...AUA-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -17.13 kcal/mol@LB@Hybridization Energy -20.9262 kcal/mol@LB@Unfolding Energy - mRNA 2.82407 kcal/mol@LB@Unfolding Energy - sRNA 0.976049 kcal/mol@LB@@LB@Position - mRNA 234 -- 258@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 150 |
0.01344 |
0.2966 |
bsu27040 |
levG |
-16.98 |
0.011562 |
166 -- 191 |
30 -- 50 |
PTS system-fructose-specific transporter subunit IID |
|
_____________165_________________________192\n_____________|___________________________|\n5'-UUC...AUGAU_________GCCUAAAC__________GAAGA...CAA-3'\n______________GAUCUUGAU________GAU_GAGGGG\n______________|||||||||________|||_||||||\n______________CUAGAACUA________CUA_CUCCCC\n3'-UUU...AAAGC_________GA_________U______AACCC...AUA-5'\n_____________|___________________________|\n_____________51__________________________29\n |
168 -- 174 |
42 -- 48 |
-23.2775 kcal/mol |
5.32128 kcal/mol |
0.974272 kcal/mol |
165 192@LB@ | |@LB@5'-UUC...AUGAU GCCUAAAC GAAGA...CAA-3'@LB@ GAUCUUGAU GAU GAGGGG@LB@ ||||||||| ||| ||||||@LB@ CUAGAACUA CUA CUCCCC@LB@3'-UUU...AAAGC GA U AACCC...AUA-5'@LB@ | |@LB@ 51 29@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -23.2775 kcal/mol@LB@Unfolding Energy - mRNA 5.32128 kcal/mol@LB@Unfolding Energy - sRNA 0.974272 kcal/mol@LB@@LB@Position - mRNA 166 -- 191@LB@Position - sRNA 30 -- 50@LB@Position Seed - mRNA 168 -- 174@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 30 |
0.001001 |
0.1113 |
bsu08780 |
ygaJ |
-16.90 |
0.012052 |
218 -- 231 |
24 -- 39 |
peptidase YgaJ |
|
_____________217______________232\n_____________|________________|\n5'-UGU...AUUGC_________C______GUUUU...AGC-3'\n______________GAUGGGGGG___GGGG\n______________|||:|:|||___||||\n______________CUAUCUCCC___CCCC\n3'-UUU...CUAGA_________CAA____UUGUC...AUA-5'\n_____________|________________|\n_____________40_______________23\n |
220 -- 226 |
31 -- 37 |
-22.0746 kcal/mol |
4.38344 kcal/mol |
0.790436 kcal/mol |
217 232@LB@ | |@LB@5'-UGU...AUUGC C GUUUU...AGC-3'@LB@ GAUGGGGGG GGGG@LB@ |||:|:||| ||||@LB@ CUAUCUCCC CCCC@LB@3'-UUU...CUAGA CAA UUGUC...AUA-5'@LB@ | |@LB@ 40 23@LB@@LB@@LB@Energy -16.90 kcal/mol@LB@Hybridization Energy -22.0746 kcal/mol@LB@Unfolding Energy - mRNA 4.38344 kcal/mol@LB@Unfolding Energy - sRNA 0.790436 kcal/mol@LB@@LB@Position - mRNA 218 -- 231@LB@Position - sRNA 24 -- 39@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 47 |
0.002107 |
0.1496 |
bsu10620 |
addB |
-16.79 |
0.012734 |
176 -- 222 |
12 -- 44 |
ATP-dependent helicase/deoxyribonuclease subunit B |
|
_____________175_____________________________________________223\n_____________|_______________________________________________|\n5'-UAG...AGAGA___AAAAAG________CUUCUAAUUU__________UUUUU_____GCAGG...AGC-3'\n______________GAU______AGAGGGGU__________GGGAGCAGAG_____AGUAG\n______________|||______||||||||__________||||:|||||_____|||||\n______________CUA______UCUCCCCA__________CCCUUGUCUC_____UCAUC\n3'-UUU...UAGAA___GACUA_________AC____________________________GAAGA...AUA-5'\n_____________|_______________________________________________|\n_____________45______________________________________________11\n |
206 -- 212 |
17 -- 23 |
-35.2405 kcal/mol |
8.50165 kcal/mol |
9.94637 kcal/mol |
175 223@LB@ | |@LB@5'-UAG...AGAGA AAAAAG CUUCUAAUUU UUUUU GCAGG...AGC-3'@LB@ GAU AGAGGGGU GGGAGCAGAG AGUAG@LB@ ||| |||||||| ||||:||||| |||||@LB@ CUA UCUCCCCA CCCUUGUCUC UCAUC@LB@3'-UUU...UAGAA GACUA AC GAAGA...AUA-5'@LB@ | |@LB@ 45 11@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -35.2405 kcal/mol@LB@Unfolding Energy - mRNA 8.50165 kcal/mol@LB@Unfolding Energy - sRNA 9.94637 kcal/mol@LB@@LB@Position - mRNA 176 -- 222@LB@Position - sRNA 12 -- 44@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 127 |
0.01117 |
0.2883 |
bsu05980 |
tatAY |
-16.78 |
0.012784 |
171 -- 194 |
21 -- 43 |
Sec-independent protein translocase protein TatAy |
|
_____________170______________________195\n_____________|________________________|\n5'-CCG...AGGAA___GA________AAA__A_____CCAAA...ACA-3'\n______________AUC__AUAGAGGG___GG_GGAGC\n______________|||__||||||||___||_|||:|\n______________UAG__UAUCUCCC___CC_CCUUG\n3'-UUU...AGAAC___AC________CAA________UCUCU...AUA-5'\n_____________|________________________|\n_____________44_______________________20\n |
177 -- 183 |
31 -- 37 |
-24.2003 kcal/mol |
4.65314 kcal/mol |
2.76238 kcal/mol |
170 195@LB@ | |@LB@5'-CCG...AGGAA GA AAA A CCAAA...ACA-3'@LB@ AUC AUAGAGGG GG GGAGC@LB@ ||| |||||||| || |||:|@LB@ UAG UAUCUCCC CC CCUUG@LB@3'-UUU...AGAAC AC CAA UCUCU...AUA-5'@LB@ | |@LB@ 44 20@LB@@LB@@LB@Energy -16.78 kcal/mol@LB@Hybridization Energy -24.2003 kcal/mol@LB@Unfolding Energy - mRNA 4.65314 kcal/mol@LB@Unfolding Energy - sRNA 2.76238 kcal/mol@LB@@LB@Position - mRNA 171 -- 194@LB@Position - sRNA 21 -- 43@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 31 -- 37@LB@ |
