| 35 |
0.001389 |
0.1324 |
bsu24570 |
gcvT |
-12.27 |
0.095214 |
256 -- 273 |
25 -- 46 |
aminomethyltransferase |
|
_____________255____________________274\n_____________|______________________|\n5'-CUC...AACGA_______C_______C______AGCUU...UAA-3'\n______________UUGAUUU___GGAGG___UGGG\n______________|||||:|___:||||___||||\n______________AACUAGA___UCUCC___ACCC\n3'-UUU...CCUAG_______CUA_____CCA____CUUGU...AUA-5'\n_____________|______________________|\n_____________47_____________________24\n |
256 -- 262 |
40 -- 46 |
-17.62 kcal/mol |
4.38211 kcal/mol |
0.972727 kcal/mol |
255 274@LB@ | |@LB@5'-CUC...AACGA C C AGCUU...UAA-3'@LB@ UUGAUUU GGAGG UGGG@LB@ |||||:| :|||| ||||@LB@ AACUAGA UCUCC ACCC@LB@3'-UUU...CCUAG CUA CCA CUUGU...AUA-5'@LB@ | |@LB@ 47 24@LB@@LB@@LB@Energy -12.27 kcal/mol@LB@Hybridization Energy -17.62 kcal/mol@LB@Unfolding Energy - mRNA 4.38211 kcal/mol@LB@Unfolding Energy - sRNA 0.972727 kcal/mol@LB@@LB@Position - mRNA 256 -- 273@LB@Position - sRNA 25 -- 46@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 190 |
0.01911 |
0.3269 |
bsu05370 |
ydfD |
-12.16 |
0.099313 |
269 -- 294 |
11 -- 36 |
GntR family transcriptional regulator |
bsu10880 |
_____________268________________________295\n_____________|__________________________|\n5'-AAA...AUUAA____AAAAUA__A_____________CGAUUG-3'\n______________AGAG______GG_AAUGGAGAGUGGC\n______________||||______||_||::||||||:||\n______________UCUC______CC_UUGUCUCUCAUCG\n3'-UUU...GACUA____CCCAAC__C_____________AAGAG...AUA-5'\n_____________|__________________________|\n_____________37_________________________10\n |
288 -- 294 |
11 -- 17 |
-24.9379 kcal/mol |
3.68177 kcal/mol |
9.10067 kcal/mol |
268 295@LB@ | |@LB@5'-AAA...AUUAA AAAAUA A CGAUUG-3'@LB@ AGAG GG AAUGGAGAGUGGC@LB@ |||| || ||::||||||:||@LB@ UCUC CC UUGUCUCUCAUCG@LB@3'-UUU...GACUA CCCAAC C AAGAG...AUA-5'@LB@ | |@LB@ 37 10@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -24.9379 kcal/mol@LB@Unfolding Energy - mRNA 3.68177 kcal/mol@LB@Unfolding Energy - sRNA 9.10067 kcal/mol@LB@@LB@Position - mRNA 269 -- 294@LB@Position - sRNA 11 -- 36@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 165 |
0.01546 |
0.3127 |
bsu02230 |
purT |
-12.11 |
0.100898 |
185 -- 195 |
30 -- 39 |
phosphoribosylglycinamide formyltransferase |
|
_____________184_________196\n_____________|___________|\n5'-GAU...GAACA___A_______CAAAG...UUG-3'\n______________GAU_GGAGGGG\n______________|||_:||||||\n______________CUA_UCUCCCC\n3'-UUU...CUAGA___________AACCC...AUA-5'\n_____________|___________|\n_____________40__________29\n |
189 -- 195 |
30 -- 36 |
-15.5568 kcal/mol |
2.66346 kcal/mol |
0.779184 kcal/mol |
184 196@LB@ | |@LB@5'-GAU...GAACA A CAAAG...UUG-3'@LB@ GAU GGAGGGG@LB@ ||| :||||||@LB@ CUA UCUCCCC@LB@3'-UUU...CUAGA AACCC...AUA-5'@LB@ | |@LB@ 40 29@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -15.5568 kcal/mol@LB@Unfolding Energy - mRNA 2.66346 kcal/mol@LB@Unfolding Energy - sRNA 0.779184 kcal/mol@LB@@LB@Position - mRNA 185 -- 195@LB@Position - sRNA 30 -- 39@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 104 |
0.009018 |
0.2778 |
bsu08080 |
acoC |
-12.10 |
0.101314 |
188 -- 194 |
30 -- 36 |
dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system |
|
_____________187_____195\n_____________|_______|\n5'-UGC...AUUAA_______ACACA...GAG-3'\n______________AGGGGGG\n______________||:||||\n______________UCUCCCC\n3'-UUU...GACUA_______AACCC...AUA-5'\n_____________|_______|\n_____________37______29\n |
188 -- 194 |
30 -- 36 |
-13.004 kcal/mol |
0.767034 kcal/mol |
0.133643 kcal/mol |
187 195@LB@ | |@LB@5'-UGC...AUUAA ACACA...GAG-3'@LB@ AGGGGGG@LB@ ||:||||@LB@ UCUCCCC@LB@3'-UUU...GACUA AACCC...AUA-5'@LB@ | |@LB@ 37 29@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -13.004 kcal/mol@LB@Unfolding Energy - mRNA 0.767034 kcal/mol@LB@Unfolding Energy - sRNA 0.133643 kcal/mol@LB@@LB@Position - mRNA 188 -- 194@LB@Position - sRNA 30 -- 36@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 61 |
0.003607 |
0.1972 |
bsu06860 |
yezE |
-12.02 |
0.104394 |
226 -- 262 |
26 -- 52 |
TetR family transcriptional regulator |
|
_____________225___________________________________263\n_____________|_____________________________________|\n5'-AGG...UGAUA___CG____U___UCACAGGGC________UUU____AGAGU...UGC-3'\n______________CGG__CUUG_UCU_________GAUAGAGG___UUGG\n______________|||__||||_|||_________||||||||___||||\n______________GCC__GAAC_AGA_________CUAUCUCC___AACC\n3'-UUU...AAAAA___UA____U____________________CC_____CCUUG...AUA-5'\n_____________|_____________________________________|\n_____________53____________________________________25\n |
249 -- 255 |
32 -- 38 |
-24.4528 kcal/mol |
11.4473 kcal/mol |
0.980817 kcal/mol |
225 263@LB@ | |@LB@5'-AGG...UGAUA CG U UCACAGGGC UUU AGAGU...UGC-3'@LB@ CGG CUUG UCU GAUAGAGG UUGG@LB@ ||| |||| ||| |||||||| ||||@LB@ GCC GAAC AGA CUAUCUCC AACC@LB@3'-UUU...AAAAA UA U CC CCUUG...AUA-5'@LB@ | |@LB@ 53 25@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -24.4528 kcal/mol@LB@Unfolding Energy - mRNA 11.4473 kcal/mol@LB@Unfolding Energy - sRNA 0.980817 kcal/mol@LB@@LB@Position - mRNA 226 -- 262@LB@Position - sRNA 26 -- 52@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 131 |
0.01151 |
0.2883 |
bsu03110 |
ycgH |
-12.02 |
0.104581 |
161 -- 192 |
27 -- 50 |
transporter |
|
_____________160______________________________193\n_____________|________________________________|\n5'-UUU...GGACA____ACA____AACCUUA____AA________AAUAA...UCG-3'\n______________GAUC___AUCU_______GAUA__AGGGGUUG\n______________||||___||||_______||||__||||||||\n______________CUAG___UAGA_______CUAU__UCCCCAAC\n3'-UUU...AAAGC____AAC_______________C_________CCCUU...AUA-5'\n_____________|________________________________|\n_____________51_______________________________26\n |
186 -- 192 |
27 -- 33 |
-20.341 kcal/mol |
7.34553 kcal/mol |
0.975523 kcal/mol |
160 193@LB@ | |@LB@5'-UUU...GGACA ACA AACCUUA AA AAUAA...UCG-3'@LB@ GAUC AUCU GAUA AGGGGUUG@LB@ |||| |||| |||| ||||||||@LB@ CUAG UAGA CUAU UCCCCAAC@LB@3'-UUU...AAAGC AAC C CCCUU...AUA-5'@LB@ | |@LB@ 51 26@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -20.341 kcal/mol@LB@Unfolding Energy - mRNA 7.34553 kcal/mol@LB@Unfolding Energy - sRNA 0.975523 kcal/mol@LB@@LB@Position - mRNA 161 -- 192@LB@Position - sRNA 27 -- 50@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 83 |
0.006595 |
0.2588 |
bsu17210 |
pksN |
-11.93 |
0.108023 |
61 -- 115 |
29 -- 70 |
polyketide synthase PksN |
|
_____________60_______________________________________________________116\n_____________|________________________________________________________|\n5'-AGC...CAAGA____________GAAA__________AA__G_G__CAAAACAUC____A____A__AAAUC...UAU-3'\n______________GGUGGCGCUAGG_____UUGGAUUUU__GA_U_UG_________AUAG_AGGG_GU\n______________|||:||||:|:|_____|:||||:||__||_|_||_________||||_||||_||\n______________CCAUCGCGGUUC_____AGCCUAGAA__CU_A_AC_________UAUC_UCCC_CA\n3'-UUU...CGCCC____________AAAAA_______________G_______________________ACCCC...AUA-5'\n_____________|________________________________________________________|\n_____________71_______________________________________________________28\n |
79 -- 85 |
45 -- 51 |
-37.7722 kcal/mol |
10.06 kcal/mol |
15.7778 kcal/mol |
60 116@LB@ | |@LB@5'-AGC...CAAGA GAAA AA G G CAAAACAUC A A AAAUC...UAU-3'@LB@ GGUGGCGCUAGG UUGGAUUUU GA U UG AUAG AGGG GU@LB@ |||:||||:|:| |:||||:|| || | || |||| |||| ||@LB@ CCAUCGCGGUUC AGCCUAGAA CU A AC UAUC UCCC CA@LB@3'-UUU...CGCCC AAAAA G ACCCC...AUA-5'@LB@ | |@LB@ 71 28@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -37.7722 kcal/mol@LB@Unfolding Energy - mRNA 10.06 kcal/mol@LB@Unfolding Energy - sRNA 15.7778 kcal/mol@LB@@LB@Position - mRNA 61 -- 115@LB@Position - sRNA 29 -- 70@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 64 |
0.004032 |
0.2071 |
bsu23050 |
fmnP |
-11.92 |
0.108419 |
30 -- 48 |
32 -- 51 |
riboflavin transporter FmnP |
|
_____________29___________________49\n_____________|____________________|\n5'-GUG...AGUCU____GG___GAA________UUCAU...UAA-3'\n______________GGAU___GA___GAUGGAGG\n______________||||___||___|||:||||\n______________CCUA___CU___CUAUCUCC\n3'-UUU...AAAAG____GAA__AGA________CCAAC...AUA-5'\n_____________|____________________|\n_____________52___________________31\n |
42 -- 48 |
32 -- 38 |
-18.1391 kcal/mol |
5.24431 kcal/mol |
0.97021 kcal/mol |
29 49@LB@ | |@LB@5'-GUG...AGUCU GG GAA UUCAU...UAA-3'@LB@ GGAU GA GAUGGAGG@LB@ |||| || |||:||||@LB@ CCUA CU CUAUCUCC@LB@3'-UUU...AAAAG GAA AGA CCAAC...AUA-5'@LB@ | |@LB@ 52 31@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -18.1391 kcal/mol@LB@Unfolding Energy - mRNA 5.24431 kcal/mol@LB@Unfolding Energy - sRNA 0.97021 kcal/mol@LB@@LB@Position - mRNA 30 -- 48@LB@Position - sRNA 32 -- 51@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 78 |
0.005707 |
0.2441 |
bsu18040 |
yneP |
-11.92 |
0.108570 |
96 -- 119 |
24 -- 45 |
acyl-CoA thioesterase |
|
_____________95_______________________120\n_____________|________________________|\n5'-UUG...CUUUC_________UAU__UAAAA_____CUAAA...AAA-3'\n______________UGAUUUGAU___GG_____UGGGG\n______________||||:||||___||_____|||||\n______________ACUAGACUA___CC_____ACCCC\n3'-UUU...CUAGA_________UCU__CCA_______UUGUC...AUA-5'\n_____________|________________________|\n_____________46_______________________23\n |
98 -- 104 |
37 -- 43 |
-18.893 kcal/mol |
5.99443 kcal/mol |
0.977634 kcal/mol |
95 120@LB@ | |@LB@5'-UUG...CUUUC UAU UAAAA CUAAA...AAA-3'@LB@ UGAUUUGAU GG UGGGG@LB@ ||||:|||| || |||||@LB@ ACUAGACUA CC ACCCC@LB@3'-UUU...CUAGA UCU CCA UUGUC...AUA-5'@LB@ | |@LB@ 46 23@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -18.893 kcal/mol@LB@Unfolding Energy - mRNA 5.99443 kcal/mol@LB@Unfolding Energy - sRNA 0.977634 kcal/mol@LB@@LB@Position - mRNA 96 -- 119@LB@Position - sRNA 24 -- 45@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 65 |
0.004149 |
0.2071 |
bsu25230 |
yqxD |
-11.91 |
0.108824 |
196 -- 217 |
21 -- 43 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 9387153 |
|
_____________195_____________________218\n_____________|_______________________|\n5'-ACA...CAGGA____A________A____A____UACUC...CAU-3'\n______________GUUU_AUGGAGGG__UGG_GAAU\n______________:|:|_||:|||||__|||_|||:\n______________UAGA_UAUCUCCC__ACC_CUUG\n3'-UUU...AGAAC____C________CA___C____UCUCU...AUA-5'\n_____________|_______________________|\n_____________44______________________20\n |
202 -- 208 |
31 -- 37 |
-19.0868 kcal/mol |
4.40975 kcal/mol |
2.76238 kcal/mol |
195 218@LB@ | |@LB@5'-ACA...CAGGA A A A UACUC...CAU-3'@LB@ GUUU AUGGAGGG UGG GAAU@LB@ :|:| ||:||||| ||| |||:@LB@ UAGA UAUCUCCC ACC CUUG@LB@3'-UUU...AGAAC C CA C UCUCU...AUA-5'@LB@ | |@LB@ 44 20@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -19.0868 kcal/mol@LB@Unfolding Energy - mRNA 4.40975 kcal/mol@LB@Unfolding Energy - sRNA 2.76238 kcal/mol@LB@@LB@Position - mRNA 196 -- 217@LB@Position - sRNA 21 -- 43@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 31 -- 37@LB@ |
