| 128 |
0.01397 |
0.3627 |
b1656 |
sodB |
-9.64 |
0.214388 |
197 -- 205 |
38 -- 46 |
superoxide dismutase Fe |
|
_____________196_______206\n_____________|_________|\n5'-UCU...AGAGU_________AUUCG...AGA-3'\n______________AGCAAUGUC\n______________|||||||||\n______________UCGUUACAG\n3'-UUU...UACAC_________CACGA...GCG-5'\n_____________|_________|\n_____________47________37\n |
199 -- 205 |
38 -- 44 |
-13.5738 kcal/mol |
2.78264 kcal/mol |
1.15511 kcal/mol |
196 206@LB@ | |@LB@5'-UCU...AGAGU AUUCG...AGA-3'@LB@ AGCAAUGUC@LB@ |||||||||@LB@ UCGUUACAG@LB@3'-UUU...UACAC CACGA...GCG-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -9.64 kcal/mol@LB@Hybridization Energy -13.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.78264 kcal/mol@LB@Unfolding Energy - sRNA 1.15511 kcal/mol@LB@@LB@Position - mRNA 197 -- 205@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 142 |
0.01677 |
0.3964 |
b3208 |
mtgA |
-9.50 |
0.224857 |
30 -- 43 |
54 -- 67 |
biosynthetic peptidoglycan transglycosylase |
|
_____________29_____________44\n_____________|______________|\n5'-UUG...ACCGC__A___________AGAUG...UGU-3'\n______________AG_AGUGCUGGAAG\n______________||_|:|:|||||||\n______________UC_UUAUGACCUUC\n3'-UUU...CCGAU__A___________GUUAC...GCG-5'\n_____________|______________|\n_____________68_____________53\n |
37 -- 43 |
54 -- 60 |
-16.1342 kcal/mol |
3.92242 kcal/mol |
2.71077 kcal/mol |
29 44@LB@ | |@LB@5'-UUG...ACCGC A AGAUG...UGU-3'@LB@ AG AGUGCUGGAAG@LB@ || |:|:|||||||@LB@ UC UUAUGACCUUC@LB@3'-UUU...CCGAU A GUUAC...GCG-5'@LB@ | |@LB@ 68 53@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -16.1342 kcal/mol@LB@Unfolding Energy - mRNA 3.92242 kcal/mol@LB@Unfolding Energy - sRNA 2.71077 kcal/mol@LB@@LB@Position - mRNA 30 -- 43@LB@Position - sRNA 54 -- 67@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 155 |
0.01913 |
0.4072 |
b2022 |
hisB |
-9.38 |
0.234588 |
182 -- 245 |
3 -- 62 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________181__________________________________________________________________246\n_____________|____________________________________________________________________|\n5'-CAG...CGCCU___G__C_______GUU__A_____CAGAA___AU_____UA____GA______U__AAC________AGCGA...AAC-3'\n______________UAC_UG_GGAGCAA___UG_UGAGU______GU__CUUUU____UC__UCGCGA_GG____CCUGAUU\n______________|||_||_|:|||||___||_||||:______||__||||:____||__:|||||_||____||||||:\n______________AUG_AC_CUUCGUU___AC_ACUCG______CA__GAAAG____AG__GGCGCU_CC____GGACUAG\n3'-UUU...UCAUU_________________________UUACAG__C______UCCA__A_______C__AGAA_______CG-5'\n_____________|____________________________________________________________________|\n_____________63___________________________________________________________________2\n |
239 -- 245 |
3 -- 9 |
-38.4245 kcal/mol |
14.9226 kcal/mol |
14.1216 kcal/mol |
181 246@LB@ | |@LB@5'-CAG...CGCCU G C GUU A CAGAA AU UA GA U AAC AGCGA...AAC-3'@LB@ UAC UG GGAGCAA UG UGAGU GU CUUUU UC UCGCGA GG CCUGAUU@LB@ ||| || |:||||| || ||||: || ||||: || :||||| || ||||||:@LB@ AUG AC CUUCGUU AC ACUCG CA GAAAG AG GGCGCU CC GGACUAG@LB@3'-UUU...UCAUU UUACAG C UCCA A C AGAA CG-5'@LB@ | |@LB@ 63 2@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -38.4245 kcal/mol@LB@Unfolding Energy - mRNA 14.9226 kcal/mol@LB@Unfolding Energy - sRNA 14.1216 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 3 -- 62@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 196 |
0.02499 |
0.4226 |
b3098 |
yqjD |
-9.33 |
0.238834 |
67 -- 86 |
37 -- 57 |
membrane-anchored ribosome-binding protein |
|
_____________66____________________87\n_____________|_____________________|\n5'-UCA...GAGGC_______AAA________C__AUAAG...AAG-3'\n______________GAAGCAA____GGCGAUG_CG\n______________|||||||____:||:|||_||\n______________CUUCGUU____UCGUUAC_GC\n3'-UUU...AUGAC_______ACAC_______A__ACGAA...GCG-5'\n_____________|_____________________|\n_____________58____________________36\n |
77 -- 83 |
40 -- 46 |
-18.4137 kcal/mol |
5.85817 kcal/mol |
3.2267 kcal/mol |
66 87@LB@ | |@LB@5'-UCA...GAGGC AAA C AUAAG...AAG-3'@LB@ GAAGCAA GGCGAUG CG@LB@ ||||||| :||:||| ||@LB@ CUUCGUU UCGUUAC GC@LB@3'-UUU...AUGAC ACAC A ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -18.4137 kcal/mol@LB@Unfolding Energy - mRNA 5.85817 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 67 -- 86@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 98 |
0.01017 |
0.3393 |
b1234 |
rssA |
-9.29 |
0.241768 |
243 -- 258 |
1 -- 20 |
putative patatin-like family phospholipase |
|
_____________242___________________259\n_____________|_____________________|\n5'-GAU...GCGCG_____A_______________AUAUU...AAA-3'\n______________GCGAG_GGU_____UGGUCGC\n______________|||||_|||_____||:||||\n______________CGCUC_CCA_____ACUAGCG\n3'-UUU...AGAGG_________GAAGG_______-5'\n_____________|____________________|\n_____________21___________________1\n |
252 -- 258 |
1 -- 7 |
-21.3571 kcal/mol |
5.88093 kcal/mol |
6.18231 kcal/mol |
242 259@LB@ | |@LB@5'-GAU...GCGCG A AUAUU...AAA-3'@LB@ GCGAG GGU UGGUCGC@LB@ ||||| ||| ||:||||@LB@ CGCUC CCA ACUAGCG@LB@3'-UUU...AGAGG GAAGG -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -21.3571 kcal/mol@LB@Unfolding Energy - mRNA 5.88093 kcal/mol@LB@Unfolding Energy - sRNA 6.18231 kcal/mol@LB@@LB@Position - mRNA 243 -- 258@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 72 |
0.00645 |
0.301 |
b2125 |
yehT |
-9.24 |
0.246554 |
1 -- 8 |
14 -- 21 |
putative response regulator in two-component system withYehU |
|
______________1_______9\n______________|_______|\n___________5'-________GCAAC...GUU-3'\n______________CGUGAGGG\n______________||:|||||\n______________GCGCUCCC\n3'-UUU...AAGAG________AGAAG...GCG-5'\n_____________|________|\n_____________22_______13\n |
2 -- 8 |
14 -- 20 |
-15.432 kcal/mol |
1.85513 kcal/mol |
4.33947 kcal/mol |
1 9@LB@ | |@LB@ 5'- GCAAC...GUU-3'@LB@ CGUGAGGG@LB@ ||:|||||@LB@ GCGCUCCC@LB@3'-UUU...AAGAG AGAAG...GCG-5'@LB@ | |@LB@ 22 13@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -15.432 kcal/mol@LB@Unfolding Energy - mRNA 1.85513 kcal/mol@LB@Unfolding Energy - sRNA 4.33947 kcal/mol@LB@@LB@Position - mRNA 1 -- 8@LB@Position - sRNA 14 -- 21@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 99 |
0.01025 |
0.3393 |
b1887 |
cheW |
-9.13 |
0.255901 |
16 -- 66 |
38 -- 87 |
purine-binding chemotaxis protein |
|
_____________15___________________________________________________67\n_____________|____________________________________________________|\n5'-GUG...UAAUU_____A____A___UG_______AAACC____A______CUAUC____A___CCCGG...UCC-3'\n______________GGUCA_CACC_GGU__UGGUUAA______UUG_AAGUAA_____GCAA_GUC\n______________:|:||_||||_||:__|||:|||______:||_|||:||_____||||_|||\n______________UCGGU_GUGG_CCG__ACCGAUU______GAC_UUCGUU_____CGUU_CAG\n________3'-UUU_____C____G____________CAUUAU___C______ACACU____A___CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________88___________________________________________________37\n |
32 -- 38 |
67 -- 73 |
-34.6295 kcal/mol |
10.5892 kcal/mol |
14.9106 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...UAAUU A A UG AAACC A CUAUC A CCCGG...UCC-3'@LB@ GGUCA CACC GGU UGGUUAA UUG AAGUAA GCAA GUC@LB@ :|:|| |||| ||: |||:||| :|| |||:|| |||| |||@LB@ UCGGU GUGG CCG ACCGAUU GAC UUCGUU CGUU CAG@LB@ 3'-UUU C G CAUUAU C ACACU A CACGA...GCG-5'@LB@ | |@LB@ 88 37@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -34.6295 kcal/mol@LB@Unfolding Energy - mRNA 10.5892 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 38 -- 87@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 175 |
0.02121 |
0.4072 |
b4592 |
cbdX |
-9.01 |
0.266875 |
56 -- 82 |
33 -- 61 |
putative cytochrome bd-II oxidase subunit |
|
_____________55______________________________83\n_____________|_______________________________|\n5'-GCG...CUGAC__________UU____U______________GAUAU...CGU-3'\n______________GCUG__AGCA__AUGU_GGUAA__UCGUGCU\n______________:|||__||||__||||_:|:||__|||||||\n______________UGAC__UCGU__UACA_UCGUU__AGCACGA\n3'-UUU...CAUUA____CU__________C_____AC_______AAGUC...GCG-5'\n_____________|_______________________________|\n_____________62______________________________32\n |
76 -- 82 |
33 -- 39 |
-24.6928 kcal/mol |
8.91736 kcal/mol |
6.76812 kcal/mol |
55 83@LB@ | |@LB@5'-GCG...CUGAC UU U GAUAU...CGU-3'@LB@ GCUG AGCA AUGU GGUAA UCGUGCU@LB@ :||| |||| |||| :|:|| |||||||@LB@ UGAC UCGU UACA UCGUU AGCACGA@LB@3'-UUU...CAUUA CU C AC AAGUC...GCG-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -24.6928 kcal/mol@LB@Unfolding Energy - mRNA 8.91736 kcal/mol@LB@Unfolding Energy - sRNA 6.76812 kcal/mol@LB@@LB@Position - mRNA 56 -- 82@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 147 |
0.01756 |
0.3998 |
b2204 |
napH |
-8.83 |
0.283291 |
175 -- 212 |
36 -- 85 |
ferredoxin-type protein |
|
_____________174________________________________________________213\n_____________|__________________________________________________|\n5'-CAC...CAUUA_______________________GG___________________A_____AAACG...UCU-3'\n______________CC_GC_UUCGGCUGGCUG___GA____GGAA_CAAUG___GCAA__UCGU\n______________||_||_::|||||||||:___:|____||||_|||||___||||__||||\n______________GG_CG_GGGCCGACCGAU___UU____CCUU_GUUAC___CGUU__AGCA\n______3'-UUUUC__U__U____________UCA__AUGA____C_____ACU____AC____CGAAA...GCG-5'\n_____________|__________________________________________________|\n_____________86_________________________________________________35\n |
183 -- 189 |
69 -- 75 |
-37.9033 kcal/mol |
14.1609 kcal/mol |
14.9108 kcal/mol |
174 213@LB@ | |@LB@5'-CAC...CAUUA GG A AAACG...UCU-3'@LB@ CC GC UUCGGCUGGCUG GA GGAA CAAUG GCAA UCGU@LB@ || || ::|||||||||: :| |||| ||||| |||| ||||@LB@ GG CG GGGCCGACCGAU UU CCUU GUUAC CGUU AGCA@LB@ 3'-UUUUC U U UCA AUGA C ACU AC CGAAA...GCG-5'@LB@ | |@LB@ 86 35@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -37.9033 kcal/mol@LB@Unfolding Energy - mRNA 14.1609 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 175 -- 212@LB@Position - sRNA 36 -- 85@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 176 |
0.02184 |
0.4113 |
b0153 |
fhuB |
-8.75 |
0.291577 |
190 -- 208 |
42 -- 58 |
iron(3+)-hydroxamate import ABC transporter permease |
|
_____________189_________________209\n_____________|___________________|\n5'-UAU...CCAUC________AGC________ACGAA...CGC-3'\n______________GGAGGUAA___GUGAGUAA\n______________|||:|:||___|||||:||\n______________CCUUCGUU___CACUCGUU\n3'-UUU...UAUGA________A__________ACAGC...GCG-5'\n_____________|___________________|\n_____________59__________________41\n |
202 -- 208 |
42 -- 48 |
-20.4106 kcal/mol |
8.45448 kcal/mol |
3.2101 kcal/mol |
189 209@LB@ | |@LB@5'-UAU...CCAUC AGC ACGAA...CGC-3'@LB@ GGAGGUAA GUGAGUAA@LB@ |||:|:|| |||||:||@LB@ CCUUCGUU CACUCGUU@LB@3'-UUU...UAUGA A ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.4106 kcal/mol@LB@Unfolding Energy - mRNA 8.45448 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 190 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
