196 |
0.04084 |
0.6177 |
b3137 |
kbaY |
-7.51 |
0.129887 |
187 -- 200 |
37 -- 51 |
tagatose 6-phosphate aldolase 1 kbaY subunit |
b2096 |
_____________186_____________201\n_____________|_______________|\n5'-CAC...GGCAU_______UCG_____AUGAG...CGA-3'\n______________AAGAGGA____CAUU\n______________|||||||____||||\n______________UUCUCCU____GUAA\n3'-UUU...GCAGU_______UAAA____AAAAA...ACA-5'\n_____________|_______________|\n_____________52______________36\n |
187 -- 193 |
45 -- 51 |
-11.4071 kcal/mol |
2.82588 kcal/mol |
1.07049 kcal/mol |
186 201@LB@ | |@LB@5'-CAC...GGCAU UCG AUGAG...CGA-3'@LB@ AAGAGGA CAUU@LB@ ||||||| ||||@LB@ UUCUCCU GUAA@LB@3'-UUU...GCAGU UAAA AAAAA...ACA-5'@LB@ | |@LB@ 52 36@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -11.4071 kcal/mol@LB@Unfolding Energy - mRNA 2.82588 kcal/mol@LB@Unfolding Energy - sRNA 1.07049 kcal/mol@LB@@LB@Position - mRNA 187 -- 200@LB@Position - sRNA 37 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 45 -- 51@LB@ |
147 |
0.02922 |
0.6177 |
b3836 |
tatA |
-6.91 |
0.169904 |
186 -- 195 |
44 -- 53 |
TatABCE protein translocation system subunit |
|
_____________185________196\n_____________|__________|\n5'-CUA...UCUAC__C_______CAUGU...GUG-3'\n______________CA_AGAGGAA\n______________||_|||||||\n______________GU_UCUCCUU\n3'-UUU...GGGCA__U_______AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
189 -- 195 |
44 -- 50 |
-10.6779 kcal/mol |
2.84312 kcal/mol |
0.927997 kcal/mol |
185 196@LB@ | |@LB@5'-CUA...UCUAC C CAUGU...GUG-3'@LB@ CA AGAGGAA@LB@ || |||||||@LB@ GU UCUCCUU@LB@3'-UUU...GGGCA U AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -6.91 kcal/mol@LB@Hybridization Energy -10.6779 kcal/mol@LB@Unfolding Energy - mRNA 2.84312 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
154 |
0.03071 |
0.6177 |
b0368 |
tauD |
-7.18 |
0.150437 |
69 -- 85 |
40 -- 55 |
taurine dioxygenase 2-oxoglutarate-dependent |
|
_____________68________________86\n_____________|_________________|\n5'-GUG...GUUCA_____C___U_______UCGCA...AAC-3'\n______________GUCAG_GGG_GAAUUUC\n______________||||:_|:|_|||||||\n______________CAGUU_CUC_CUUAAAG\n3'-UUU...CCGGG_____U___________UAAAA...ACA-5'\n_____________|_________________|\n_____________56________________39\n |
79 -- 85 |
40 -- 46 |
-16.0696 kcal/mol |
7.86965 kcal/mol |
1.01784 kcal/mol |
68 86@LB@ | |@LB@5'-GUG...GUUCA C U UCGCA...AAC-3'@LB@ GUCAG GGG GAAUUUC@LB@ ||||: |:| |||||||@LB@ CAGUU CUC CUUAAAG@LB@3'-UUU...CCGGG U UAAAA...ACA-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -7.18 kcal/mol@LB@Hybridization Energy -16.0696 kcal/mol@LB@Unfolding Energy - mRNA 7.86965 kcal/mol@LB@Unfolding Energy - sRNA 1.01784 kcal/mol@LB@@LB@Position - mRNA 69 -- 85@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 40 -- 46@LB@ |
16 |
0.003381 |
0.593 |
b0956 |
matP |
-12.11 |
0.015217 |
269 -- 280 |
42 -- 53 |
Ter macrodomain organizer matS-binding protein |
|
_____________268__________281\n_____________|____________|\n5'-UUU...CAUCG____________AAUCA...AAG-3'\n______________CGAAGGGGAGUU\n______________|:|||:|||:||\n______________GUUUCUCCUUAA\n3'-UUU...GGGCA____________AGUAA...ACA-5'\n_____________|____________|\n_____________54___________41\n |
274 -- 280 |
42 -- 48 |
-15.3716 kcal/mol |
2.33274 kcal/mol |
0.933904 kcal/mol |
268 281@LB@ | |@LB@5'-UUU...CAUCG AAUCA...AAG-3'@LB@ CGAAGGGGAGUU@LB@ |:|||:|||:||@LB@ GUUUCUCCUUAA@LB@3'-UUU...GGGCA AGUAA...ACA-5'@LB@ | |@LB@ 54 41@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -15.3716 kcal/mol@LB@Unfolding Energy - mRNA 2.33274 kcal/mol@LB@Unfolding Energy - sRNA 0.933904 kcal/mol@LB@@LB@Position - mRNA 269 -- 280@LB@Position - sRNA 42 -- 53@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 42 -- 48@LB@ |
125 |
0.02442 |
0.6177 |
b3181 |
greA |
-6.11 |
0.239901 |
243 -- 260 |
40 -- 56 |
transcript cleavage factor |
|
_____________242_________________261\n_____________|___________________|\n5'-CGC...AAUUA__________CU_______CUGAA...UCG-3'\n______________CG_CGAAGAG__GGAUUUU\n______________||_|:|||||__|:||||:\n______________GC_GUUUCUC__CUUAAAG\n3'-UUU...ACCGG__A________________UAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________39\n |
245 -- 251 |
47 -- 53 |
-12.1125 kcal/mol |
4.98158 kcal/mol |
1.02557 kcal/mol |
242 261@LB@ | |@LB@5'-CGC...AAUUA CU CUGAA...UCG-3'@LB@ CG CGAAGAG GGAUUUU@LB@ || |:||||| |:||||:@LB@ GC GUUUCUC CUUAAAG@LB@3'-UUU...ACCGG A UAAAA...ACA-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -6.11 kcal/mol@LB@Hybridization Energy -12.1125 kcal/mol@LB@Unfolding Energy - mRNA 4.98158 kcal/mol@LB@Unfolding Energy - sRNA 1.02557 kcal/mol@LB@@LB@Position - mRNA 243 -- 260@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 47 -- 53@LB@ |
12 |
0.002398 |
0.593 |
b1114 |
mfd |
-13.52 |
0.007793 |
210 -- 241 |
45 -- 73 |
transcription-repair coupling factor |
|
_____________209______________________________242\n_____________|________________________________|\n5'-UUC...CUGAA____________ACGCU___________C___UGAGC...AAA-3'\n______________CAAUAUCGUUAU_____GCCCGUCAAAG_GGG\n______________||||||||:|||_____|||||||||||_||:\n______________GUUAUAGCGAUA_____CGGGCAGUUUC_CCU\n3'-UUU...UACCG____________AC______________U___UAAAG...ACA-5'\n_____________|________________________________|\n_____________74_______________________________44\n |
231 -- 237 |
49 -- 55 |
-37.142 kcal/mol |
12.2919 kcal/mol |
11.3343 kcal/mol |
209 242@LB@ | |@LB@5'-UUC...CUGAA ACGCU C UGAGC...AAA-3'@LB@ CAAUAUCGUUAU GCCCGUCAAAG GGG@LB@ ||||||||:||| ||||||||||| ||:@LB@ GUUAUAGCGAUA CGGGCAGUUUC CCU@LB@3'-UUU...UACCG AC U UAAAG...ACA-5'@LB@ | |@LB@ 74 44@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -37.142 kcal/mol@LB@Unfolding Energy - mRNA 12.2919 kcal/mol@LB@Unfolding Energy - sRNA 11.3343 kcal/mol@LB@@LB@Position - mRNA 210 -- 241@LB@Position - sRNA 45 -- 73@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 49 -- 55@LB@ |
31 |
0.005902 |
0.6127 |
b1951 |
rcsA |
-8.09 |
0.100100 |
163 -- 178 |
37 -- 51 |
transcriptional regulator of colanic acid capsular biosynthesis |
|
_____________162______________179\n_____________|________________|\n5'-GUU...CAGGU__________A_____ACGCA...UUG-3'\n______________AAGGGGAAUU_UCGUU\n______________|||:||||||_||:||\n______________UUCUCCUUAA_AGUAA\n3'-UUU...GCAGU________________AAAAA...ACA-5'\n_____________|________________|\n_____________52_______________36\n |
166 -- 172 |
42 -- 48 |
-14.3412 kcal/mol |
5.18535 kcal/mol |
1.07049 kcal/mol |
162 179@LB@ | |@LB@5'-GUU...CAGGU A ACGCA...UUG-3'@LB@ AAGGGGAAUU UCGUU@LB@ |||:|||||| ||:||@LB@ UUCUCCUUAA AGUAA@LB@3'-UUU...GCAGU AAAAA...ACA-5'@LB@ | |@LB@ 52 36@LB@@LB@@LB@Energy -8.09 kcal/mol@LB@Hybridization Energy -14.3412 kcal/mol@LB@Unfolding Energy - mRNA 5.18535 kcal/mol@LB@Unfolding Energy - sRNA 1.07049 kcal/mol@LB@@LB@Position - mRNA 163 -- 178@LB@Position - sRNA 37 -- 51@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
71 |
0.01472 |
0.6177 |
b0846 |
rcdA |
-10.28 |
0.035999 |
187 -- 195 |
44 -- 52 |
transcriptional regulator of csgD and ybiJI; autoregulator |
|
_____________186_______196\n_____________|_________|\n5'-GCG...UGCAG_________AUGAC...AAA-3'\n______________AGAGAGGAA\n______________|:|||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
189 -- 195 |
44 -- 50 |
-11.6116 kcal/mol |
0.46711 kcal/mol |
0.860683 kcal/mol |
186 196@LB@ | |@LB@5'-GCG...UGCAG AUGAC...AAA-3'@LB@ AGAGAGGAA@LB@ |:|||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -11.6116 kcal/mol@LB@Unfolding Energy - mRNA 0.46711 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 187 -- 195@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
36 |
0.007218 |
0.6129 |
b3938 |
metJ |
-9.22 |
0.059290 |
181 -- 189 |
45 -- 53 |
transcriptional repressor S-adenosylmethionine-binding |
|
_____________180_______190\n_____________|_________|\n5'-UCU...AUUGA_________UUAAG...UGU-3'\n______________CGAAGAGGA\n______________|:|||||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
183 -- 189 |
45 -- 51 |
-12.478 kcal/mol |
2.34125 kcal/mol |
0.917553 kcal/mol |
180 190@LB@ | |@LB@5'-UCU...AUUGA UUAAG...UGU-3'@LB@ CGAAGAGGA@LB@ |:|||||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -12.478 kcal/mol@LB@Unfolding Energy - mRNA 2.34125 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 181 -- 189@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 45 -- 51@LB@ |
167 |
0.03387 |
0.6177 |
b3980 |
tufB |
-7.70 |
0.119070 |
183 -- 194 |
44 -- 55 |
translation elongation factor EF-Tu 2 |
b3339 |
_____________182__________195\n_____________|____________|\n5'-UCC...UCCGU___UU_______CAAUC...CUA-3'\n______________GUC__AGAGGGA\n______________|||__|||||:|\n______________CAG__UCUCCUU\n3'-UUU...CCGGG___UU_______AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
188 -- 194 |
44 -- 50 |
-14.3886 kcal/mol |
5.74361 kcal/mol |
0.941432 kcal/mol |
182 195@LB@ | |@LB@5'-UCC...UCCGU UU CAAUC...CUA-3'@LB@ GUC AGAGGGA@LB@ ||| |||||:|@LB@ CAG UCUCCUU@LB@3'-UUU...CCGGG UU AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -14.3886 kcal/mol@LB@Unfolding Energy - mRNA 5.74361 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 183 -- 194@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |