| 46 |
0.009202 |
0.6129 |
b0183 |
rnhB |
-8.44 |
0.085048 |
25 -- 32 |
48 -- 55 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________24_______33\n_____________|________|\n5'-AAU...AGUUA________AUUAU...UCC-3'\n______________GUCAAAGA\n______________||||||||\n______________CAGUUUCU\n3'-UUU...CCGGG________CCUUA...ACA-5'\n_____________|________|\n_____________56_______47\n |
26 -- 32 |
48 -- 54 |
-9.30452 kcal/mol |
0.544993 kcal/mol |
0.318869 kcal/mol |
24 33@LB@ | |@LB@5'-AAU...AGUUA AUUAU...UCC-3'@LB@ GUCAAAGA@LB@ ||||||||@LB@ CAGUUUCU@LB@3'-UUU...CCGGG CCUUA...ACA-5'@LB@ | |@LB@ 56 47@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -9.30452 kcal/mol@LB@Unfolding Energy - mRNA 0.544993 kcal/mol@LB@Unfolding Energy - sRNA 0.318869 kcal/mol@LB@@LB@Position - mRNA 25 -- 32@LB@Position - sRNA 48 -- 55@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 190 |
0.03948 |
0.6177 |
b2914 |
rpiA |
-5.25 |
0.339968 |
76 -- 83 |
45 -- 52 |
ribose 5-phosphate isomerase constitutive |
|
_____________75_______84\n_____________|________|\n5'-GAA...GGGCG________UGCCU...CAC-3'\n______________AAAGGGGA\n______________||||:|||\n______________UUUCUCCU\n3'-UUU...GGCAG________UAAAG...ACA-5'\n_____________|________|\n_____________53_______44\n |
77 -- 83 |
45 -- 51 |
-8.77639 kcal/mol |
2.67801 kcal/mol |
0.850469 kcal/mol |
75 84@LB@ | |@LB@5'-GAA...GGGCG UGCCU...CAC-3'@LB@ AAAGGGGA@LB@ ||||:|||@LB@ UUUCUCCU@LB@3'-UUU...GGCAG UAAAG...ACA-5'@LB@ | |@LB@ 53 44@LB@@LB@@LB@Energy -5.25 kcal/mol@LB@Hybridization Energy -8.77639 kcal/mol@LB@Unfolding Energy - mRNA 2.67801 kcal/mol@LB@Unfolding Energy - sRNA 0.850469 kcal/mol@LB@@LB@Position - mRNA 76 -- 83@LB@Position - sRNA 45 -- 52@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 85 |
0.01786 |
0.6177 |
b1427 |
rimL |
-14.01 |
0.006161 |
123 -- 133 |
46 -- 56 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________122_________134\n_____________|___________|\n5'-GAU...GAGAG___________UGUAA...CCU-3'\n______________CGUCAAAGAGG\n______________|||||||||||\n______________GCAGUUUCUCC\n3'-UUU...ACCGG___________UUAAA...ACA-5'\n_____________|___________|\n_____________57__________45\n |
127 -- 133 |
46 -- 52 |
-17.3934 kcal/mol |
2.45026 kcal/mol |
0.93204 kcal/mol |
122 134@LB@ | |@LB@5'-GAU...GAGAG UGUAA...CCU-3'@LB@ CGUCAAAGAGG@LB@ |||||||||||@LB@ GCAGUUUCUCC@LB@3'-UUU...ACCGG UUAAA...ACA-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -17.3934 kcal/mol@LB@Unfolding Energy - mRNA 2.45026 kcal/mol@LB@Unfolding Energy - sRNA 0.93204 kcal/mol@LB@@LB@Position - mRNA 123 -- 133@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 132 |
0.02588 |
0.6177 |
b3180 |
yhbY |
-5.98 |
0.252347 |
290 -- 297 |
46 -- 53 |
RNA binding protein associated with pre-50S ribosomal subunits |
|
_____________289______298\n_____________|________|\n5'-CUG...UUGAC________UGC-3'\n______________CGAAGGGG\n______________|:|||:||\n______________GUUUCUCC\n3'-UUU...GGGCA________UUAAA...ACA-5'\n_____________|________|\n_____________54_______45\n |
291 -- 297 |
46 -- 52 |
-10.2464 kcal/mol |
3.35117 kcal/mol |
0.910679 kcal/mol |
289 298@LB@ | |@LB@5'-CUG...UUGAC UGC-3'@LB@ CGAAGGGG@LB@ |:|||:||@LB@ GUUUCUCC@LB@3'-UUU...GGGCA UUAAA...ACA-5'@LB@ | |@LB@ 54 45@LB@@LB@@LB@Energy -5.98 kcal/mol@LB@Hybridization Energy -10.2464 kcal/mol@LB@Unfolding Energy - mRNA 3.35117 kcal/mol@LB@Unfolding Energy - sRNA 0.910679 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 46 -- 53@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 106 |
0.02162 |
0.6177 |
b1831 |
proQ |
-7.28 |
0.143813 |
159 -- 202 |
38 -- 75 |
RNA chaperone putative ProP translation regulator |
|
_____________158_____________________________________________203\n_____________|_______________________________________________|\n5'-UUA...UUCAU___UG______U________A____CGUUGU__UC___A________GGAAA...CGC-3'\n______________GCC_____CGC_UGUUGGCU_CGUC______AA__AGG_AAUUUCAU\n______________|||_____|||_|:|||||:_||||______||__|||_||||||||\n______________CGG_____GCG_AUAACCGG_GCAG______UU__UCC_UUAAAGUA\n3'-UUU...UUUAC___UUAUA_________________________UC____________AAAAA...ACA-5'\n_____________|_______________________________________________|\n_____________76______________________________________________37\n |
196 -- 202 |
38 -- 44 |
-31.8607 kcal/mol |
10.974 kcal/mol |
13.6034 kcal/mol |
158 203@LB@ | |@LB@5'-UUA...UUCAU UG U A CGUUGU UC A GGAAA...CGC-3'@LB@ GCC CGC UGUUGGCU CGUC AA AGG AAUUUCAU@LB@ ||| ||| |:|||||: |||| || ||| ||||||||@LB@ CGG GCG AUAACCGG GCAG UU UCC UUAAAGUA@LB@3'-UUU...UUUAC UUAUA UC AAAAA...ACA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -7.28 kcal/mol@LB@Hybridization Energy -31.8607 kcal/mol@LB@Unfolding Energy - mRNA 10.974 kcal/mol@LB@Unfolding Energy - sRNA 13.6034 kcal/mol@LB@@LB@Position - mRNA 159 -- 202@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 81 |
0.01751 |
0.6177 |
b2741 |
rpoS |
-9.52 |
0.051528 |
88 -- 101 |
44 -- 56 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________87_____________102\n_____________|______________|\n5'-CGG...AAAUU_____C________AUCCG...AGG-3'\n______________CGUUA_AAGGGGAA\n______________|||:|_|||:||||\n______________GCAGU_UUCUCCUU\n3'-UUU...ACCGG______________AAAGU...ACA-5'\n_____________|______________|\n_____________57_____________43\n |
95 -- 101 |
44 -- 50 |
-13.0318 kcal/mol |
2.56318 kcal/mol |
0.948902 kcal/mol |
87 102@LB@ | |@LB@5'-CGG...AAAUU C AUCCG...AGG-3'@LB@ CGUUA AAGGGGAA@LB@ |||:| |||:||||@LB@ GCAGU UUCUCCUU@LB@3'-UUU...ACCGG AAAGU...ACA-5'@LB@ | |@LB@ 57 43@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -13.0318 kcal/mol@LB@Unfolding Energy - mRNA 2.56318 kcal/mol@LB@Unfolding Energy - sRNA 0.948902 kcal/mol@LB@@LB@Position - mRNA 88 -- 101@LB@Position - sRNA 44 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 95 |
0.01894 |
0.6177 |
b0407 |
yajC |
-8.94 |
0.067585 |
73 -- 105 |
45 -- 79 |
SecYEG protein translocase auxillary subunit |
|
_____________72___________________________________106\n_____________|____________________________________|\n5'-UCU...CGUUU______G___U_A___AA______A___________UAAAU...UUU-3'\n______________GAUGGC_GGU_U_CGC____GGCU__UUGAAGAGGG\n______________:|||||_::|_|_|||____|||:__|::||||||:\n______________UUACCG_UUA_A_GCG____CCGG__AGUUUCUCCU\n______3'-UUUUU______G___U_____AUAA____GC__________UAAAG...ACA-5'\n_____________|____________________________________|\n_____________80___________________________________44\n |
99 -- 105 |
45 -- 51 |
-30.8043 kcal/mol |
8.31146 kcal/mol |
13.5551 kcal/mol |
72 106@LB@ | |@LB@5'-UCU...CGUUU G U A AA A UAAAU...UUU-3'@LB@ GAUGGC GGU U CGC GGCU UUGAAGAGGG@LB@ :||||| ::| | ||| |||: |::||||||:@LB@ UUACCG UUA A GCG CCGG AGUUUCUCCU@LB@ 3'-UUUUU G U AUAA GC UAAAG...ACA-5'@LB@ | |@LB@ 80 44@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -30.8043 kcal/mol@LB@Unfolding Energy - mRNA 8.31146 kcal/mol@LB@Unfolding Energy - sRNA 13.5551 kcal/mol@LB@@LB@Position - mRNA 73 -- 105@LB@Position - sRNA 45 -- 79@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 143 |
0.02773 |
0.6177 |
b0409 |
secF |
-7.84 |
0.111773 |
181 -- 195 |
43 -- 55 |
SecYEG protein translocase auxillary subunit |
|
_____________180_____________196\n_____________|_______________|\n5'-CUU...AAGCU_____UCU_______GCGAU...UGU-3'\n______________GUCAA___GAGGAGU\n______________|||||___|||||:|\n______________CAGUU___CUCCUUA\n3'-UUU...CCGGG_____U_________AAGUA...ACA-5'\n_____________|_______________|\n_____________56______________42\n |
189 -- 195 |
43 -- 49 |
-13.7308 kcal/mol |
4.94116 kcal/mol |
0.946481 kcal/mol |
180 196@LB@ | |@LB@5'-CUU...AAGCU UCU GCGAU...UGU-3'@LB@ GUCAA GAGGAGU@LB@ ||||| |||||:|@LB@ CAGUU CUCCUUA@LB@3'-UUU...CCGGG U AAGUA...ACA-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -13.7308 kcal/mol@LB@Unfolding Energy - mRNA 4.94116 kcal/mol@LB@Unfolding Energy - sRNA 0.946481 kcal/mol@LB@@LB@Position - mRNA 181 -- 195@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 73 |
0.01516 |
0.6177 |
b0619 |
citA |
-15.44 |
0.003129 |
164 -- 175 |
46 -- 57 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________163__________176\n_____________|____________|\n5'-CAU...UACAU____________CUCGG...UCA-3'\n______________CCGUCAAAGAGG\n______________||||||||||||\n______________GGCAGUUUCUCC\n3'-UUU...AACCG____________UUAAA...ACA-5'\n_____________|____________|\n_____________58___________45\n |
169 -- 175 |
46 -- 52 |
-20.3901 kcal/mol |
2.21322 kcal/mol |
2.7365 kcal/mol |
163 176@LB@ | |@LB@5'-CAU...UACAU CUCGG...UCA-3'@LB@ CCGUCAAAGAGG@LB@ ||||||||||||@LB@ GGCAGUUUCUCC@LB@3'-UUU...AACCG UUAAA...ACA-5'@LB@ | |@LB@ 58 45@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -20.3901 kcal/mol@LB@Unfolding Energy - mRNA 2.21322 kcal/mol@LB@Unfolding Energy - sRNA 2.7365 kcal/mol@LB@@LB@Position - mRNA 164 -- 175@LB@Position - sRNA 46 -- 57@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 17 |
0.003407 |
0.593 |
b3607 |
cysE |
-9.56 |
0.050591 |
4 -- 44 |
27 -- 56 |
serine acetyltransferase |
|
_____________3__________________________________________45\n_____________|__________________________________________|\n________5'-CGG_______AUGCCAAUAACC______A_____CAAG_______AUUGC...CGA-3'\n______________CGUUGAA____________GAGGAA_UUUAU_____UAUUAU\n______________|||::||____________||||||_||:||_____||||||\n______________GCAGUUU____________CUCCUU_AAGUA_____AUAAUA\n3'-UUU...ACCGG_________________________A_____AAAAA______AUACG...ACA-5'\n_____________|__________________________________________|\n_____________57_________________________________________26\n |
4 -- 10 |
50 -- 56 |
-14.2001 kcal/mol |
3.44433 kcal/mol |
1.19682 kcal/mol |
3 45@LB@ | |@LB@ 5'-CGG AUGCCAAUAACC A CAAG AUUGC...CGA-3'@LB@ CGUUGAA GAGGAA UUUAU UAUUAU@LB@ |||::|| |||||| ||:|| ||||||@LB@ GCAGUUU CUCCUU AAGUA AUAAUA@LB@3'-UUU...ACCGG A AAAAA AUACG...ACA-5'@LB@ | |@LB@ 57 26@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -14.2001 kcal/mol@LB@Unfolding Energy - mRNA 3.44433 kcal/mol@LB@Unfolding Energy - sRNA 1.19682 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 27 -- 56@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 50 -- 56@LB@ |
