158 |
0.01436 |
0.3008 |
bsu10130 |
hemH |
-12.69 |
0.080628 |
178 -- 227 |
6 -- 44 |
ferrochelatase |
|
_____________177____________________________________________________228\n_____________|______________________________________________________|\n5'-GAG...UAUCA____AUUAA______U__A_________U____AGAAAGAAAAUGG________GUGAU...GAA-3'\n______________GAUC_____AGAGGG_GU_____AACAG_GAGU_____________GGCUUCUC\n______________||||_____||||||_||_____|||||_||||_____________:|||||||\n______________CUAG_____UCUCCC_CA_____UUGUC_CUCA_____________UCGAAGAG\n3'-UUU...UAGAA____ACUA__________ACCCC_____U_________________________AGAUA-5'\n_____________|______________________________________________________|\n_____________45_____________________________________________________5\n |
220 -- 226 |
7 -- 13 |
-32.766 kcal/mol |
10.122 kcal/mol |
9.95356 kcal/mol |
177 228@LB@ | |@LB@5'-GAG...UAUCA AUUAA U A U AGAAAGAAAAUGG GUGAU...GAA-3'@LB@ GAUC AGAGGG GU AACAG GAGU GGCUUCUC@LB@ |||| |||||| || ||||| |||| :|||||||@LB@ CUAG UCUCCC CA UUGUC CUCA UCGAAGAG@LB@3'-UUU...UAGAA ACUA ACCCC U AGAUA-5'@LB@ | |@LB@ 45 5@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -32.766 kcal/mol@LB@Unfolding Energy - mRNA 10.122 kcal/mol@LB@Unfolding Energy - sRNA 9.95356 kcal/mol@LB@@LB@Position - mRNA 178 -- 227@LB@Position - sRNA 6 -- 44@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 7 -- 13@LB@ |
159 |
0.01439 |
0.3008 |
bsu00560 |
spoVT |
-10.85 |
0.160189 |
242 -- 254 |
41 -- 53 |
stage V sporulation protein T |
|
_____________241___________255\n_____________|_____________|\n5'-ACA...UUAGG_______G_____CCUAA...CGC-3'\n______________UCGGGUC_UGAUU\n______________||||:||_||||:\n______________AGCCUAG_ACUAG\n3'-UUU...AAAAA_______A_____ACUAU...AUA-5'\n_____________|_____________|\n_____________54____________40\n |
242 -- 248 |
47 -- 53 |
-14.0147 kcal/mol |
2.18551 kcal/mol |
0.979862 kcal/mol |
241 255@LB@ | |@LB@5'-ACA...UUAGG G CCUAA...CGC-3'@LB@ UCGGGUC UGAUU@LB@ ||||:|| ||||:@LB@ AGCCUAG ACUAG@LB@3'-UUU...AAAAA A ACUAU...AUA-5'@LB@ | |@LB@ 54 40@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -14.0147 kcal/mol@LB@Unfolding Energy - mRNA 2.18551 kcal/mol@LB@Unfolding Energy - sRNA 0.979862 kcal/mol@LB@@LB@Position - mRNA 242 -- 254@LB@Position - sRNA 41 -- 53@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 47 -- 53@LB@ |
160 |
0.01451 |
0.3008 |
bsu30080 |
yteV |
-11.71 |
0.117611 |
279 -- 298 |
34 -- 53 |
sporulation protein cse60 |
|
_____________278__________________299\n_____________|____________________|\n5'-UUU...GGAUA_____GGAGCAG________UA-3'\n______________UCGGA_______CUGAUAGA\n______________|||||_______||||||||\n______________AGCCU_______GACUAUCU\n3'-UUU...AAAAA_____AGAACUA________CCCCA...AUA-5'\n_____________|____________________|\n_____________54___________________33\n |
292 -- 298 |
34 -- 40 |
-18.1644 kcal/mol |
5.47565 kcal/mol |
0.98171 kcal/mol |
278 299@LB@ | |@LB@5'-UUU...GGAUA GGAGCAG UA-3'@LB@ UCGGA CUGAUAGA@LB@ ||||| ||||||||@LB@ AGCCU GACUAUCU@LB@3'-UUU...AAAAA AGAACUA CCCCA...AUA-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -18.1644 kcal/mol@LB@Unfolding Energy - mRNA 5.47565 kcal/mol@LB@Unfolding Energy - sRNA 0.98171 kcal/mol@LB@@LB@Position - mRNA 279 -- 298@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 34 -- 40@LB@ |
161 |
0.01452 |
0.3008 |
bsu04700 |
rsbU |
-15.42 |
0.024826 |
142 -- 163 |
16 -- 38 |
phosphoserine phosphatase RsbU |
|
_____________141_____________________164\n_____________|_______________________|\n5'-CUG...AUUCC____C____GAA___________UACAA...UCA-3'\n______________GUAG_GGGG____GGAACAGAGA\n______________:|||_||||____||||||||||\n______________UAUC_CCCC____CCUUGUCUCU\n3'-UUU...UAGAC____U____AACC__________CAUCG...AUA-5'\n_____________|_______________________|\n_____________39______________________15\n |
157 -- 163 |
16 -- 22 |
-28.36 kcal/mol |
3.46196 kcal/mol |
9.47701 kcal/mol |
141 164@LB@ | |@LB@5'-CUG...AUUCC C GAA UACAA...UCA-3'@LB@ GUAG GGGG GGAACAGAGA@LB@ :||| |||| ||||||||||@LB@ UAUC CCCC CCUUGUCUCU@LB@3'-UUU...UAGAC U AACC CAUCG...AUA-5'@LB@ | |@LB@ 39 15@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.36 kcal/mol@LB@Unfolding Energy - mRNA 3.46196 kcal/mol@LB@Unfolding Energy - sRNA 9.47701 kcal/mol@LB@@LB@Position - mRNA 142 -- 163@LB@Position - sRNA 16 -- 38@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 16 -- 22@LB@ |
163 |
0.01533 |
0.3122 |
bsu19639 |
yoyE |
-15.95 |
0.019304 |
185 -- 198 |
25 -- 39 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________184_____________199\n_____________|_______________|\n5'-UCA...CGCAG__A____________ACAUG...AAU-3'\n______________GA_GGAGGGGU_GGG\n______________||_:|||||||_|||\n______________CU_UCUCCCCA_CCC\n3'-UUU...CUAGA__A________A___CUUGU...AUA-5'\n_____________|_______________|\n_____________40______________24\n |
189 -- 195 |
29 -- 35 |
-22.4813 kcal/mol |
5.74668 kcal/mol |
0.783603 kcal/mol |
184 199@LB@ | |@LB@5'-UCA...CGCAG A ACAUG...AAU-3'@LB@ GA GGAGGGGU GGG@LB@ || :||||||| |||@LB@ CU UCUCCCCA CCC@LB@3'-UUU...CUAGA A A CUUGU...AUA-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -22.4813 kcal/mol@LB@Unfolding Energy - mRNA 5.74668 kcal/mol@LB@Unfolding Energy - sRNA 0.783603 kcal/mol@LB@@LB@Position - mRNA 185 -- 198@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 29 -- 35@LB@ |
164 |
0.01535 |
0.3122 |
bsu39720 |
iolE |
-13.03 |
0.070250 |
182 -- 189 |
30 -- 37 |
inosose dehydratase |
|
_____________181______190\n_____________|________|\n5'-GUU...AGUAU________AGGCA...UAA-3'\n______________UAGAGGGG\n______________||||||||\n______________AUCUCCCC\n3'-UUU...AGACU________AACCC...AUA-5'\n_____________|________|\n_____________38_______29\n |
183 -- 189 |
30 -- 36 |
-14.5397 kcal/mol |
1.33978 kcal/mol |
0.165704 kcal/mol |
181 190@LB@ | |@LB@5'-GUU...AGUAU AGGCA...UAA-3'@LB@ UAGAGGGG@LB@ ||||||||@LB@ AUCUCCCC@LB@3'-UUU...AGACU AACCC...AUA-5'@LB@ | |@LB@ 38 29@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -14.5397 kcal/mol@LB@Unfolding Energy - mRNA 1.33978 kcal/mol@LB@Unfolding Energy - sRNA 0.165704 kcal/mol@LB@@LB@Position - mRNA 182 -- 189@LB@Position - sRNA 30 -- 37@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 30 -- 36@LB@ |
165 |
0.01546 |
0.3127 |
bsu02230 |
purT |
-12.11 |
0.100898 |
185 -- 195 |
30 -- 39 |
phosphoribosylglycinamide formyltransferase |
|
_____________184_________196\n_____________|___________|\n5'-GAU...GAACA___A_______CAAAG...UUG-3'\n______________GAU_GGAGGGG\n______________|||_:||||||\n______________CUA_UCUCCCC\n3'-UUU...CUAGA___________AACCC...AUA-5'\n_____________|___________|\n_____________40__________29\n |
189 -- 195 |
30 -- 36 |
-15.5568 kcal/mol |
2.66346 kcal/mol |
0.779184 kcal/mol |
184 196@LB@ | |@LB@5'-GAU...GAACA A CAAAG...UUG-3'@LB@ GAU GGAGGGG@LB@ ||| :||||||@LB@ CUA UCUCCCC@LB@3'-UUU...CUAGA AACCC...AUA-5'@LB@ | |@LB@ 40 29@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -15.5568 kcal/mol@LB@Unfolding Energy - mRNA 2.66346 kcal/mol@LB@Unfolding Energy - sRNA 0.779184 kcal/mol@LB@@LB@Position - mRNA 185 -- 195@LB@Position - sRNA 30 -- 39@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 30 -- 36@LB@ |
166 |
0.01583 |
0.3152 |
bsu38190 |
galT |
-8.42 |
0.343831 |
170 -- 181 |
16 -- 26 |
galactose-1-phosphate uridylyltransferase |
|
_____________169__________182\n_____________|____________|\n5'-GGG...GGAGA_______A____ACUAA...AUG-3'\n______________GGGAGCG_GAGA\n______________||||:|:_||||\n______________CCCUUGU_CUCU\n3'-UUU...CCAAC____________CAUCG...AUA-5'\n_____________|____________|\n_____________27___________15\n |
170 -- 176 |
20 -- 26 |
-15.5563 kcal/mol |
1.12924 kcal/mol |
6.00672 kcal/mol |
169 182@LB@ | |@LB@5'-GGG...GGAGA A ACUAA...AUG-3'@LB@ GGGAGCG GAGA@LB@ ||||:|: ||||@LB@ CCCUUGU CUCU@LB@3'-UUU...CCAAC CAUCG...AUA-5'@LB@ | |@LB@ 27 15@LB@@LB@@LB@Energy -8.42 kcal/mol@LB@Hybridization Energy -15.5563 kcal/mol@LB@Unfolding Energy - mRNA 1.12924 kcal/mol@LB@Unfolding Energy - sRNA 6.00672 kcal/mol@LB@@LB@Position - mRNA 170 -- 181@LB@Position - sRNA 16 -- 26@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 20 -- 26@LB@ |
167 |
0.01619 |
0.3152 |
bsu31500 |
yuxK |
-13.98 |
0.047449 |
182 -- 199 |
26 -- 51 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________181__________________________200\n_____________|____________________________|\n5'-UAC...UUAAA______________________AUA___AGUGA...ACG-3'\n______________GGAUC__________GGAGGGG___UGG\n______________|||||__________:||||||___|||\n______________CCUAG__________UCUCCCC___ACC\n3'-UUU...AAAAG_____AACUAGACUA_______A_____CCUUG...AUA-5'\n_____________|____________________________|\n_____________52___________________________25\n |
187 -- 193 |
30 -- 36 |
-20.9361 kcal/mol |
5.98517 kcal/mol |
0.975822 kcal/mol |
181 200@LB@ | |@LB@5'-UAC...UUAAA AUA AGUGA...ACG-3'@LB@ GGAUC GGAGGGG UGG@LB@ ||||| :|||||| |||@LB@ CCUAG UCUCCCC ACC@LB@3'-UUU...AAAAG AACUAGACUA A CCUUG...AUA-5'@LB@ | |@LB@ 52 25@LB@@LB@@LB@Energy -13.98 kcal/mol@LB@Hybridization Energy -20.9361 kcal/mol@LB@Unfolding Energy - mRNA 5.98517 kcal/mol@LB@Unfolding Energy - sRNA 0.975822 kcal/mol@LB@@LB@Position - mRNA 182 -- 199@LB@Position - sRNA 26 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 30 -- 36@LB@ |
168 |
0.01631 |
0.3152 |
bsu14170 |
ykuP |
-12.43 |
0.089417 |
80 -- 100 |
11 -- 27 |
flavodoxin-2 |
|
_____________79____________________101\n_____________|_____________________|\n5'-CAC...AUUAA___ACAU______________CAAUC...UAG-3'\n______________GGG____GGAUGGAGAGUGGC\n______________|||____|:|::||||||:||\n______________CCC____CUUGUCUCUCAUCG\n3'-UUU...CCCAA_____________________AAGAG...AUA-5'\n_____________|_____________________|\n_____________28____________________10\n |
94 -- 100 |
11 -- 17 |
-24.7716 kcal/mol |
6.31596 kcal/mol |
6.0284 kcal/mol |
79 101@LB@ | |@LB@5'-CAC...AUUAA ACAU CAAUC...UAG-3'@LB@ GGG GGAUGGAGAGUGGC@LB@ ||| |:|::||||||:||@LB@ CCC CUUGUCUCUCAUCG@LB@3'-UUU...CCCAA AAGAG...AUA-5'@LB@ | |@LB@ 28 10@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -24.7716 kcal/mol@LB@Unfolding Energy - mRNA 6.31596 kcal/mol@LB@Unfolding Energy - sRNA 6.0284 kcal/mol@LB@@LB@Position - mRNA 80 -- 100@LB@Position - sRNA 11 -- 27@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 11 -- 17@LB@ |