| 2 |
2.736e-07 |
0.0004564 |
bsu10760 |
yisL |
-18.52 |
0.005045 |
172 -- 193 |
31 -- 51 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________171____________________194\n_____________|______________________|\n5'-UAC...AAGUG____AAUUU_____________AACAU...UCA-3'\n______________GGGU_____AUCUGAUAGGGGG\n______________||:|_____|||||||||:|||\n______________CCUA_____UAGACUAUCUCCC\n3'-UUU...AAAAG____GAAC______________CAACC...AUA-5'\n_____________|______________________|\n_____________52_____________________30\n |
187 -- 193 |
31 -- 37 |
-25.2722 kcal/mol |
5.77834 kcal/mol |
0.970589 kcal/mol |
171 194@LB@ | |@LB@5'-UAC...AAGUG AAUUU AACAU...UCA-3'@LB@ GGGU AUCUGAUAGGGGG@LB@ ||:| |||||||||:|||@LB@ CCUA UAGACUAUCUCCC@LB@3'-UUU...AAAAG GAAC CAACC...AUA-5'@LB@ | |@LB@ 52 30@LB@@LB@@LB@Energy -18.52 kcal/mol@LB@Hybridization Energy -25.2722 kcal/mol@LB@Unfolding Energy - mRNA 5.77834 kcal/mol@LB@Unfolding Energy - sRNA 0.970589 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 31 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 3 |
5.299e-07 |
0.0005893 |
bsu18000 |
citB |
-22.45 |
0.000394 |
173 -- 202 |
21 -- 50 |
aconitate hydratase |
|
_____________172______________________________203\n_____________|________________________________|\n5'-UCU...AGAAU____________________AUU____A____GGCAA...CGU-3'\n______________GAUC_UGAUCUGA_AGGGGG___UUGG_GAAU\n______________||||_||||||||_||:|||___||||_|||:\n______________CUAG_ACUAGACU_UCUCCC___AACC_CUUG\n3'-UUU...AAAGC____A________A______C______C____UCUCU...AUA-5'\n_____________|________________________________|\n_____________51_______________________________20\n |
178 -- 184 |
38 -- 44 |
-32.0259 kcal/mol |
6.8093 kcal/mol |
2.76846 kcal/mol |
172 203@LB@ | |@LB@5'-UCU...AGAAU AUU A GGCAA...CGU-3'@LB@ GAUC UGAUCUGA AGGGGG UUGG GAAU@LB@ |||| |||||||| ||:||| |||| |||:@LB@ CUAG ACUAGACU UCUCCC AACC CUUG@LB@3'-UUU...AAAGC A A C C UCUCU...AUA-5'@LB@ | |@LB@ 51 20@LB@@LB@@LB@Energy -22.45 kcal/mol@LB@Hybridization Energy -32.0259 kcal/mol@LB@Unfolding Energy - mRNA 6.8093 kcal/mol@LB@Unfolding Energy - sRNA 2.76846 kcal/mol@LB@@LB@Position - mRNA 173 -- 202@LB@Position - sRNA 21 -- 50@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 4 |
1.471e-05 |
0.01227 |
bsu32200 |
yutJ |
-17.92 |
0.007061 |
210 -- 239 |
21 -- 53 |
NADH dehydrogenase-like protein YutJ |
|
_____________209_______________________________240\n_____________|_________________________________|\n5'-UGA...AAAAA________________C_____UUAC_______AUGCG...UAA-3'\n______________UUGG_UCUUGAUC_GG_GGAGG_____GGGAAC\n______________|:||_||||||||_|:_:||||_____||||||\n______________AGCC_AGAACUAG_CU_UCUCC_____CCCUUG\n3'-UUU...AAAAA____U________A__A_____CCAAC______UCUCU...AUA-5'\n_____________|_________________________________|\n_____________54________________________________20\n |
215 -- 221 |
41 -- 47 |
-30.8017 kcal/mol |
10.1098 kcal/mol |
2.77573 kcal/mol |
209 240@LB@ | |@LB@5'-UGA...AAAAA C UUAC AUGCG...UAA-3'@LB@ UUGG UCUUGAUC GG GGAGG GGGAAC@LB@ |:|| |||||||| |: :|||| ||||||@LB@ AGCC AGAACUAG CU UCUCC CCCUUG@LB@3'-UUU...AAAAA U A A CCAAC UCUCU...AUA-5'@LB@ | |@LB@ 54 20@LB@@LB@@LB@Energy -17.92 kcal/mol@LB@Hybridization Energy -30.8017 kcal/mol@LB@Unfolding Energy - mRNA 10.1098 kcal/mol@LB@Unfolding Energy - sRNA 2.77573 kcal/mol@LB@@LB@Position - mRNA 210 -- 239@LB@Position - sRNA 21 -- 53@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 5 |
2.545e-05 |
0.01698 |
bsu22540 |
qcrC |
-19.98 |
0.002129 |
169 -- 196 |
23 -- 48 |
menaquinol-cytochrome c reductase cytochrome b/c subunit |
|
_____________168____________________________197\n_____________|______________________________|\n5'-AAC...UAAAC__________CGA___AA____A_______UGACA...AAA-3'\n______________UCUUGAUCUG___AUA__AGGG___GGGGA\n______________||||||||||___|||__||||___|||||\n______________AGAACUAGAC___UAU__UCCC___CCCCU\n3'-UUU...AGCCU________________C_____CAA_____UGUCU...AUA-5'\n_____________|______________________________|\n_____________49_____________________________22\n |
172 -- 178 |
39 -- 45 |
-27.164 kcal/mol |
6.20558 kcal/mol |
0.979889 kcal/mol |
168 197@LB@ | |@LB@5'-AAC...UAAAC CGA AA A UGACA...AAA-3'@LB@ UCUUGAUCUG AUA AGGG GGGGA@LB@ |||||||||| ||| |||| |||||@LB@ AGAACUAGAC UAU UCCC CCCCU@LB@3'-UUU...AGCCU C CAA UGUCU...AUA-5'@LB@ | |@LB@ 49 22@LB@@LB@@LB@Energy -19.98 kcal/mol@LB@Hybridization Energy -27.164 kcal/mol@LB@Unfolding Energy - mRNA 6.20558 kcal/mol@LB@Unfolding Energy - sRNA 0.979889 kcal/mol@LB@@LB@Position - mRNA 169 -- 196@LB@Position - sRNA 23 -- 48@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 7 |
4.152e-05 |
0.01979 |
bsu05670 |
ydgJ |
-17.13 |
0.010734 |
234 -- 258 |
25 -- 49 |
MarR family transcriptional regulator |
|
_____________233_______________________259\n_____________|_________________________|\n5'-AAG...UAAUA_______CAG__A___A___A____UUUUG...AUC-3'\n______________GUUUUGA___GA_AGA_GGG_UGGG\n______________:|:||||___||_|||_|||_||||\n______________UAGAACU___CU_UCU_CCC_ACCC\n3'-UUU...AAGCC_______AGA__A___C___A____CUUGU...AUA-5'\n_____________|_________________________|\n_____________50________________________24\n |
234 -- 240 |
43 -- 49 |
-20.9262 kcal/mol |
2.82407 kcal/mol |
0.976049 kcal/mol |
233 259@LB@ | |@LB@5'-AAG...UAAUA CAG A A A UUUUG...AUC-3'@LB@ GUUUUGA GA AGA GGG UGGG@LB@ :|:|||| || ||| ||| ||||@LB@ UAGAACU CU UCU CCC ACCC@LB@3'-UUU...AAGCC AGA A C A CUUGU...AUA-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -17.13 kcal/mol@LB@Hybridization Energy -20.9262 kcal/mol@LB@Unfolding Energy - mRNA 2.82407 kcal/mol@LB@Unfolding Energy - sRNA 0.976049 kcal/mol@LB@@LB@Position - mRNA 234 -- 258@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 8 |
5.206e-05 |
0.02171 |
bsu37180 |
fadF |
-12.43 |
0.089383 |
154 -- 199 |
26 -- 74 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 17189250; Product type pe : enzyme' |
|
_____________153____________________________________________________200\n_____________|______________________________________________________|\n5'-CAA...AGAUU_________G_GA___________C______U___A_UAAAA______AA____AAUGA...ACA-3'\n______________CGGGGGUAG_G__________UCG_GGUCUU_AUC_G_____AGGGGG__UUGG\n______________|||||||||_|__________|||_|:||||_|||_|_____||:|||__||||\n______________GCCCCCAUC_C__________AGC_CUAGAA_UAG_C_____UCUCCC__AACC\n3'-UUU...GAACC_________G_GGUUCAAAAA__________C___A_UA_________C_____CCUUG...AUA-5'\n_____________|______________________________________________________|\n_____________75_____________________________________________________25\n |
156 -- 162 |
66 -- 72 |
-40.4869 kcal/mol |
12.2576 kcal/mol |
15.8011 kcal/mol |
153 200@LB@ | |@LB@5'-CAA...AGAUU G GA C U A UAAAA AA AAUGA...ACA-3'@LB@ CGGGGGUAG G UCG GGUCUU AUC G AGGGGG UUGG@LB@ ||||||||| | ||| |:|||| ||| | ||:||| ||||@LB@ GCCCCCAUC C AGC CUAGAA UAG C UCUCCC AACC@LB@3'-UUU...GAACC G GGUUCAAAAA C A UA C CCUUG...AUA-5'@LB@ | |@LB@ 75 25@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -40.4869 kcal/mol@LB@Unfolding Energy - mRNA 12.2576 kcal/mol@LB@Unfolding Energy - sRNA 15.8011 kcal/mol@LB@@LB@Position - mRNA 154 -- 199@LB@Position - sRNA 26 -- 74@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 9 |
8.212e-05 |
0.03044 |
bsu07800 |
treP |
-22.21 |
0.000470 |
182 -- 210 |
21 -- 52 |
PTS system-trehalose-specific transporter subunit EIIBC |
|
_____________181____________________________________211\n_____________|______________________________________|\n5'-UUA...AAAAA_____AC__________________GGCAUG_______UGAAC...UUG-3'\n______________CGGAU___________GGAGGGGUU______GGGGAAC\n______________|||||___________:||||||||______|||||||\n______________GCCUA___________UCUCCCCAA______CCCCUUG\n3'-UUU...AAAAA_____GAACUAGACUA______________________UCUCU...AUA-5'\n_____________|______________________________________|\n_____________53_____________________________________20\n |
204 -- 210 |
21 -- 27 |
-29.9746 kcal/mol |
4.99416 kcal/mol |
2.77037 kcal/mol |
181 211@LB@ | |@LB@5'-UUA...AAAAA AC GGCAUG UGAAC...UUG-3'@LB@ CGGAU GGAGGGGUU GGGGAAC@LB@ ||||| :|||||||| |||||||@LB@ GCCUA UCUCCCCAA CCCCUUG@LB@3'-UUU...AAAAA GAACUAGACUA UCUCU...AUA-5'@LB@ | |@LB@ 53 20@LB@@LB@@LB@Energy -22.21 kcal/mol@LB@Hybridization Energy -29.9746 kcal/mol@LB@Unfolding Energy - mRNA 4.99416 kcal/mol@LB@Unfolding Energy - sRNA 2.77037 kcal/mol@LB@@LB@Position - mRNA 182 -- 210@LB@Position - sRNA 21 -- 52@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 10 |
0.0001049 |
0.035 |
bsu34190 |
yvfH |
-16.62 |
0.013859 |
188 -- 201 |
23 -- 36 |
L-lactate permease |
|
_____________187____________202\n_____________|______________|\n5'-UGG...UUCAA_________U____UGCAA...CGA-3'\n______________GGAGGGGUU_GGGA\n______________:||||||||_||||\n______________UCUCCCCAA_CCCU\n3'-UUU...GACUA_________C____UGUCU...AUA-5'\n_____________|______________|\n_____________37_____________22\n |
190 -- 196 |
28 -- 34 |
-23.4111 kcal/mol |
6.64684 kcal/mol |
0.139628 kcal/mol |
187 202@LB@ | |@LB@5'-UGG...UUCAA U UGCAA...CGA-3'@LB@ GGAGGGGUU GGGA@LB@ :|||||||| ||||@LB@ UCUCCCCAA CCCU@LB@3'-UUU...GACUA C UGUCU...AUA-5'@LB@ | |@LB@ 37 22@LB@@LB@@LB@Energy -16.62 kcal/mol@LB@Hybridization Energy -23.4111 kcal/mol@LB@Unfolding Energy - mRNA 6.64684 kcal/mol@LB@Unfolding Energy - sRNA 0.139628 kcal/mol@LB@@LB@Position - mRNA 188 -- 201@LB@Position - sRNA 23 -- 36@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 11 |
0.0001235 |
0.03747 |
bsu15610 |
sumT |
-12.35 |
0.092299 |
189 -- 208 |
22 -- 34 |
uroporphyrinogen-iii C-methyltransferase |
|
_____________188__________________209\n_____________|____________________|\n5'-GAA...AGAUC_____AAAUACGA_______AGUAU...AUG-3'\n______________GGGGG________UGGGGAA\n______________:||||________|||||||\n______________UCCCC________ACCCCUU\n3'-UUU...CUAUC_____A______________GUCUC...AUA-5'\n_____________|____________________|\n_____________35___________________21\n |
202 -- 208 |
22 -- 28 |
-16.2617 kcal/mol |
2.89451 kcal/mol |
1.02154 kcal/mol |
188 209@LB@ | |@LB@5'-GAA...AGAUC AAAUACGA AGUAU...AUG-3'@LB@ GGGGG UGGGGAA@LB@ :|||| |||||||@LB@ UCCCC ACCCCUU@LB@3'-UUU...CUAUC A GUCUC...AUA-5'@LB@ | |@LB@ 35 21@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -16.2617 kcal/mol@LB@Unfolding Energy - mRNA 2.89451 kcal/mol@LB@Unfolding Energy - sRNA 1.02154 kcal/mol@LB@@LB@Position - mRNA 189 -- 208@LB@Position - sRNA 22 -- 34@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 12 |
0.0001633 |
0.0454 |
bsu11410 |
yjbA |
-19.25 |
0.003321 |
222 -- 243 |
30 -- 52 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pf: factor' |
|
_____________221_______________________244\n_____________|_________________________|\n5'-GAA...AUGUG______AA_________________AAGAA...UUG-3'\n______________UGGGUC__UUGGUUUGA___AGGGG\n______________:||:||__|||:|:|||___|||||\n______________GCCUAG__AACUAGACU___UCCCC\n3'-UUU...AAAAA_________________AUC_____AACCC...AUA-5'\n_____________|_________________________|\n_____________53________________________29\n |
232 -- 238 |
38 -- 44 |
-23.9108 kcal/mol |
3.6845 kcal/mol |
0.979974 kcal/mol |
221 244@LB@ | |@LB@5'-GAA...AUGUG AA AAGAA...UUG-3'@LB@ UGGGUC UUGGUUUGA AGGGG@LB@ :||:|| |||:|:||| |||||@LB@ GCCUAG AACUAGACU UCCCC@LB@3'-UUU...AAAAA AUC AACCC...AUA-5'@LB@ | |@LB@ 53 29@LB@@LB@@LB@Energy -19.25 kcal/mol@LB@Hybridization Energy -23.9108 kcal/mol@LB@Unfolding Energy - mRNA 3.6845 kcal/mol@LB@Unfolding Energy - sRNA 0.979974 kcal/mol@LB@@LB@Position - mRNA 222 -- 243@LB@Position - sRNA 30 -- 52@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 38 -- 44@LB@ |
