34 |
0.01043 |
0.2518 |
ct_642 |
N/A |
-9.37 |
0.040224 |
239 -- 246 |
53 -- 60 |
|
|
_____________238______247\n_____________|________|\n5'-AGG...UCUUC________CUUCG...CUG-3'\n______________UCCCCCCU\n______________||||||||\n______________AGGGGGGA\n3'-UUU...ACUGA________CACAU...GAA-5'\n_____________|________|\n_____________61_______52\n |
240 -- 246 |
53 -- 59 |
-15.9954 kcal/mol |
0.170944 kcal/mol |
6.45136 kcal/mol |
238 247@LB@ | |@LB@5'-AGG...UCUUC CUUCG...CUG-3'@LB@ UCCCCCCU@LB@ ||||||||@LB@ AGGGGGGA@LB@3'-UUU...ACUGA CACAU...GAA-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -15.9954 kcal/mol@LB@Unfolding Energy - mRNA 0.170944 kcal/mol@LB@Unfolding Energy - sRNA 6.45136 kcal/mol@LB@@LB@Position - mRNA 239 -- 246@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 53 -- 59@LB@ |
125 |
0.05005 |
0.3262 |
ct_644 |
yohI |
-5.25 |
0.326074 |
256 -- 262 |
53 -- 59 |
tRNA-dihydrouridine synthase |
|
_____________255_____263\n_____________|_______|\n5'-CUG...CUACG_______AGCGG...CGG-3'\n______________CCCCCUU\n______________|||||:|\n______________GGGGGGA\n3'-UUU...CUGAA_______CACAU...GAA-5'\n_____________|_______|\n_____________60______52\n |
256 -- 262 |
53 -- 59 |
-11.5527 kcal/mol |
0.822659 kcal/mol |
5.47887 kcal/mol |
255 263@LB@ | |@LB@5'-CUG...CUACG AGCGG...CGG-3'@LB@ CCCCCUU@LB@ |||||:|@LB@ GGGGGGA@LB@3'-UUU...CUGAA CACAU...GAA-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -5.25 kcal/mol@LB@Hybridization Energy -11.5527 kcal/mol@LB@Unfolding Energy - mRNA 0.822659 kcal/mol@LB@Unfolding Energy - sRNA 5.47887 kcal/mol@LB@@LB@Position - mRNA 256 -- 262@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 53 -- 59@LB@ |
141 |
0.05655 |
0.3262 |
ct_645 |
N/A |
-6.85 |
0.155161 |
266 -- 276 |
17 -- 28 |
|
|
_____________265__________277\n_____________|____________|\n5'-GAG...GUUCU____________UGCCA...AGU-3'\n______________UUGUUCC_UGGC\n______________:|:||||_||||\n______________GAUAAGG_ACCG\n3'-UUU...UCUUC_______U____CAAUC...GAA-5'\n_____________|____________|\n_____________29___________16\n |
266 -- 272 |
22 -- 28 |
-12.7306 kcal/mol |
1.25811 kcal/mol |
4.62088 kcal/mol |
265 277@LB@ | |@LB@5'-GAG...GUUCU UGCCA...AGU-3'@LB@ UUGUUCC UGGC@LB@ :|:|||| ||||@LB@ GAUAAGG ACCG@LB@3'-UUU...UCUUC U CAAUC...GAA-5'@LB@ | |@LB@ 29 16@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -12.7306 kcal/mol@LB@Unfolding Energy - mRNA 1.25811 kcal/mol@LB@Unfolding Energy - sRNA 4.62088 kcal/mol@LB@@LB@Position - mRNA 266 -- 276@LB@Position - sRNA 17 -- 28@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 22 -- 28@LB@ |
151 |
0.06398 |
0.3424 |
ct_647 |
N/A |
-6.81 |
0.158308 |
265 -- 281 |
12 -- 34 |
|
|
_____________264_____________________282\n_____________|_______________________|\n5'-UAU...UGCAA_______________________CGUCA...AGG-3'\n______________UAGGAGC______AUGGUGUUGG\n______________:||:|||______||||:|||:|\n______________GUCUUCG______UACCGCAAUC\n3'-UUU...UCUCA_______AUAAGG__________UUAUG...GAA-5'\n_____________|_______________________|\n_____________35______________________11\n |
274 -- 280 |
13 -- 19 |
-18.8273 kcal/mol |
3.44317 kcal/mol |
8.57325 kcal/mol |
264 282@LB@ | |@LB@5'-UAU...UGCAA CGUCA...AGG-3'@LB@ UAGGAGC AUGGUGUUGG@LB@ :||:||| ||||:|||:|@LB@ GUCUUCG UACCGCAAUC@LB@3'-UUU...UCUCA AUAAGG UUAUG...GAA-5'@LB@ | |@LB@ 35 11@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -18.8273 kcal/mol@LB@Unfolding Energy - mRNA 3.44317 kcal/mol@LB@Unfolding Energy - sRNA 8.57325 kcal/mol@LB@@LB@Position - mRNA 265 -- 281@LB@Position - sRNA 12 -- 34@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 13 -- 19@LB@ |
183 |
0.08019 |
0.3602 |
ct_648 |
N/A |
-7.31 |
0.122948 |
212 -- 231 |
14 -- 34 |
|
|
_____________211___________________232\n_____________|_____________________|\n5'-ACU...GUAAG________UAAG_________UAUGU...UUA-3'\n______________UAGAAGCU_____AUGGUGUU\n______________:|||||||_____||||:|||\n______________GUCUUCGA_____UACCGCAA\n3'-UUU...UCUCA________UAAGG________UCUUA...GAA-5'\n_____________|_____________________|\n_____________35____________________13\n |
225 -- 231 |
14 -- 20 |
-20.6397 kcal/mol |
4.879 kcal/mol |
8.44924 kcal/mol |
211 232@LB@ | |@LB@5'-ACU...GUAAG UAAG UAUGU...UUA-3'@LB@ UAGAAGCU AUGGUGUU@LB@ :||||||| ||||:|||@LB@ GUCUUCGA UACCGCAA@LB@3'-UUU...UCUCA UAAGG UCUUA...GAA-5'@LB@ | |@LB@ 35 13@LB@@LB@@LB@Energy -7.31 kcal/mol@LB@Hybridization Energy -20.6397 kcal/mol@LB@Unfolding Energy - mRNA 4.879 kcal/mol@LB@Unfolding Energy - sRNA 8.44924 kcal/mol@LB@@LB@Position - mRNA 212 -- 231@LB@Position - sRNA 14 -- 34@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 14 -- 20@LB@ |
32 |
0.009822 |
0.2518 |
ct_649 |
ygfA |
-6.64 |
0.172247 |
22 -- 28 |
80 -- 86 |
5-formyltetrahydrofolate cyclo-ligase |
|
_____________21______29\n_____________|_______|\n5'-UAC...AAGUG_______CCGAG...AGC-3'\n______________AUGGCUA\n______________|:|||||\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
22 -- 28 |
80 -- 86 |
-8.81528 kcal/mol |
1.11082 kcal/mol |
1.06449 kcal/mol |
21 29@LB@ | |@LB@5'-UAC...AAGUG CCGAG...AGC-3'@LB@ AUGGCUA@LB@ |:|||||@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -8.81528 kcal/mol@LB@Unfolding Energy - mRNA 1.11082 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 22 -- 28@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 80 -- 86@LB@ |
146 |
0.05858 |
0.3298 |
ct_655 |
kdsA |
-5.70 |
0.267824 |
236 -- 245 |
48 -- 57 |
2-dehydro-3-deoxyphosphooctonate aldolase |
|
_____________235________246\n_____________|__________|\n5'-GCU...GCAGG__________AUUGA...CUC-3'\n______________CCCUUGUGUA\n______________|||:||||||\n______________GGGGACACAU\n3'-UUU...GAAGG__________GUUUG...GAA-5'\n_____________|__________|\n_____________58_________47\n |
237 -- 243 |
50 -- 56 |
-16.3498 kcal/mol |
3.37377 kcal/mol |
7.27486 kcal/mol |
235 246@LB@ | |@LB@5'-GCU...GCAGG AUUGA...CUC-3'@LB@ CCCUUGUGUA@LB@ |||:||||||@LB@ GGGGACACAU@LB@3'-UUU...GAAGG GUUUG...GAA-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -5.70 kcal/mol@LB@Hybridization Energy -16.3498 kcal/mol@LB@Unfolding Energy - mRNA 3.37377 kcal/mol@LB@Unfolding Energy - sRNA 7.27486 kcal/mol@LB@@LB@Position - mRNA 236 -- 245@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 50 -- 56@LB@ |
161 |
0.06753 |
0.3424 |
ct_656 |
N/A |
-5.22 |
0.330968 |
193 -- 236 |
21 -- 57 |
|
|
_____________192_____________________________________________237\n_____________|_______________________________________________|\n5'-AUG...GGGAG_________________GCAAUUCAUAGC_______U________G_AACCA...UGA-3'\n______________UCUCU_UGUAUGGACAC____________GAGUCAG___CUGUUC_A\n______________:|:||_||||:::||||____________|||||||___||:|||_|\n______________GGGGA_ACAUGUUUGUG____________CUCAGUC___GAUAAG_U\n3'-UUU...GAAGG_____C___________AU_________________UUC______G_ACCGC...GAA-5'\n_____________|_______________________________________________|\n_____________58______________________________________________20\n |
221 -- 227 |
32 -- 38 |
-30.4155 kcal/mol |
12.5085 kcal/mol |
12.6912 kcal/mol |
192 237@LB@ | |@LB@5'-AUG...GGGAG GCAAUUCAUAGC U G AACCA...UGA-3'@LB@ UCUCU UGUAUGGACAC GAGUCAG CUGUUC A@LB@ :|:|| ||||:::|||| ||||||| ||:||| |@LB@ GGGGA ACAUGUUUGUG CUCAGUC GAUAAG U@LB@3'-UUU...GAAGG C AU UUC G ACCGC...GAA-5'@LB@ | |@LB@ 58 20@LB@@LB@@LB@Energy -5.22 kcal/mol@LB@Hybridization Energy -30.4155 kcal/mol@LB@Unfolding Energy - mRNA 12.5085 kcal/mol@LB@Unfolding Energy - sRNA 12.6912 kcal/mol@LB@@LB@Position - mRNA 193 -- 236@LB@Position - sRNA 21 -- 57@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 32 -- 38@LB@ |
163 |
0.06794 |
0.3424 |
ct_661 |
N/A |
-2.85 |
0.735752 |
184 -- 191 |
21 -- 28 |
DNA topoisomerase IV subunit B |
|
_____________183______192\n_____________|________|\n5'-AAA...UUGCC________CACAC...GCG-3'\n______________UUAUUCCA\n______________:|||||||\n______________GAUAAGGU\n3'-UUU...UCUUC________ACCGC...GAA-5'\n_____________|________|\n_____________29_______20\n |
185 -- 191 |
21 -- 27 |
-7.6538 kcal/mol |
0.450062 kcal/mol |
4.35509 kcal/mol |
183 192@LB@ | |@LB@5'-AAA...UUGCC CACAC...GCG-3'@LB@ UUAUUCCA@LB@ :|||||||@LB@ GAUAAGGU@LB@3'-UUU...UCUUC ACCGC...GAA-5'@LB@ | |@LB@ 29 20@LB@@LB@@LB@Energy -2.85 kcal/mol@LB@Hybridization Energy -7.6538 kcal/mol@LB@Unfolding Energy - mRNA 0.450062 kcal/mol@LB@Unfolding Energy - sRNA 4.35509 kcal/mol@LB@@LB@Position - mRNA 184 -- 191@LB@Position - sRNA 21 -- 28@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 21 -- 27@LB@ |
159 |
0.06732 |
0.3424 |
ct_663 |
N/A |
-7.57 |
0.107718 |
228 -- 234 |
15 -- 21 |
type III secretion system chaperone |
|
_____________227_____235\n_____________|_______|\n5'-UCU...AUUUU_______AUAUG...GCC-3'\n______________GUGGCGU\n______________:||||||\n______________UACCGCA\n3'-UUU...UAAGG_______AUCUU...GAA-5'\n_____________|_______|\n_____________22______14\n |
228 -- 234 |
15 -- 21 |
-10.4333 kcal/mol |
1.67755 kcal/mol |
1.18845 kcal/mol |
227 235@LB@ | |@LB@5'-UCU...AUUUU AUAUG...GCC-3'@LB@ GUGGCGU@LB@ :||||||@LB@ UACCGCA@LB@3'-UUU...UAAGG AUCUU...GAA-5'@LB@ | |@LB@ 22 14@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -10.4333 kcal/mol@LB@Unfolding Energy - mRNA 1.67755 kcal/mol@LB@Unfolding Energy - sRNA 1.18845 kcal/mol@LB@@LB@Position - mRNA 228 -- 234@LB@Position - sRNA 15 -- 21@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 15 -- 21@LB@ |