121 |
0.01302 |
0.3615 |
b0966 |
hspQ |
-14.11 |
0.039362 |
113 -- 134 |
1 -- 23 |
heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein |
|
_____________112_____________________135\n_____________|_______________________|\n5'-AGA...CUAUA____AA_______G_________GUCAU...CUG-3'\n______________UCUG__AGGGUUU_CCUG_UCGC\n______________||:|__|||||:|_||||_||||\n______________AGGC__UCCCAGA_GGAC_AGCG\n3'-UUU...CCAAG____GC_______A____U____-5'\n_____________|______________________|\n_____________24_____________________1\n |
119 -- 125 |
11 -- 17 |
-28.2829 kcal/mol |
6.57487 kcal/mol |
7.59819 kcal/mol |
112 135@LB@ | |@LB@5'-AGA...CUAUA AA G GUCAU...CUG-3'@LB@ UCUG AGGGUUU CCUG UCGC@LB@ ||:| |||||:| |||| ||||@LB@ AGGC UCCCAGA GGAC AGCG@LB@3'-UUU...CCAAG GC A U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -28.2829 kcal/mol@LB@Unfolding Energy - mRNA 6.57487 kcal/mol@LB@Unfolding Energy - sRNA 7.59819 kcal/mol@LB@@LB@Position - mRNA 113 -- 134@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 11 -- 17@LB@ |
122 |
0.01331 |
0.3627 |
b0078 |
ilvH |
-10.99 |
0.130728 |
66 -- 84 |
41 -- 61 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________65____________________85\n_____________|_____________________|\n5'-GCC...GAGGC_______________C_____AAUCG...UGA-3'\n______________GCUGGAA_CAG_GUG_GCAAU\n______________:||||||_||:_|||_|||||\n______________UGACCUU_GUU_CAC_CGUUA\n3'-UUU...CAUUA_______C___A___U_____CAGCA...GCG-5'\n_____________|_____________________|\n_____________62____________________40\n |
66 -- 72 |
55 -- 61 |
-20.2432 kcal/mol |
5.95009 kcal/mol |
3.30062 kcal/mol |
65 85@LB@ | |@LB@5'-GCC...GAGGC C AAUCG...UGA-3'@LB@ GCUGGAA CAG GUG GCAAU@LB@ :|||||| ||: ||| |||||@LB@ UGACCUU GUU CAC CGUUA@LB@3'-UUU...CAUUA C A U CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -20.2432 kcal/mol@LB@Unfolding Energy - mRNA 5.95009 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 66 -- 84@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 55 -- 61@LB@ |
123 |
0.0134 |
0.3627 |
b3774 |
ilvC |
-11.90 |
0.092739 |
9 -- 41 |
1 -- 25 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________8__________________________________42\n_____________|__________________________________|\n___5'-AUGGCGGC_______CAGAUGCAG__A_______A_______GUAAA...GCU-3'\n______________UUUCCGC_________GA_GGUUUUC__GAUCGC\n______________|:|||||_________||_|||:|||__||||||\n______________AGAGGCG_________CU_CCAGAAG__CUAGCG\n3'-UUU...GUCCA__________________C_______GA______-5'\n_____________|_________________________________|\n_____________26________________________________1\n |
28 -- 34 |
9 -- 15 |
-28.1375 kcal/mol |
8.51703 kcal/mol |
7.71912 kcal/mol |
8 42@LB@ | |@LB@ 5'-AUGGCGGC CAGAUGCAG A A GUAAA...GCU-3'@LB@ UUUCCGC GA GGUUUUC GAUCGC@LB@ |:||||| || |||:||| ||||||@LB@ AGAGGCG CU CCAGAAG CUAGCG@LB@3'-UUU...GUCCA C GA -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -28.1375 kcal/mol@LB@Unfolding Energy - mRNA 8.51703 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 9 -- 41@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 9 -- 15@LB@ |
124 |
0.01356 |
0.3627 |
b2232 |
ubiG |
-16.56 |
0.014945 |
261 -- 300 |
44 -- 89 |
bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase |
|
_____________260_____________________________________________300\n_____________|_______________________________________________|\n5'-CUU...AAUUU_______U_____CCC______GG________________________-3'\n______________GAAGCCG_CGCCU___GCUGGU_____GAU_CUGGAAG____GUGAGU\n______________:|||||:_|:||:___|||||:_____:||_|||||||____|||||:\n______________UUUCGGU_GUGGG___CGACCG_____UUA_GACCUUC____CACUCG\n__________3'-U_______C_____C________AUUCA___U_______GUUA______UUACA...GCG-5'\n_____________|________________________________________________|\n_____________90_______________________________________________43\n |
288 -- 294 |
54 -- 60 |
-44.5757 kcal/mol |
13.1093 kcal/mol |
14.9095 kcal/mol |
260 300@LB@ | |@LB@5'-CUU...AAUUU U CCC GG -3'@LB@ GAAGCCG CGCCU GCUGGU GAU CUGGAAG GUGAGU@LB@ :|||||: |:||: |||||: :|| ||||||| |||||:@LB@ UUUCGGU GUGGG CGACCG UUA GACCUUC CACUCG@LB@ 3'-U C C AUUCA U GUUA UUACA...GCG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -44.5757 kcal/mol@LB@Unfolding Energy - mRNA 13.1093 kcal/mol@LB@Unfolding Energy - sRNA 14.9095 kcal/mol@LB@@LB@Position - mRNA 261 -- 300@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 54 -- 60@LB@ |
125 |
0.0136 |
0.3627 |
b3647 |
ligB |
-15.20 |
0.025592 |
210 -- 279 |
1 -- 59 |
DNA ligase NAD(+)-dependent |
|
_____________209_____________________________________________________________________280\n_____________|_______________________________________________________________________|\n5'-GGC...AAGUA____U______AUUAAUA____UC________GG__AUCA___G______C_____GUCCGG_________CAGCC...AAA-3'\n______________UGGA_GGCGAU_______GGUA___UUGUGCU__CA____UCU_UGUGGG_GGUCU______CCUGGUCGC\n______________||||_:||:||_______:|:|___|:|||||__||____|||_:|:|:|_|||||______||||:||||\n______________ACCU_UCGUUA_______UCGU___AGCACGA__GU____AGA_GCGCUC_CCAGA______GGACUAGCG\n3'-UUU...UUAUG___________CAC________UAC_______AA__CCA____G____________A______________-5'\n_____________|______________________________________________________________________|\n_____________60_____________________________________________________________________1\n |
273 -- 279 |
1 -- 7 |
-52.2567 kcal/mol |
22.9457 kcal/mol |
14.1095 kcal/mol |
209 280@LB@ | |@LB@5'-GGC...AAGUA U AUUAAUA UC GG AUCA G C GUCCGG CAGCC...AAA-3'@LB@ UGGA GGCGAU GGUA UUGUGCU CA UCU UGUGGG GGUCU CCUGGUCGC@LB@ |||| :||:|| :|:| |:||||| || ||| :|:|:| ||||| ||||:||||@LB@ ACCU UCGUUA UCGU AGCACGA GU AGA GCGCUC CCAGA GGACUAGCG@LB@3'-UUU...UUAUG CAC UAC AA CCA G A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -52.2567 kcal/mol@LB@Unfolding Energy - mRNA 22.9457 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 210 -- 279@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 1 -- 7@LB@ |
126 |
0.01361 |
0.3627 |
b2135 |
yohC |
-14.18 |
0.038247 |
192 -- 212 |
38 -- 58 |
Yip1 family inner membrane protein |
|
_____________191___________________213\n_____________|_____________________|\n5'-CAU...AACAA_________A_____C_____UGGGG...UUU-3'\n______________GGGGGCGGU_UGAGC_AUGUC\n______________||::||::|_|||||_|||||\n______________CCUUCGUUA_ACUCG_UACAG\n3'-UUU...UAUGA_________C_____U_____CACGA...GCG-5'\n_____________|_____________________|\n_____________59____________________37\n |
192 -- 198 |
52 -- 58 |
-26.6444 kcal/mol |
9.24504 kcal/mol |
3.21639 kcal/mol |
191 213@LB@ | |@LB@5'-CAU...AACAA A C UGGGG...UUU-3'@LB@ GGGGGCGGU UGAGC AUGUC@LB@ ||::||::| ||||| |||||@LB@ CCUUCGUUA ACUCG UACAG@LB@3'-UUU...UAUGA C U CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.18 kcal/mol@LB@Hybridization Energy -26.6444 kcal/mol@LB@Unfolding Energy - mRNA 9.24504 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
127 |
0.01387 |
0.3627 |
b1224 |
narG |
-12.01 |
0.089072 |
151 -- 160 |
37 -- 46 |
nitrate reductase 1 alpha subunit |
|
_____________150________161\n_____________|__________|\n5'-UAA...ACAUU__________AUUUA...AGG-3'\n______________AGCAAUGUCG\n______________||||||||||\n______________UCGUUACAGC\n3'-UUU...UACAC__________ACGAA...GCG-5'\n_____________|__________|\n_____________47_________36\n |
154 -- 160 |
37 -- 43 |
-14.8133 kcal/mol |
1.65076 kcal/mol |
1.15554 kcal/mol |
150 161@LB@ | |@LB@5'-UAA...ACAUU AUUUA...AGG-3'@LB@ AGCAAUGUCG@LB@ ||||||||||@LB@ UCGUUACAGC@LB@3'-UUU...UACAC ACGAA...GCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -14.8133 kcal/mol@LB@Unfolding Energy - mRNA 1.65076 kcal/mol@LB@Unfolding Energy - sRNA 1.15554 kcal/mol@LB@@LB@Position - mRNA 151 -- 160@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 37 -- 43@LB@ |
128 |
0.01397 |
0.3627 |
b1656 |
sodB |
-9.64 |
0.214388 |
197 -- 205 |
38 -- 46 |
superoxide dismutase Fe |
|
_____________196_______206\n_____________|_________|\n5'-UCU...AGAGU_________AUUCG...AGA-3'\n______________AGCAAUGUC\n______________|||||||||\n______________UCGUUACAG\n3'-UUU...UACAC_________CACGA...GCG-5'\n_____________|_________|\n_____________47________37\n |
199 -- 205 |
38 -- 44 |
-13.5738 kcal/mol |
2.78264 kcal/mol |
1.15511 kcal/mol |
196 206@LB@ | |@LB@5'-UCU...AGAGU AUUCG...AGA-3'@LB@ AGCAAUGUC@LB@ |||||||||@LB@ UCGUUACAG@LB@3'-UUU...UACAC CACGA...GCG-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -9.64 kcal/mol@LB@Hybridization Energy -13.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.78264 kcal/mol@LB@Unfolding Energy - sRNA 1.15511 kcal/mol@LB@@LB@Position - mRNA 197 -- 205@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
129 |
0.01401 |
0.3627 |
b0696 |
kdpC |
-11.63 |
0.102829 |
282 -- 295 |
49 -- 63 |
potassium translocating ATPase subunit C |
|
_____________281_____________296\n_____________|_______________|\n5'-GCG...CCACC_______________GUGGU-3'\n______________GUACUGG_GGCAAUG\n______________:||||||_:||||||\n______________UAUGACC_UCGUUAC\n3'-UUU...UUCAU_______U_______ACUCG...GCG-5'\n_____________|_______________|\n_____________64______________48\n |
289 -- 295 |
49 -- 55 |
-18.0603 kcal/mol |
3.42021 kcal/mol |
3.01015 kcal/mol |
281 296@LB@ | |@LB@5'-GCG...CCACC GUGGU-3'@LB@ GUACUGG GGCAAUG@LB@ :|||||| :||||||@LB@ UAUGACC UCGUUAC@LB@3'-UUU...UUCAU U ACUCG...GCG-5'@LB@ | |@LB@ 64 48@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -18.0603 kcal/mol@LB@Unfolding Energy - mRNA 3.42021 kcal/mol@LB@Unfolding Energy - sRNA 3.01015 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 49 -- 63@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 49 -- 55@LB@ |
130 |
0.01403 |
0.3627 |
b3531 |
bcsZ |
-10.44 |
0.160598 |
268 -- 291 |
50 -- 82 |
endo-1 4-D-glucanase |
|
_____________267_______________________________292\n_____________|_________________________________|\n5'-UCA...AGCCU_________CU______________________UUAAA...AGG-3'\n______________GUACCUGGC__GC_________CUGGGAGCAGU\n______________|:|||:|||__||_________||||:||||:|\n______________CGUGGGCCG__CG_________GACCUUCGUUA\n___3'-UUUUCGGU_________AC__AUUCAUUAU___________CACUC...GCG-5'\n_____________|_________________________________|\n_____________83________________________________49\n |
283 -- 289 |
52 -- 58 |
-33.5305 kcal/mol |
8.70748 kcal/mol |
14.3864 kcal/mol |
267 292@LB@ | |@LB@5'-UCA...AGCCU CU UUAAA...AGG-3'@LB@ GUACCUGGC GC CUGGGAGCAGU@LB@ |:|||:||| || ||||:||||:|@LB@ CGUGGGCCG CG GACCUUCGUUA@LB@ 3'-UUUUCGGU AC AUUCAUUAU CACUC...GCG-5'@LB@ | |@LB@ 83 49@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -33.5305 kcal/mol@LB@Unfolding Energy - mRNA 8.70748 kcal/mol@LB@Unfolding Energy - sRNA 14.3864 kcal/mol@LB@@LB@Position - mRNA 268 -- 291@LB@Position - sRNA 50 -- 82@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 52 -- 58@LB@ |