152 |
0.03059 |
0.6177 |
b2609 |
rpsP |
-6.70 |
0.186060 |
187 -- 203 |
23 -- 53 |
30S ribosomal subunit protein S16 |
|
_____________186______________________________204\n_____________|________________________________|\n5'-UCA...AUUCA__C_____________________________GUAAC...UCG-3'\n______________CA_AAGAGGA_______________UGUUAUG\n______________||_|||||||_______________|:|||||\n______________GU_UUCUCCU_______________AUAAUAC\n3'-UUU...GGGCA__________UAAAGUAAAAAAAUA_______GGCAG...ACA-5'\n_____________|________________________________|\n_____________54_______________________________22\n |
197 -- 203 |
23 -- 29 |
-10.7305 kcal/mol |
2.84664 kcal/mol |
1.18482 kcal/mol |
186 204@LB@ | |@LB@5'-UCA...AUUCA C GUAAC...UCG-3'@LB@ CA AAGAGGA UGUUAUG@LB@ || ||||||| |:|||||@LB@ GU UUCUCCU AUAAUAC@LB@3'-UUU...GGGCA UAAAGUAAAAAAAUA GGCAG...ACA-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.70 kcal/mol@LB@Hybridization Energy -10.7305 kcal/mol@LB@Unfolding Energy - mRNA 2.84664 kcal/mol@LB@Unfolding Energy - sRNA 1.18482 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 23 -- 29@LB@ |
30 |
0.005789 |
0.6127 |
b2688 |
gshA |
-11.51 |
0.020183 |
254 -- 264 |
45 -- 55 |
glutamate-cysteine ligase |
|
_____________253_________265\n_____________|___________|\n5'-UGU...CAGGC___________UACAG...UUA-3'\n______________GUUAAAGGGGA\n______________||:||||:|||\n______________CAGUUUCUCCU\n3'-UUU...CCGGG___________UAAAG...ACA-5'\n_____________|___________|\n_____________56__________44\n |
258 -- 264 |
45 -- 51 |
-13.8935 kcal/mol |
1.45381 kcal/mol |
0.930875 kcal/mol |
253 265@LB@ | |@LB@5'-UGU...CAGGC UACAG...UUA-3'@LB@ GUUAAAGGGGA@LB@ ||:||||:|||@LB@ CAGUUUCUCCU@LB@3'-UUU...CCGGG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -13.8935 kcal/mol@LB@Unfolding Energy - mRNA 1.45381 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 254 -- 264@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 45 -- 51@LB@ |
98 |
0.0193 |
0.6177 |
b2705 |
srlD |
-10.75 |
0.028892 |
101 -- 114 |
40 -- 53 |
sorbitol-6-phosphate dehydrogenase |
|
_____________100____________115\n_____________|______________|\n5'-CAC...UUAAA_____C________CGGGC...AUA-3'\n______________CGAAG_GGAAUUUC\n______________|:|||_||||||||\n______________GUUUC_CCUUAAAG\n3'-UUU...GGGCA_____U________UAAAA...ACA-5'\n_____________|______________|\n_____________54_____________39\n |
108 -- 114 |
40 -- 46 |
-15.1517 kcal/mol |
3.39572 kcal/mol |
1.00568 kcal/mol |
100 115@LB@ | |@LB@5'-CAC...UUAAA C CGGGC...AUA-3'@LB@ CGAAG GGAAUUUC@LB@ |:||| ||||||||@LB@ GUUUC CCUUAAAG@LB@3'-UUU...GGGCA U UAAAA...ACA-5'@LB@ | |@LB@ 54 39@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -15.1517 kcal/mol@LB@Unfolding Energy - mRNA 3.39572 kcal/mol@LB@Unfolding Energy - sRNA 1.00568 kcal/mol@LB@@LB@Position - mRNA 101 -- 114@LB@Position - sRNA 40 -- 53@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 40 -- 46@LB@ |
104 |
0.02144 |
0.6177 |
b2718 |
hycH |
-8.07 |
0.100760 |
181 -- 190 |
46 -- 55 |
hydrogenase 3 maturation protein |
|
_____________180________191\n_____________|__________|\n5'-CAG...AUGUU__________CGCGU...UGG-3'\n______________GUUGAAGAGG\n______________||::||||||\n______________CAGUUUCUCC\n3'-UUU...CCGGG__________UUAAA...ACA-5'\n_____________|__________|\n_____________56_________45\n |
184 -- 190 |
46 -- 52 |
-11.8031 kcal/mol |
2.8078 kcal/mol |
0.924411 kcal/mol |
180 191@LB@ | |@LB@5'-CAG...AUGUU CGCGU...UGG-3'@LB@ GUUGAAGAGG@LB@ ||::||||||@LB@ CAGUUUCUCC@LB@3'-UUU...CCGGG UUAAA...ACA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -11.8031 kcal/mol@LB@Unfolding Energy - mRNA 2.8078 kcal/mol@LB@Unfolding Energy - sRNA 0.924411 kcal/mol@LB@@LB@Position - mRNA 181 -- 190@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 46 -- 52@LB@ |
81 |
0.01751 |
0.6177 |
b2741 |
rpoS |
-9.52 |
0.051528 |
88 -- 101 |
44 -- 56 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________87_____________102\n_____________|______________|\n5'-CGG...AAAUU_____C________AUCCG...AGG-3'\n______________CGUUA_AAGGGGAA\n______________|||:|_|||:||||\n______________GCAGU_UUCUCCUU\n3'-UUU...ACCGG______________AAAGU...ACA-5'\n_____________|______________|\n_____________57_____________43\n |
95 -- 101 |
44 -- 50 |
-13.0318 kcal/mol |
2.56318 kcal/mol |
0.948902 kcal/mol |
87 102@LB@ | |@LB@5'-CGG...AAAUU C AUCCG...AGG-3'@LB@ CGUUA AAGGGGAA@LB@ |||:| |||:||||@LB@ GCAGU UUCUCCUU@LB@3'-UUU...ACCGG AAAGU...ACA-5'@LB@ | |@LB@ 57 43@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -13.0318 kcal/mol@LB@Unfolding Energy - mRNA 2.56318 kcal/mol@LB@Unfolding Energy - sRNA 0.948902 kcal/mol@LB@@LB@Position - mRNA 88 -- 101@LB@Position - sRNA 44 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 44 -- 50@LB@ |
78 |
0.01669 |
0.6177 |
b2764 |
cysJ |
-9.29 |
0.057302 |
85 -- 99 |
53 -- 70 |
sulfite reductase alpha subunit flavoprotein |
|
_____________84_________________100\n_____________|__________________|\n5'-UUC...UUAGU__________________UUUAA...UUG-3'\n______________UAUCGCUAU___CCCGUC\n______________|||||||||___||||||\n______________AUAGCGAUA___GGGCAG\n3'-UUU...CGGUU_________ACC______UUUCU...ACA-5'\n_____________|__________________|\n_____________71_________________52\n |
87 -- 93 |
62 -- 68 |
-22.2411 kcal/mol |
2.01357 kcal/mol |
10.9351 kcal/mol |
84 100@LB@ | |@LB@5'-UUC...UUAGU UUUAA...UUG-3'@LB@ UAUCGCUAU CCCGUC@LB@ ||||||||| ||||||@LB@ AUAGCGAUA GGGCAG@LB@3'-UUU...CGGUU ACC UUUCU...ACA-5'@LB@ | |@LB@ 71 52@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -22.2411 kcal/mol@LB@Unfolding Energy - mRNA 2.01357 kcal/mol@LB@Unfolding Energy - sRNA 10.9351 kcal/mol@LB@@LB@Position - mRNA 85 -- 99@LB@Position - sRNA 53 -- 70@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 62 -- 68@LB@ |
112 |
0.02248 |
0.6177 |
b2796 |
sdaC |
-8.62 |
0.078257 |
115 -- 131 |
34 -- 50 |
putative serine transporter |
|
_____________114_______________132\n_____________|_________________|\n5'-AUC...CCGAU___CA____________ACGGU...CAA-3'\n______________AGA__GAUUUCAUUUUU\n______________|||__:|||||||||||\n______________UCU__UUAAAGUAAAAA\n3'-UUU...CAGUU___CC____________AAUAA...ACA-5'\n_____________|_________________|\n_____________51________________33\n |
125 -- 131 |
34 -- 40 |
-11.667 kcal/mol |
1.97198 kcal/mol |
1.0739 kcal/mol |
114 132@LB@ | |@LB@5'-AUC...CCGAU CA ACGGU...CAA-3'@LB@ AGA GAUUUCAUUUUU@LB@ ||| :|||||||||||@LB@ UCU UUAAAGUAAAAA@LB@3'-UUU...CAGUU CC AAUAA...ACA-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -11.667 kcal/mol@LB@Unfolding Energy - mRNA 1.97198 kcal/mol@LB@Unfolding Energy - sRNA 1.0739 kcal/mol@LB@@LB@Position - mRNA 115 -- 131@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 34 -- 40@LB@ |
192 |
0.04008 |
0.6177 |
b2822 |
recC |
-5.02 |
0.370915 |
179 -- 195 |
44 -- 57 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________178_______________196\n_____________|_________________|\n5'-AGU...CCGAA_______U__UC_____CCGCU...AGA-3'\n______________UCGUCAG_AG__AGGAG\n______________:|||||:_||__||||:\n______________GGCAGUU_UC__UCCUU\n3'-UUU...AACCG_________________AAAGU...ACA-5'\n_____________|_________________|\n_____________58________________43\n |
179 -- 185 |
51 -- 57 |
-11.1502 kcal/mol |
3.39036 kcal/mol |
2.73756 kcal/mol |
178 196@LB@ | |@LB@5'-AGU...CCGAA U UC CCGCU...AGA-3'@LB@ UCGUCAG AG AGGAG@LB@ :|||||: || ||||:@LB@ GGCAGUU UC UCCUU@LB@3'-UUU...AACCG AAAGU...ACA-5'@LB@ | |@LB@ 58 43@LB@@LB@@LB@Energy -5.02 kcal/mol@LB@Hybridization Energy -11.1502 kcal/mol@LB@Unfolding Energy - mRNA 3.39036 kcal/mol@LB@Unfolding Energy - sRNA 2.73756 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 44 -- 57@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 51 -- 57@LB@ |
186 |
0.03879 |
0.6177 |
b2898 |
ygfZ |
-4.98 |
0.377094 |
224 -- 230 |
51 -- 57 |
iron-sulfur cluster repair protein plumbagin resistance |
|
_____________223_____231\n_____________|_______|\n5'-CGU...CCUCC_______CCUAC...CUG-3'\n______________CCGUCAG\n______________||||||:\n______________GGCAGUU\n3'-UUU...AACCG_______UCUCC...ACA-5'\n_____________|_______|\n_____________58______50\n |
224 -- 230 |
51 -- 57 |
-9.02345 kcal/mol |
1.32881 kcal/mol |
2.71582 kcal/mol |
223 231@LB@ | |@LB@5'-CGU...CCUCC CCUAC...CUG-3'@LB@ CCGUCAG@LB@ ||||||:@LB@ GGCAGUU@LB@3'-UUU...AACCG UCUCC...ACA-5'@LB@ | |@LB@ 58 50@LB@@LB@@LB@Energy -4.98 kcal/mol@LB@Hybridization Energy -9.02345 kcal/mol@LB@Unfolding Energy - mRNA 1.32881 kcal/mol@LB@Unfolding Energy - sRNA 2.71582 kcal/mol@LB@@LB@Position - mRNA 224 -- 230@LB@Position - sRNA 51 -- 57@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 51 -- 57@LB@ |
10 |
0.001925 |
0.593 |
b2910 |
zapA |
-12.97 |
0.010115 |
44 -- 65 |
38 -- 56 |
FtsZ stabilizer |
|
_____________43_____________________66\n_____________|______________________|\n5'-GUU...UUCGU______AG________A_____GAUAU...AUC-3'\n______________CGUCAA__GGAGGAAU_UUCAU\n______________||||||__:|||||||_|||||\n______________GCAGUU__UCUCCUUA_AAGUA\n3'-UUU...ACCGG______________________AAAAA...ACA-5'\n_____________|______________________|\n_____________57_____________________37\n |
53 -- 59 |
43 -- 49 |
-19.9082 kcal/mol |
5.76295 kcal/mol |
1.17918 kcal/mol |
43 66@LB@ | |@LB@5'-GUU...UUCGU AG A GAUAU...AUC-3'@LB@ CGUCAA GGAGGAAU UUCAU@LB@ |||||| :||||||| |||||@LB@ GCAGUU UCUCCUUA AAGUA@LB@3'-UUU...ACCGG AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -19.9082 kcal/mol@LB@Unfolding Energy - mRNA 5.76295 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 44 -- 65@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 43 -- 49@LB@ |