| 67 |
0.003475 |
0.1645 |
b0416 |
nusB |
-6.41 |
0.154688 |
140 -- 154 |
27 -- 40 |
transcription antitermination protein |
|
_____________139_____________155\n_____________|_______________|\n5'-AAG...UGACC__________U____AAUGU...AGU-3'\n______________GCGCUUGAAA_GAUU\n______________||:|||:|||_:|||\n______________CGUGAAUUUU_UUAA\n3'-UUU...UUCUU_______________GCAAU...CAA-5'\n_____________|_______________|\n_____________41______________26\n |
142 -- 148 |
32 -- 38 |
-12.213 kcal/mol |
4.16264 kcal/mol |
1.6425 kcal/mol |
139 155@LB@ | |@LB@5'-AAG...UGACC U AAUGU...AGU-3'@LB@ GCGCUUGAAA GAUU@LB@ ||:|||:||| :|||@LB@ CGUGAAUUUU UUAA@LB@3'-UUU...UUCUU GCAAU...CAA-5'@LB@ | |@LB@ 41 26@LB@@LB@@LB@Energy -6.41 kcal/mol@LB@Hybridization Energy -12.213 kcal/mol@LB@Unfolding Energy - mRNA 4.16264 kcal/mol@LB@Unfolding Energy - sRNA 1.6425 kcal/mol@LB@@LB@Position - mRNA 140 -- 154@LB@Position - sRNA 27 -- 40@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 113 |
0.009602 |
0.2693 |
b3237 |
argR |
-14.05 |
0.000763 |
205 -- 250 |
27 -- 60 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________204_____________________________________________251\n_____________|_______________________________________________|\n5'-ACA...UAUGC______CG____________AGAACUAGUUAA___________C___ACUUA...UGC-3'\n______________GAAGCU__GC_UAAGCAAGA____________AGCAUUUAAAG_AUU\n______________|||:||__||_|||||||||____________||||:|||||:_|||\n______________CUUUGA__CG_AUUCGUUCU____________UCGUGAAUUUU_UAA\n3'-UUU...CCCUA______A___A________________________________U___GCAAU...CAA-5'\n_____________|_______________________________________________|\n_____________61______________________________________________26\n |
238 -- 244 |
33 -- 39 |
-28.1986 kcal/mol |
7.87477 kcal/mol |
6.27096 kcal/mol |
204 251@LB@ | |@LB@5'-ACA...UAUGC CG AGAACUAGUUAA C ACUUA...UGC-3'@LB@ GAAGCU GC UAAGCAAGA AGCAUUUAAAG AUU@LB@ |||:|| || ||||||||| ||||:|||||: |||@LB@ CUUUGA CG AUUCGUUCU UCGUGAAUUUU UAA@LB@3'-UUU...CCCUA A A U GCAAU...CAA-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -28.1986 kcal/mol@LB@Unfolding Energy - mRNA 7.87477 kcal/mol@LB@Unfolding Energy - sRNA 6.27096 kcal/mol@LB@@LB@Position - mRNA 205 -- 250@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 114 |
0.009652 |
0.2693 |
b2614 |
grpE |
-8.47 |
0.044767 |
262 -- 275 |
27 -- 41 |
heat shock protein |
|
_____________261_____________276\n_____________|_______________|\n5'-GAG...GGAUC_____G_________GAGGC...CUG-3'\n______________AGCAC__AAGAGAUU\n______________|||||__||:|:|||\n______________UCGUG__UUUUUUAA\n3'-UUU...GUUCU_____AA________GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
269 -- 275 |
27 -- 33 |
-11.1078 kcal/mol |
0.992631 kcal/mol |
1.6427 kcal/mol |
261 276@LB@ | |@LB@5'-GAG...GGAUC G GAGGC...CUG-3'@LB@ AGCAC AAGAGAUU@LB@ ||||| ||:|:|||@LB@ UCGUG UUUUUUAA@LB@3'-UUU...GUUCU AA GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -11.1078 kcal/mol@LB@Unfolding Energy - mRNA 0.992631 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 262 -- 275@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 75 |
0.004391 |
0.1886 |
b3708 |
tnaA |
-6.02 |
0.191179 |
273 -- 300 |
28 -- 53 |
tryptophanase/L-cysteine desulfhydrase PLP-dependent |
|
_____________272_________________________300\n_____________|___________________________|\n5'-ACC...CUCGC_____UC__G________A___UU____-3'\n______________GCUUA__GU_AAGAGGCA_UUA__AAAU\n______________|||||__|:_||||:|||_|||__||||\n______________CGAAU__CG_UUCUUCGU_AAU__UUUA\n3'-UUU...UUGAA_____U____________G___UU____AGCAA...CAA-5'\n_____________|____________________________|\n_____________54___________________________27\n |
284 -- 290 |
38 -- 44 |
-17.9242 kcal/mol |
5.66853 kcal/mol |
6.23468 kcal/mol |
272 300@LB@ | |@LB@5'-ACC...CUCGC UC G A UU -3'@LB@ GCUUA GU AAGAGGCA UUA AAAU@LB@ ||||| |: ||||:||| ||| ||||@LB@ CGAAU CG UUCUUCGU AAU UUUA@LB@3'-UUU...UUGAA U G UU AGCAA...CAA-5'@LB@ | |@LB@ 54 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -17.9242 kcal/mol@LB@Unfolding Energy - mRNA 5.66853 kcal/mol@LB@Unfolding Energy - sRNA 6.23468 kcal/mol@LB@@LB@Position - mRNA 273 -- 300@LB@Position - sRNA 28 -- 53@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 87 |
0.005861 |
0.217 |
b3083 |
higB |
-4.01 |
0.492619 |
220 -- 233 |
28 -- 42 |
mRNA interferase toxin of the HigB-HigA toxin-antitoxin system |
|
_____________219_____________234\n_____________|_______________|\n5'-GCA...UCAAA_______________GCUGC...GAU-3'\n______________AAGCAUU_GAAAGAU\n______________|||||:|_:|||:||\n______________UUCGUGA_UUUUUUA\n3'-UUU...CGUUC_______A_______AGCAA...CAA-5'\n_____________|_______________|\n_____________43______________27\n |
220 -- 226 |
36 -- 42 |
-9.16043 kcal/mol |
3.51035 kcal/mol |
1.63711 kcal/mol |
219 234@LB@ | |@LB@5'-GCA...UCAAA GCUGC...GAU-3'@LB@ AAGCAUU GAAAGAU@LB@ |||||:| :|||:||@LB@ UUCGUGA UUUUUUA@LB@3'-UUU...CGUUC A AGCAA...CAA-5'@LB@ | |@LB@ 43 27@LB@@LB@@LB@Energy -4.01 kcal/mol@LB@Hybridization Energy -9.16043 kcal/mol@LB@Unfolding Energy - mRNA 3.51035 kcal/mol@LB@Unfolding Energy - sRNA 1.63711 kcal/mol@LB@@LB@Position - mRNA 220 -- 233@LB@Position - sRNA 28 -- 42@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 88 |
0.006209 |
0.2266 |
b1643 |
ydhI |
-11.55 |
0.005389 |
141 -- 153 |
28 -- 40 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________140___________154\n_____________|_____________|\n5'-UUU...UUUUC_____________AUUUA...GAU-3'\n______________GCACUUAAAGAAU\n______________|||||||||:|||\n______________CGUGAAUUUUUUA\n3'-UUU...UUCUU_____________AGCAA...CAA-5'\n_____________|_____________|\n_____________41____________27\n |
144 -- 150 |
31 -- 37 |
-15.2864 kcal/mol |
2.10141 kcal/mol |
1.63611 kcal/mol |
140 154@LB@ | |@LB@5'-UUU...UUUUC AUUUA...GAU-3'@LB@ GCACUUAAAGAAU@LB@ |||||||||:|||@LB@ CGUGAAUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -15.2864 kcal/mol@LB@Unfolding Energy - mRNA 2.10141 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 141 -- 153@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 89 |
0.006302 |
0.2266 |
b3208 |
mtgA |
-4.90 |
0.336213 |
28 -- 47 |
28 -- 47 |
biosynthetic peptidoglycan transglycosylase |
|
_____________27____________________48\n_____________|_____________________|\n5'-UUG...AUACC____________GG_______GGGCG...UGU-3'\n______________GC_AGAAGUGCU__AAGAGAU\n______________||_|||||::||__||:|:||\n______________CG_UCUUCGUGA__UUUUUUA\n3'-UUU...GAAUU__U_________A________AGCAA...CAA-5'\n_____________|_____________________|\n_____________48____________________27\n |
32 -- 38 |
36 -- 42 |
-15.6239 kcal/mol |
4.50128 kcal/mol |
6.22212 kcal/mol |
27 48@LB@ | |@LB@5'-UUG...AUACC GG GGGCG...UGU-3'@LB@ GC AGAAGUGCU AAGAGAU@LB@ || |||||::|| ||:|:||@LB@ CG UCUUCGUGA UUUUUUA@LB@3'-UUU...GAAUU U A AGCAA...CAA-5'@LB@ | |@LB@ 48 27@LB@@LB@@LB@Energy -4.90 kcal/mol@LB@Hybridization Energy -15.6239 kcal/mol@LB@Unfolding Energy - mRNA 4.50128 kcal/mol@LB@Unfolding Energy - sRNA 6.22212 kcal/mol@LB@@LB@Position - mRNA 28 -- 47@LB@Position - sRNA 28 -- 47@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 172 |
0.01959 |
0.3668 |
b0336 |
codB |
-6.02 |
0.190787 |
88 -- 108 |
28 -- 40 |
cytosine transporter |
|
_____________87____________________109\n_____________|_____________________|\n5'-CCA...UUUUU_____CAUUCAUA________AUAUU...UUU-3'\n______________GCACU________UAAAAAAU\n______________|||||________||||||||\n______________CGUGA________AUUUUUUA\n3'-UUU...UUCUU_____________________AGCAA...CAA-5'\n_____________|_____________________|\n_____________41____________________27\n |
102 -- 108 |
28 -- 34 |
-8.50412 kcal/mol |
0.843154 kcal/mol |
1.63611 kcal/mol |
87 109@LB@ | |@LB@5'-CCA...UUUUU CAUUCAUA AUAUU...UUU-3'@LB@ GCACU UAAAAAAU@LB@ ||||| ||||||||@LB@ CGUGA AUUUUUUA@LB@3'-UUU...UUCUU AGCAA...CAA-5'@LB@ | |@LB@ 41 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -8.50412 kcal/mol@LB@Unfolding Energy - mRNA 0.843154 kcal/mol@LB@Unfolding Energy - sRNA 1.63611 kcal/mol@LB@@LB@Position - mRNA 88 -- 108@LB@Position - sRNA 28 -- 40@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 23 |
0.000685 |
0.09021 |
b3780 |
rhlB |
-7.99 |
0.060609 |
254 -- 278 |
29 -- 60 |
ATP-dependent RNA helicase |
|
_____________253______________________________279\n_____________|________________________________|\n5'-UCG...CAUCC____G_________________C_________AAAGG...CGC-3'\n______________GAAG_UUGU_______AGAAGC_CUUGAAAAA\n______________|||:_|||:_______||||||_|||:|||||\n______________CUUU_AACG_______UCUUCG_GAAUUUUUU\n3'-UUU...CCCUA____G____AAUUCGU______U_________AAGCA...CAA-5'\n_____________|________________________________|\n_____________61_______________________________28\n |
270 -- 276 |
31 -- 37 |
-19.7636 kcal/mol |
5.50064 kcal/mol |
6.27092 kcal/mol |
253 279@LB@ | |@LB@5'-UCG...CAUCC G C AAAGG...CGC-3'@LB@ GAAG UUGU AGAAGC CUUGAAAAA@LB@ |||: |||: |||||| |||:|||||@LB@ CUUU AACG UCUUCG GAAUUUUUU@LB@3'-UUU...CCCUA G AAUUCGU U AAGCA...CAA-5'@LB@ | |@LB@ 61 28@LB@@LB@@LB@Energy -7.99 kcal/mol@LB@Hybridization Energy -19.7636 kcal/mol@LB@Unfolding Energy - mRNA 5.50064 kcal/mol@LB@Unfolding Energy - sRNA 6.27092 kcal/mol@LB@@LB@Position - mRNA 254 -- 278@LB@Position - sRNA 29 -- 60@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 74 |
0.004124 |
0.1795 |
b2599 |
pheA |
-8.54 |
0.042758 |
34 -- 48 |
29 -- 42 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________33______________49\n_____________|_______________|\n5'-UGA...UACUA___U___________ACAAA...UCG-3'\n______________AAG_CACUUAAGGAA\n______________|||_|||||||::||\n______________UUC_GUGAAUUUUUU\n3'-UUU...CGUUC_______________AAGCA...CAA-5'\n_____________|_______________|\n_____________43______________28\n |
42 -- 48 |
29 -- 35 |
-11.0993 kcal/mol |
0.931405 kcal/mol |
1.62369 kcal/mol |
33 49@LB@ | |@LB@5'-UGA...UACUA U ACAAA...UCG-3'@LB@ AAG CACUUAAGGAA@LB@ ||| |||||||::||@LB@ UUC GUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -11.0993 kcal/mol@LB@Unfolding Energy - mRNA 0.931405 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 34 -- 48@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 29 -- 35@LB@ |
