| 69 |
0.00357 |
0.1645 |
b0571 |
cusR |
-5.90 |
0.203942 |
86 -- 99 |
6 -- 21 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________85_______________100\n_____________|________________|\n5'-AGC...UUACU_______C________UUUCC...GGC-3'\n______________CGCCAGG___UCUGAU\n______________|:|||||___||||||\n______________GUGGUCC___AGACUA\n3'-UUU...GCAAU_______UUU______CACAA-5'\n_____________|________________|\n_____________22_______________5\n |
86 -- 92 |
15 -- 21 |
-18.4182 kcal/mol |
4.95815 kcal/mol |
7.56001 kcal/mol |
85 100@LB@ | |@LB@5'-AGC...UUACU C UUUCC...GGC-3'@LB@ CGCCAGG UCUGAU@LB@ |:||||| ||||||@LB@ GUGGUCC AGACUA@LB@3'-UUU...GCAAU UUU CACAA-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -18.4182 kcal/mol@LB@Unfolding Energy - mRNA 4.95815 kcal/mol@LB@Unfolding Energy - sRNA 7.56001 kcal/mol@LB@@LB@Position - mRNA 86 -- 99@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 129 |
0.01228 |
0.3033 |
b2249 |
yfaY |
-6.27 |
0.166554 |
88 -- 102 |
6 -- 22 |
inactive PncC family protein |
|
_____________87________________103\n_____________|_________________|\n5'-UUG...GGUUA_______UU________CCCUU...AGG-3'\n______________ACGCCAG____UCUGAU\n______________||:||||____||||||\n______________UGUGGUC____AGACUA\n3'-UUU...AGCAA_______CUUU______CACAA-5'\n_____________|_________________|\n_____________23________________5\n |
88 -- 94 |
16 -- 22 |
-16.5501 kcal/mol |
2.71406 kcal/mol |
7.56159 kcal/mol |
87 103@LB@ | |@LB@5'-UUG...GGUUA UU CCCUU...AGG-3'@LB@ ACGCCAG UCUGAU@LB@ ||:|||| ||||||@LB@ UGUGGUC AGACUA@LB@3'-UUU...AGCAA CUUU CACAA-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -16.5501 kcal/mol@LB@Unfolding Energy - mRNA 2.71406 kcal/mol@LB@Unfolding Energy - sRNA 7.56159 kcal/mol@LB@@LB@Position - mRNA 88 -- 102@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 12 |
0.0001753 |
0.04706 |
b3676 |
yidH |
-12.46 |
0.002725 |
279 -- 300 |
7 -- 26 |
DUF202 family inner membrane protein |
|
_____________278___________________300\n_____________|_____________________|\n5'-GCC...GGAUC___AC__________UU_____-3'\n______________CGU__UGCACUAGGA__UCUGG\n______________|||__|:|||:||||__||||:\n______________GCA__AUGUGGUCCU__AGACU\n3'-UUU...UUUAA_______________UU_____ACACAA-5'\n_____________|______________________|\n_____________27_____________________6\n |
286 -- 292 |
15 -- 21 |
-23.8048 kcal/mol |
2.98352 kcal/mol |
8.36616 kcal/mol |
278 300@LB@ | |@LB@5'-GCC...GGAUC AC UU -3'@LB@ CGU UGCACUAGGA UCUGG@LB@ ||| |:|||:|||| ||||:@LB@ GCA AUGUGGUCCU AGACU@LB@3'-UUU...UUUAA UU ACACAA-5'@LB@ | |@LB@ 27 6@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -23.8048 kcal/mol@LB@Unfolding Energy - mRNA 2.98352 kcal/mol@LB@Unfolding Energy - sRNA 8.36616 kcal/mol@LB@@LB@Position - mRNA 279 -- 300@LB@Position - sRNA 7 -- 26@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 25 |
0.0007384 |
0.09021 |
b3434 |
yhgN |
-11.94 |
0.004015 |
159 -- 197 |
7 -- 41 |
UPF0056 family inner membrane protein |
|
_____________158_____________________________________198\n_____________|_______________________________________|\n5'-UUU...UUGUU_____GC_______CCG__GCAAU_______________GUUAU...CGA-3'\n______________AGCAC__AGAAAGU___CG_____UAUCAGGGAAUUUGA\n______________|||||__|:|||:|___||_____:|:||||:|||:|||\n______________UCGUG__UUUUUUA___GC_____GUGGUCCUUUAGACU\n3'-UUU...GUUCU_____AA_______A____AAU_________________ACACAA-5'\n_____________|_______________________________________|\n_____________42______________________________________6\n |
188 -- 194 |
10 -- 16 |
-30.001 kcal/mol |
8.83552 kcal/mol |
9.22092 kcal/mol |
158 198@LB@ | |@LB@5'-UUU...UUGUU GC CCG GCAAU GUUAU...CGA-3'@LB@ AGCAC AGAAAGU CG UAUCAGGGAAUUUGA@LB@ ||||| |:|||:| || :|:||||:|||:|||@LB@ UCGUG UUUUUUA GC GUGGUCCUUUAGACU@LB@3'-UUU...GUUCU AA A AAU ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -11.94 kcal/mol@LB@Hybridization Energy -30.001 kcal/mol@LB@Unfolding Energy - mRNA 8.83552 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 159 -- 197@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 46 |
0.002046 |
0.1433 |
b3106 |
yhaK |
-10.10 |
0.015122 |
97 -- 120 |
7 -- 28 |
redox-sensitive bicupin |
|
_____________96_______________________121\n_____________|________________________|\n5'-UCC...GCCAU______CU__U_____________ACAUA...AAU-3'\n______________UUCGUU__CA_UCAGGAAAUUUGA\n______________||||||__||_:||||||||:|||\n______________AAGCAA__GU_GGUCCUUUAGACU\n3'-UUU...UUUUU______U_________________ACACAA-5'\n_____________|________________________|\n_____________29_______________________6\n |
111 -- 117 |
10 -- 16 |
-23.1033 kcal/mol |
4.40095 kcal/mol |
8.59864 kcal/mol |
96 121@LB@ | |@LB@5'-UCC...GCCAU CU U ACAUA...AAU-3'@LB@ UUCGUU CA UCAGGAAAUUUGA@LB@ |||||| || :||||||||:|||@LB@ AAGCAA GU GGUCCUUUAGACU@LB@3'-UUU...UUUUU U ACACAA-5'@LB@ | |@LB@ 29 6@LB@@LB@@LB@Energy -10.10 kcal/mol@LB@Hybridization Energy -23.1033 kcal/mol@LB@Unfolding Energy - mRNA 4.40095 kcal/mol@LB@Unfolding Energy - sRNA 8.59864 kcal/mol@LB@@LB@Position - mRNA 97 -- 120@LB@Position - sRNA 7 -- 28@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 65 |
0.003382 |
0.1645 |
b1739 |
osmE |
-4.35 |
0.428849 |
173 -- 228 |
7 -- 58 |
osmotically-inducible lipoprotein |
|
_____________172______________________________________________________229\n_____________|________________________________________________________|\n5'-GAA...UAUCU___AC___GA___A_______A__GAAUAUGAACAAGAA____G______U_____GUGCA...AGC-3'\n______________AAC__GCU__UAA_CAAGAGG_CG_______________UAUG_CAGGAA_UCUGA\n______________|||__|||__|||_|||||:|_|:_______________||::_||||||_|||||\n______________UUG__CGA__AUU_GUUCUUC_GU_______________AUGU_GUCCUU_AGACU\n3'-UUU...CUACU___AA________C__________GAAUUUUUUAAGCA_____G______U_____ACACAA-5'\n_____________|________________________________________________________|\n_____________59_______________________________________________________6\n |
187 -- 193 |
40 -- 46 |
-28.7812 kcal/mol |
10.5809 kcal/mol |
13.8467 kcal/mol |
172 229@LB@ | |@LB@5'-GAA...UAUCU AC GA A A GAAUAUGAACAAGAA G U GUGCA...AGC-3'@LB@ AAC GCU UAA CAAGAGG CG UAUG CAGGAA UCUGA@LB@ ||| ||| ||| |||||:| |: ||:: |||||| |||||@LB@ UUG CGA AUU GUUCUUC GU AUGU GUCCUU AGACU@LB@3'-UUU...CUACU AA C GAAUUUUUUAAGCA G U ACACAA-5'@LB@ | |@LB@ 59 6@LB@@LB@@LB@Energy -4.35 kcal/mol@LB@Hybridization Energy -28.7812 kcal/mol@LB@Unfolding Energy - mRNA 10.5809 kcal/mol@LB@Unfolding Energy - sRNA 13.8467 kcal/mol@LB@@LB@Position - mRNA 173 -- 228@LB@Position - sRNA 7 -- 58@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 106 |
0.009044 |
0.2693 |
b3360 |
pabA |
-9.65 |
0.020637 |
134 -- 165 |
7 -- 41 |
aminodeoxychorismate synthase subunit II |
|
_____________133_________________________________166\n_____________|___________________________________|\n5'-GCG...UAUUU____AAGUGGUAAG___AA________________GUAAA...CGU-3'\n______________AGCA___________CG____GCCGGGGAAUCUGA\n______________||||___________||____:||:||:|||||||\n______________UCGU___________GC____UGGUCCUUUAGACU\n3'-UUU...GUUCU____GAAUUUUUUAA__AAUG______________ACACAA-5'\n_____________|___________________________________|\n_____________42__________________________________6\n |
156 -- 162 |
10 -- 16 |
-26.3396 kcal/mol |
7.46958 kcal/mol |
9.22092 kcal/mol |
133 166@LB@ | |@LB@5'-GCG...UAUUU AAGUGGUAAG AA GUAAA...CGU-3'@LB@ AGCA CG GCCGGGGAAUCUGA@LB@ |||| || :||:||:|||||||@LB@ UCGU GC UGGUCCUUUAGACU@LB@3'-UUU...GUUCU GAAUUUUUUAA AAUG ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -9.65 kcal/mol@LB@Hybridization Energy -26.3396 kcal/mol@LB@Unfolding Energy - mRNA 7.46958 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 134 -- 165@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 118 |
0.009927 |
0.271 |
b1654 |
grxD |
-11.37 |
0.006167 |
180 -- 241 |
7 -- 60 |
glutaredoxin-4 |
|
_____________179_______________________________________________________________242\n_____________|_________________________________________________________________|\n5'-AAA...GUAAA________AGG________CAAUG_____CACUAUCG_______C_A_________AUUG_____AAACC...CUG-3'\n______________GAAGUUUG___AAGCAAGA_____AGCAC________AAAAAAU_C___ACGCCAG_____CUGA\n______________|||::|||___||||||||_____|||||________|||||||_|___||:||||_____||||\n______________CUUUGAAC___UUCGUUCU_____UCGUG________UUUUUUA_G___UGUGGUC_____GACU\n3'-UUU...CCCUA________GAA__________________AA_____________A_CAA_______CUUUA____ACACAA-5'\n_____________|_________________________________________________________________|\n_____________61________________________________________________________________6\n |
227 -- 233 |
16 -- 22 |
-34.247 kcal/mol |
9.03509 kcal/mol |
13.8468 kcal/mol |
179 242@LB@ | |@LB@5'-AAA...GUAAA AGG CAAUG CACUAUCG C A AUUG AAACC...CUG-3'@LB@ GAAGUUUG AAGCAAGA AGCAC AAAAAAU C ACGCCAG CUGA@LB@ |||::||| |||||||| ||||| ||||||| | ||:|||| ||||@LB@ CUUUGAAC UUCGUUCU UCGUG UUUUUUA G UGUGGUC GACU@LB@3'-UUU...CCCUA GAA AA A CAA CUUUA ACACAA-5'@LB@ | |@LB@ 61 6@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -34.247 kcal/mol@LB@Unfolding Energy - mRNA 9.03509 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 180 -- 241@LB@Position - sRNA 7 -- 60@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 21 |
0.000535 |
0.08206 |
b1639 |
mliC |
-10.27 |
0.013452 |
27 -- 40 |
8 -- 21 |
inhibitor of c-type lysozyme membrane-bound; putative lipoprotein |
|
_____________26_____________41\n_____________|______________|\n5'-GCU...GGGAU______________CCUUC...UGG-3'\n______________UACCAGGAAAUCUG\n______________:|||||||||||||\n______________GUGGUCCUUUAGAC\n3'-UUU...GCAAU______________UACACAA-5'\n_____________|______________|\n_____________22_____________7\n |
32 -- 38 |
10 -- 16 |
-22.0821 kcal/mol |
4.25106 kcal/mol |
7.55865 kcal/mol |
26 41@LB@ | |@LB@5'-GCU...GGGAU CCUUC...UGG-3'@LB@ UACCAGGAAAUCUG@LB@ :|||||||||||||@LB@ GUGGUCCUUUAGAC@LB@3'-UUU...GCAAU UACACAA-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -22.0821 kcal/mol@LB@Unfolding Energy - mRNA 4.25106 kcal/mol@LB@Unfolding Energy - sRNA 7.55865 kcal/mol@LB@@LB@Position - mRNA 27 -- 40@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 178 |
0.02074 |
0.3753 |
b4324 |
uxuR |
-9.92 |
0.017203 |
196 -- 210 |
8 -- 22 |
fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor |
|
_____________195_____________211\n_____________|_______________|\n5'-UAC...ACACA______U________CCACC...UGC-3'\n______________ACACCA_GAAAUCUG\n______________||||||_||||||||\n______________UGUGGU_CUUUAGAC\n3'-UUU...AGCAA______C________UACACAA-5'\n_____________|_______________|\n_____________23______________7\n |
203 -- 209 |
9 -- 15 |
-19.4171 kcal/mol |
1.94047 kcal/mol |
7.56026 kcal/mol |
195 211@LB@ | |@LB@5'-UAC...ACACA U CCACC...UGC-3'@LB@ ACACCA GAAAUCUG@LB@ |||||| ||||||||@LB@ UGUGGU CUUUAGAC@LB@3'-UUU...AGCAA C UACACAA-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -19.4171 kcal/mol@LB@Unfolding Energy - mRNA 1.94047 kcal/mol@LB@Unfolding Energy - sRNA 7.56026 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
