| 1 |
0 |
0 |
b0481 |
ybaK |
-91.37 |
0.000000 |
1 -- 79 |
1 -- 79 |
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________AACUC...UCG-3'\n______________AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA\n______3'-UUUUU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
51 -- 57 |
23 -- 29 |
-143.199 kcal/mol |
26.5504 kcal/mol |
25.2758 kcal/mol |
1 80@LB@ | |@LB@ 5'- AACUC...UCG-3'@LB@ AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA@LB@ 3'-UUUUU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -91.37 kcal/mol@LB@Hybridization Energy -143.199 kcal/mol@LB@Unfolding Energy - mRNA 26.5504 kcal/mol@LB@Unfolding Energy - sRNA 25.2758 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 2 |
6.241e-06 |
0.01004 |
b1737 |
chbC |
-18.35 |
0.000789 |
134 -- 152 |
38 -- 56 |
N N'-diacetylchitobiose-specific enzyme IIC component of PTS |
|
_____________133_________________153\n_____________|___________________|\n5'-GUU...UUUCC__________UU_______AAAUC...UUC-3'\n______________CGUCAAAGAG__AUUUCAU\n______________||||||||||__|||||||\n______________GCAGUUUCUC__UAAAGUA\n3'-UUU...ACCGG__________CU_______AAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________37\n |
146 -- 152 |
38 -- 44 |
-21.3647 kcal/mol |
1.83077 kcal/mol |
1.17918 kcal/mol |
133 153@LB@ | |@LB@5'-GUU...UUUCC UU AAAUC...UUC-3'@LB@ CGUCAAAGAG AUUUCAU@LB@ |||||||||| |||||||@LB@ GCAGUUUCUC UAAAGUA@LB@3'-UUU...ACCGG CU AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -18.35 kcal/mol@LB@Hybridization Energy -21.3647 kcal/mol@LB@Unfolding Energy - mRNA 1.83077 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 134 -- 152@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 3 |
9.453e-06 |
0.01014 |
b0681 |
chiP |
-16.40 |
0.001982 |
182 -- 193 |
45 -- 56 |
chitoporin uptake of chitosugars |
|
_____________181__________194\n_____________|____________|\n5'-CUU...UUAUA____________UUAAC...AAG-3'\n______________CGUCAAAGAGGA\n______________||||||||||||\n______________GCAGUUUCUCCU\n3'-UUU...ACCGG____________UAAAG...ACA-5'\n_____________|____________|\n_____________57___________44\n |
187 -- 193 |
45 -- 51 |
-19.4659 kcal/mol |
2.1233 kcal/mol |
0.938337 kcal/mol |
181 194@LB@ | |@LB@5'-CUU...UUAUA UUAAC...AAG-3'@LB@ CGUCAAAGAGGA@LB@ ||||||||||||@LB@ GCAGUUUCUCCU@LB@3'-UUU...ACCGG UAAAG...ACA-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -19.4659 kcal/mol@LB@Unfolding Energy - mRNA 2.1233 kcal/mol@LB@Unfolding Energy - sRNA 0.938337 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 4 |
0.0002658 |
0.2138 |
b1040 |
csgD |
-11.06 |
0.024985 |
185 -- 199 |
38 -- 52 |
csgBAC operon transcriptional regulator |
|
_____________184_____________200\n_____________|_______________|\n5'-UUA...UAAAA____C__________CAUGU...CGC-3'\n______________AAAG_GGGGUUUCAU\n______________||||_||::||||||\n______________UUUC_CCUUAAAGUA\n3'-UUU...GGCAG____U__________AAAAA...ACA-5'\n_____________|_______________|\n_____________53______________37\n |
193 -- 199 |
38 -- 44 |
-14.3947 kcal/mol |
2.26766 kcal/mol |
1.0693 kcal/mol |
184 200@LB@ | |@LB@5'-UUA...UAAAA C CAUGU...CGC-3'@LB@ AAAG GGGGUUUCAU@LB@ |||| ||::||||||@LB@ UUUC CCUUAAAGUA@LB@3'-UUU...GGCAG U AAAAA...ACA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -14.3947 kcal/mol@LB@Unfolding Energy - mRNA 2.26766 kcal/mol@LB@Unfolding Energy - sRNA 1.0693 kcal/mol@LB@@LB@Position - mRNA 185 -- 199@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 5 |
0.0004437 |
0.2856 |
b0847 |
ybjL |
-12.50 |
0.012601 |
224 -- 253 |
26 -- 55 |
putative transporter |
|
_____________223____________________________254\n_____________|______________________________|\n5'-CUU...GAAUU______U_______A____CUG________UGUGG...GUU-3'\n______________GUUAAA_GGGAAUU_CAUU___UUAUUAUU\n______________||:|||_:||||||_||||___||||||||\n______________CAGUUU_UCCUUAA_GUAA___AAUAAUAA\n3'-UUU...CCGGG______C_______A____AAA________UACGG...ACA-5'\n_____________|______________________________|\n_____________56_____________________________25\n |
247 -- 253 |
26 -- 32 |
-19.6848 kcal/mol |
5.99374 kcal/mol |
1.18815 kcal/mol |
223 254@LB@ | |@LB@5'-CUU...GAAUU U A CUG UGUGG...GUU-3'@LB@ GUUAAA GGGAAUU CAUU UUAUUAUU@LB@ ||:||| :|||||| |||| ||||||||@LB@ CAGUUU UCCUUAA GUAA AAUAAUAA@LB@3'-UUU...CCGGG C A AAA UACGG...ACA-5'@LB@ | |@LB@ 56 25@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -19.6848 kcal/mol@LB@Unfolding Energy - mRNA 5.99374 kcal/mol@LB@Unfolding Energy - sRNA 1.18815 kcal/mol@LB@@LB@Position - mRNA 224 -- 253@LB@Position - sRNA 26 -- 55@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 6 |
0.0006545 |
0.351 |
b1857 |
znuA |
-11.78 |
0.017745 |
58 -- 67 |
45 -- 54 |
zinc ABC transporter periplasmic binding protein |
|
_____________57_________68\n_____________|__________|\n5'-GCG...ACACA__________CGCGG...AAC-3'\n______________UCAGAGAGGA\n______________|||:||||||\n______________AGUUUCUCCU\n3'-UUU...CGGGC__________UAAAG...ACA-5'\n_____________|__________|\n_____________55_________44\n |
61 -- 67 |
45 -- 51 |
-14.7441 kcal/mol |
2.03423 kcal/mol |
0.929144 kcal/mol |
57 68@LB@ | |@LB@5'-GCG...ACACA CGCGG...AAC-3'@LB@ UCAGAGAGGA@LB@ |||:||||||@LB@ AGUUUCUCCU@LB@3'-UUU...CGGGC UAAAG...ACA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -14.7441 kcal/mol@LB@Unfolding Energy - mRNA 2.03423 kcal/mol@LB@Unfolding Energy - sRNA 0.929144 kcal/mol@LB@@LB@Position - mRNA 58 -- 67@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 7 |
0.001184 |
0.5444 |
b0817 |
mntR |
-11.99 |
0.016054 |
285 -- 294 |
46 -- 55 |
Mn(2+)-responsive manganese regulon transcriptional regulator |
|
_____________284________295\n_____________|__________|\n5'-CUU...GCCAG__________CGCAUC-3'\n______________GUCAGAGAGG\n______________||||:|||||\n______________CAGUUUCUCC\n3'-UUU...CCGGG__________UUAAA...ACA-5'\n_____________|__________|\n_____________56_________45\n |
288 -- 294 |
46 -- 52 |
-16.1275 kcal/mol |
3.21103 kcal/mol |
0.924411 kcal/mol |
284 295@LB@ | |@LB@5'-CUU...GCCAG CGCAUC-3'@LB@ GUCAGAGAGG@LB@ ||||:|||||@LB@ CAGUUUCUCC@LB@3'-UUU...CCGGG UUAAA...ACA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -16.1275 kcal/mol@LB@Unfolding Energy - mRNA 3.21103 kcal/mol@LB@Unfolding Energy - sRNA 0.924411 kcal/mol@LB@@LB@Position - mRNA 285 -- 294@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 8 |
0.001474 |
0.5928 |
b1048 |
opgG |
-11.67 |
0.018726 |
159 -- 168 |
44 -- 53 |
OPG biosynthetic periplasmic beta-1 6 branching glycosyltransferase |
|
_____________158________169\n_____________|__________|\n5'-ACA...GCACA__________AGUGC...AAU-3'\n______________CAAAGGGGGA\n______________|||||:||:|\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
162 -- 168 |
44 -- 50 |
-12.9473 kcal/mol |
0.352192 kcal/mol |
0.927997 kcal/mol |
158 169@LB@ | |@LB@5'-ACA...GCACA AGUGC...AAU-3'@LB@ CAAAGGGGGA@LB@ |||||:||:|@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -12.9473 kcal/mol@LB@Unfolding Energy - mRNA 0.352192 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 159 -- 168@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 9 |
0.001801 |
0.593 |
b1276 |
acnA |
-10.22 |
0.037037 |
184 -- 198 |
44 -- 55 |
aconitate hydratase 1; aconitase A |
|
_____________183_____________199\n_____________|_______________|\n5'-CUU...ACCCU____UUA________CUAUG...GCG-3'\n______________GUCA___AGGAGGAG\n______________||||___|:|||||:\n______________CAGU___UUCUCCUU\n3'-UUU...CCGGG_______________AAAGU...ACA-5'\n_____________|_______________|\n_____________56______________43\n |
192 -- 198 |
44 -- 50 |
-13.3918 kcal/mol |
2.22696 kcal/mol |
0.941432 kcal/mol |
183 199@LB@ | |@LB@5'-CUU...ACCCU UUA CUAUG...GCG-3'@LB@ GUCA AGGAGGAG@LB@ |||| |:|||||:@LB@ CAGU UUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -13.3918 kcal/mol@LB@Unfolding Energy - mRNA 2.22696 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 184 -- 198@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 10 |
0.001925 |
0.593 |
b2910 |
zapA |
-12.97 |
0.010115 |
44 -- 65 |
38 -- 56 |
FtsZ stabilizer |
|
_____________43_____________________66\n_____________|______________________|\n5'-GUU...UUCGU______AG________A_____GAUAU...AUC-3'\n______________CGUCAA__GGAGGAAU_UUCAU\n______________||||||__:|||||||_|||||\n______________GCAGUU__UCUCCUUA_AAGUA\n3'-UUU...ACCGG______________________AAAAA...ACA-5'\n_____________|______________________|\n_____________57_____________________37\n |
53 -- 59 |
43 -- 49 |
-19.9082 kcal/mol |
5.76295 kcal/mol |
1.17918 kcal/mol |
43 66@LB@ | |@LB@5'-GUU...UUCGU AG A GAUAU...AUC-3'@LB@ CGUCAA GGAGGAAU UUCAU@LB@ |||||| :||||||| |||||@LB@ GCAGUU UCUCCUUA AAGUA@LB@3'-UUU...ACCGG AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -19.9082 kcal/mol@LB@Unfolding Energy - mRNA 5.76295 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 44 -- 65@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 43 -- 49@LB@ |
