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CopraRNA 1765463

Input and runtime details for job 1765463 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 1765463 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:41:59 CET 2018
?CopraRNA Started@ Fri Feb 16 15:42:13 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 19:57:45 CET 2018
?Post-Processing Finished@ Fri Feb 16 19:57:53 CET 2018
?Job Completed@ Fri Feb 16 19:58:19 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=1765463&toolName=CopraRNA ( 30 days expiry )

Description of the job

5 ChiX sequences

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b0481 ybaK -91.37 0.000000 1 -- 79 1 -- 79 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase  
2 6.241e-06 0.01004 b1737 chbC -18.35 0.000789 134 -- 152 38 -- 56 N N'-diacetylchitobiose-specific enzyme IIC component of PTS  
3 9.453e-06 0.01014 b0681 chiP -16.40 0.001982 182 -- 193 45 -- 56 chitoporin uptake of chitosugars  
4 0.0002658 0.2138 b1040 csgD -11.06 0.024985 185 -- 199 38 -- 52 csgBAC operon transcriptional regulator  
5 0.0004437 0.2856 b0847 ybjL -12.50 0.012601 224 -- 253 26 -- 55 putative transporter  
6 0.0006545 0.351 b1857 znuA -11.78 0.017745 58 -- 67 45 -- 54 zinc ABC transporter periplasmic binding protein  
7 0.001184 0.5444 b0817 mntR -11.99 0.016054 285 -- 294 46 -- 55 Mn(2+)-responsive manganese regulon transcriptional regulator  
8 0.001474 0.5928 b1048 opgG -11.67 0.018726 159 -- 168 44 -- 53 OPG biosynthetic periplasmic beta-1 6 branching glycosyltransferase  
9 0.001801 0.593 b1276 acnA -10.22 0.037037 184 -- 198 44 -- 55 aconitate hydratase 1; aconitase A  
10 0.001925 0.593 b2910 zapA -12.97 0.010115 44 -- 65 38 -- 56 FtsZ stabilizer  
11 0.002274 0.593 b1476 fdnI -10.73 0.029150 152 -- 175 44 -- 69 formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible  
12 0.002398 0.593 b1114 mfd -13.52 0.007793 210 -- 241 45 -- 73 transcription-repair coupling factor  
13 0.003065 0.593 b4529 ydbJ -10.82 0.027981 161 -- 194 44 -- 78 DUF333 family putative lipoprotein  
14 0.003078 0.593 b0886 cydC -10.90 0.026971 183 -- 199 39 -- 56 glutathione/cysteine ABC transporter export permease/ATPase  
15 0.003313 0.593 b3133 agaV -12.53 0.012445 185 -- 194 44 -- 53 N-acetylgalactosamine-specific enzyme IIB component of PTS  
16 0.003381 0.593 b0956 matP -12.11 0.015217 269 -- 280 42 -- 53 Ter macrodomain organizer matS-binding protein  
17 0.003407 0.593 b3607 cysE -9.56 0.050591 4 -- 44 27 -- 56 serine acetyltransferase  
18 0.003456 0.593 b0867 amiD -11.23 0.023022 276 -- 289 39 -- 52 1 6-anhydro-N-acetylmuramyl-L-alanine amidase Zn-dependent; OM lipoprotein  
19 0.003501 0.593 b2019 hisG -12.73 0.011332 183 -- 194 43 -- 54 ATP phosphoribosyltransferase  
20 0.00399 0.5992 b4175 hflC -10.54 0.031960 184 -- 196 43 -- 56 HflB protease modulator specific for phage lambda cII repressor  
21 0.004054 0.5992 b2076 mdtC -11.67 0.018717 158 -- 193 45 -- 78 multidrug efflux system subunit C  
22 0.004195 0.5992 b3715 yieH -7.44 0.134211 287 -- 299 41 -- 55 phosphoenolpyruvate and 6-phosphogluconate phosphatase  
23 0.004411 0.5992 b3390 aroK -10.22 0.037117 283 -- 298 39 -- 54 shikimate kinase I  
24 0.004602 0.5992 b0526 cysS -10.20 0.037463 234 -- 245 41 -- 52 cysteinyl-tRNA synthetase  
25 0.004737 0.5992 b1093 fabG -11.25 0.022809 188 -- 202 38 -- 52 3-oxoacyl-[acyl-carrier-protein] reductase  
26 0.004859 0.5992 b1753 ynjA -8.90 0.068656 186 -- 195 43 -- 52 carboxymuconolactone decarboxylase family protein  
27 0.005027 0.5992 b3745 viaA -10.46 0.033099 243 -- 253 42 -- 52 stimulator of RavA ATPase activity; von Willebrand factor domain protein  
28 0.005242 0.6024 b0785 moaE -11.01 0.025514 211 -- 232 52 -- 74 molybdopterin synthase large subunit  
29 0.005664 0.6127 b3831 udp -8.88 0.069383 184 -- 196 42 -- 54 uridine phosphorylase  
30 0.005789 0.6127 b2688 gshA -11.51 0.020183 254 -- 264 45 -- 55 glutamate-cysteine ligase  
31 0.005902 0.6127 b1951 rcsA -8.09 0.100100 163 -- 178 37 -- 51 transcriptional regulator of colanic acid capsular biosynthesis  
32 0.006131 0.6129 b2585 pssA -9.74 0.046374 32 -- 41 45 -- 54 phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase  
33 0.006504 0.6129 b1937 fliE -6.45 0.207626 119 -- 135 24 -- 40 flagellar basal-body component  
34 0.007003 0.6129 b4199 yjfY -12.43 0.013073 184 -- 195 46 -- 57 YhcN family protein periplasmic  
35 0.00713 0.6129 b2025 hisF -8.66 0.076851 182 -- 193 46 -- 57 imidazole glycerol phosphate synthase catalytic subunit with HisH  
36 0.007218 0.6129 b3938 metJ -9.22 0.059290 181 -- 189 45 -- 53 transcriptional repressor S-adenosylmethionine-binding  
37 0.007616 0.6129 b4141 yjeH -11.12 0.024259 30 -- 40 44 -- 54 putative transporter  
38 0.007716 0.6129 b0480 ushA -6.97 0.165152 186 -- 197 45 -- 55 bifunctional UDP-sugar hydrolase/5'-nucleotidase  
39 0.007917 0.6129 b3657 yicJ -11.19 0.023423 220 -- 230 47 -- 57 putative transporter  
40 0.007925 0.6129 b1109 ndh -7.04 0.160101 187 -- 195 46 -- 54 respiratory NADH dehydrogenase 2/cupric reductase  
41 0.008018 0.6129 b1740 nadE -11.27 0.022577 258 -- 272 38 -- 52 NAD synthetase NH3/glutamine-dependent  
42 0.008125 0.6129 b2431 yfeX -9.88 0.043594 266 -- 278 44 -- 56 porphyrinogen oxidase cytoplasmic  
43 0.008509 0.6129 b4322 uxuA -11.91 0.016653 184 -- 195 44 -- 55 mannonate hydrolase  
44 0.008636 0.6129 b3317 rplB -9.78 0.045660 184 -- 194 43 -- 55 50S ribosomal subunit protein L2  
45 0.009176 0.6129 b3389 aroB -8.88 0.069424 203 -- 218 37 -- 52 3-dehydroquinate synthase  
46 0.009202 0.6129 b0183 rnhB -8.44 0.085048 25 -- 32 48 -- 55 ribonuclease HII degrades RNA of DNA-RNA hybrids  
47 0.009275 0.6129 b3412 bioH -9.55 0.050822 229 -- 245 38 -- 55 pimeloyl-ACP methyl ester carboxylesterase  
48 0.00943 0.6129 b3033 yqiB -8.72 0.074798 113 -- 121 44 -- 52 DUF1249 protein YqiB  
49 0.009604 0.6129 b1175 minD -8.49 0.083180 191 -- 199 40 -- 48 inhibitor of FtsZ ring polymerization; chromosome-membrane tethering protein; membrane ATPase of the MinCDEE system  
50 0.009706 0.6129 b0109 nadC -3.48 0.624399 8 -- 15 22 -- 29 quinolinate phosphoribosyltransferase  
51 0.009714 0.6129 b1736 chbA -9.09 0.063099 186 -- 194 44 -- 52 N N'-diacetylchitobiose-specific enzyme IIA component of PTS  
52 0.01005 0.6177 b3985 rplJ -10.76 0.028819 17 -- 26 48 -- 57 50S ribosomal subunit protein L10  
53 0.01077 0.6177 b3429 glgA -6.74 0.182373 105 -- 111 44 -- 50 glycogen synthase  
54 0.01118 0.6177 b0127 yadG -7.27 0.144346 282 -- 299 40 -- 55 putative ABC transporter ATPase  
55 0.01149 0.6177 b3287 def -9.61 0.049470 133 -- 146 41 -- 54 peptide deformylase  
56 0.01199 0.6177 b0836 bssR -10.68 0.029916 18 -- 32 42 -- 55 repressor of biofilm formation by indole transport regulation  
57 0.01201 0.6177 b2959 yggL -9.33 0.056423 82 -- 92 47 -- 57 DUF469 family protein  
58 0.01235 0.6177 b3903 rhaA -9.27 0.057813 267 -- 276 46 -- 55 L-rhamnose isomerase  
59 0.01284 0.6177 b3453 ugpB -7.80 0.113752 247 -- 260 43 -- 56 sn-glycerol-3-phosphate ABC transporter periplasmic binding protein  
60 0.01286 0.6177 b4113 basR -8.68 0.076010 6 -- 31 48 -- 75 response regulator in two-component regulatory system with BasS  
61 0.01292 0.6177 b4154 frdA -9.46 0.053105 187 -- 202 38 -- 54 anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit  
62 0.01306 0.6177 b4034 malE -9.62 0.049140 112 -- 120 45 -- 53 maltose transporter subunit  
63 0.01324 0.6177 b3140 agaD -9.33 0.056359 182 -- 192 45 -- 55 N-acetylgalactosamine-specific enzyme IID component of PTS  
64 0.01382 0.6177 b3250 mreC -10.24 0.036759 206 -- 229 53 -- 75 cell wall structural complex MreBCD transmembrane component MreC  
65 0.01408 0.6177 b3176 glmM -9.74 0.046438 133 -- 141 48 -- 56 phosphoglucosamine mutase  
66 0.01414 0.6177 b0440 hupB -10.30 0.035643 184 -- 193 44 -- 53 HU DNA-binding transcriptional regulator beta subunit  
67 0.01414 0.6177 b0474 adk -7.17 0.151538 186 -- 198 39 -- 51 adenylate kinase  
68 0.01422 0.6177 b3826 yigL -7.04 0.159921 44 -- 50 49 -- 55 pyridoxal phosphate phosphatase  
69 0.01434 0.6177 b0551 quuD -6.03 0.248082 117 -- 124 48 -- 55 DLP12 prophage; putative antitermination protein  
70 0.01448 0.6177 b4012 yjaB -8.12 0.098308 234 -- 242 44 -- 52 GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein  
71 0.01472 0.6177 b0846 rcdA -10.28 0.035999 187 -- 195 44 -- 52 transcriptional regulator of csgD and ybiJI; autoregulator  
72 0.015 0.6177 b2513 yfgM -10.40 0.034106 179 -- 190 45 -- 55 ancillary SecYEG translocon subunit; putative anti-RcsB factor  
73 0.01516 0.6177 b0619 citA -15.44 0.003129 164 -- 175 46 -- 57 sensory histidine kinase in two-component regulatory system with CitB  
74 0.01569 0.6177 b3012 dkgA -8.72 0.074604 189 -- 197 44 -- 52 2 5-diketo-D-gluconate reductase A  
75 0.01577 0.6177 b1345 intR -9.71 0.047033 139 -- 151 42 -- 53 Rac prophage; integrase  
76 0.01599 0.6177 b1849 purT -9.18 0.060248 187 -- 212 25 -- 50 phosphoribosylglycinamide formyltransferase 2  
77 0.01626 0.6177 b1414 ydcF -7.59 0.125301 189 -- 198 44 -- 53 DUF218 superfamily protein SAM-binding  
78 0.01669 0.6177 b2764 cysJ -9.29 0.057302 85 -- 99 53 -- 70 sulfite reductase alpha subunit flavoprotein  
79 0.01695 0.6177 b0435 bolA -9.02 0.064980 184 -- 202 38 -- 55 stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC  
80 0.01709 0.6177 b2498 upp -4.70 0.418803 173 -- 195 44 -- 70 uracil phosphoribosyltransferase  
81 0.01751 0.6177 b2741 rpoS -9.52 0.051528 88 -- 101 44 -- 56 RNA polymerase sigma S (sigma 38) factor  
82 0.01753 0.6177 b2204 napH -9.88 0.043521 152 -- 162 42 -- 52 ferredoxin-type protein  
83 0.0176 0.6177 b2457 eutM -9.48 0.052376 185 -- 194 44 -- 53 ethanolamine utilization protein putative carboxysome structural protein  
84 0.01785 0.6177 b4318 fimF -9.06 0.063721 96 -- 107 44 -- 55 minor component of type 1 fimbriae b1504 b0943
85 0.01786 0.6177 b1427 rimL -14.01 0.006161 123 -- 133 46 -- 56 ribosomal-protein-L7/L12-serine acetyltransferase  
86 0.01794 0.6177 b3260 dusB -7.53 0.128932 119 -- 138 38 -- 55 tRNA-dihydrouridine synthase B  
87 0.01794 0.6177 b3499 rlmJ -10.99 0.025859 12 -- 21 46 -- 55 23S rRNA m(6)A2030 methyltransferase SAM-dependent  
88 0.01799 0.6177 b0415 ribE -8.66 0.076826 57 -- 64 47 -- 54 riboflavin synthase beta chain  
89 0.01853 0.6177 b1448 mnaT -8.57 0.080000 123 -- 134 43 -- 54 methionine N-acyltransferase; L-amino acid N-acyltransferase  
90 0.01863 0.6177 b0659 ybeY -9.29 0.057244 42 -- 51 47 -- 56 ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor  
91 0.01869 0.6177 b3432 glgB -9.43 0.053684 93 -- 103 45 -- 56 1 4-alpha-glucan branching enzyme  
92 0.01873 0.6177 b2297 pta -7.94 0.106741 187 -- 219 22 -- 52 phosphate acetyltransferase  
93 0.01877 0.6177 b3492 yhiN -6.30 0.220558 150 -- 160 43 -- 53 putative oxidoreductase  
94 0.01884 0.6177 b2048 cpsG -10.80 0.028164 47 -- 56 45 -- 54 phosphomannomutase  
95 0.01894 0.6177 b0407 yajC -8.94 0.067585 73 -- 105 45 -- 79 SecYEG protein translocase auxillary subunit  
96 0.01897 0.6177 b2422 cysA -7.76 0.115977 190 -- 202 38 -- 50 sulfate/thiosulfate transporter subunit  
97 0.01904 0.6177 b3102 yqjG -9.04 0.064335 159 -- 168 44 -- 53 putative S-transferase  
98 0.0193 0.6177 b2705 srlD -10.75 0.028892 101 -- 114 40 -- 53 sorbitol-6-phosphate dehydrogenase  
99 0.01953 0.6177 b2473 ypfH -12.09 0.015349 8 -- 40 44 -- 76 palmitoyl-CoA esterase activity uncertain physiological substrate  
100 0.01963 0.6177 b4001 yjaH -9.93 0.042585 215 -- 230 39 -- 53 DUF1481 family putative lipoprotein  
101 0.01972 0.6177 b3636 rpmG -7.41 0.136064 187 -- 193 44 -- 50 50S ribosomal subunit protein L33  
102 0.02032 0.6177 b1267 yciO -10.56 0.031637 188 -- 197 44 -- 53 putative RNA binding protein  
103 0.02062 0.6177 b1332 ynaJ -7.81 0.113347 36 -- 54 40 -- 55 DUF2534 family putative inner membrane protein  
104 0.02144 0.6177 b2718 hycH -8.07 0.100760 181 -- 190 46 -- 55 hydrogenase 3 maturation protein  
105 0.0216 0.6177 b2962 yggX -9.20 0.059738 186 -- 194 45 -- 53 oxidative damage protective factor for iron-sulfur proteins  
106 0.02162 0.6177 b1831 proQ -7.28 0.143813 159 -- 202 38 -- 75 RNA chaperone putative ProP translation regulator  
107 0.02168 0.6177 b1738 chbB -9.32 0.056668 26 -- 34 47 -- 55 N N'-diacetylchitobiose-specific enzyme IIB component of PTS  
108 0.0217 0.6177 b0243 proA -8.76 0.073409 183 -- 193 47 -- 57 gamma-glutamylphosphate reductase  
109 0.02227 0.6177 b4040 ubiA -8.97 0.066674 182 -- 194 44 -- 55 p-hydroxybenzoate octaprenyltransferase  
110 0.02234 0.6177 b0141 yadN -8.72 0.074917 179 -- 189 37 -- 47 putative fimbrial-like adhesin protein  
111 0.02245 0.6177 b3413 gntX -10.38 0.034336 253 -- 267 41 -- 55 DNA catabolic protein  
112 0.02248 0.6177 b2796 sdaC -8.62 0.078257 115 -- 131 34 -- 50 putative serine transporter  
113 0.02257 0.6177 b0915 lpxK -7.55 0.127690 105 -- 116 46 -- 56 lipid A 4'kinase  
114 0.02277 0.6177 b4077 gltP -4.92 0.386213 48 -- 56 47 -- 55 glutamate/aspartate:proton symporter  
115 0.02287 0.6177 b3621 waaC -10.02 0.040839 179 -- 191 44 -- 55 ADP-heptose:LPS heptosyl transferase I  
116 0.02318 0.6177 b1726 yniB -7.96 0.105879 188 -- 195 47 -- 54 putative inner membrane protein  
117 0.02321 0.6177 b1712 ihfA -8.91 0.068436 115 -- 126 45 -- 56 integration host factor (IHF) DNA-binding protein alpha subunit  
118 0.0238 0.6177 b3321 rpsJ -9.75 0.046314 151 -- 177 30 -- 55 30S ribosomal subunit protein S10  
119 0.02381 0.6177 b1434 ydcN -8.41 0.086264 87 -- 94 43 -- 50 putative DNA-binding transcriptional regulator  
120 0.02398 0.6177 b0283 paoD -10.02 0.040757 188 -- 198 44 -- 54 moco insertion factor for PaoABC aldehyde oxidoreductase  
121 0.02422 0.6177 b0754 aroG -7.67 0.121074 238 -- 245 47 -- 54 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase phenylalanine repressible  
122 0.02427 0.6177 b1116 lolC -7.56 0.127136 206 -- 233 55 -- 74 lipoprotein-releasing system transmembrane protein  
123 0.02427 0.6177 b4485 ytfR -5.89 0.261942 32 -- 42 44 -- 54 putative sugar ABC transporter ATPase  
124 0.02431 0.6177 b2044 wcaL -7.42 0.135034 145 -- 156 45 -- 56 putative glycosyl transferase  
125 0.02442 0.6177 b3181 greA -6.11 0.239901 243 -- 260 40 -- 56 transcript cleavage factor  
126 0.02445 0.6177 b4364 yjjP -5.95 0.256190 188 -- 200 42 -- 53 DUF1212 family inner membrane protein  
127 0.0247 0.6177 b3306 rpsH -8.61 0.078593 53 -- 64 46 -- 57 30S ribosomal subunit protein S8  
128 0.02532 0.6177 b3642 pyrE -8.06 0.101423 72 -- 92 43 -- 68 orotate phosphoribosyltransferase  
129 0.02539 0.6177 b0129 yadI -10.21 0.037333 124 -- 136 40 -- 52 putative PTS Enzyme IIA  
130 0.02541 0.6177 b4365 yjjQ -8.08 0.100207 263 -- 277 38 -- 55 putative transcriptional regulator  
131 0.02569 0.6177 b0848 ybjM -8.44 0.085177 187 -- 197 44 -- 55 inner membrane protein  
132 0.02588 0.6177 b3180 yhbY -5.98 0.252347 290 -- 297 46 -- 53 RNA binding protein associated with pre-50S ribosomal subunits  
133 0.02604 0.6177 b0876 ybjD -5.23 0.342712 179 -- 199 45 -- 55 putative OLD family ATP-dependent endonuclease; DUF2813 family protein  
134 0.02619 0.6177 b1126 potA -9.47 0.052791 285 -- 299 37 -- 55 spermidine/putrescine ABC transporter ATPase  
135 0.02628 0.6177 b3547 yhjX -9.70 0.047334 158 -- 184 28 -- 55 pyruvate-inducible inner membrane protein putative transporter  
136 0.02642 0.6177 b4036 lamB -8.19 0.095416 26 -- 54 55 -- 84 maltose outer membrane porin (maltoporin)  
137 0.02646 0.6177 b3807 cyaY -4.99 0.375460 213 -- 221 38 -- 46 iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein  
138 0.02658 0.6177 b2331 smrB -9.17 0.060779 224 -- 232 45 -- 53 putative DNA endonuclease  
139 0.02683 0.6177 b1474 fdnG -8.74 0.074199 188 -- 196 44 -- 52 formate dehydrogenase-N alpha subunit nitrate-inducible b3894
140 0.02703 0.6177 b3447 ggt -5.41 0.319095 66 -- 81 38 -- 54 gamma-glutamyltranspeptidase  
141 0.02753 0.6177 b3215 yhcA -6.30 0.221284 185 -- 194 39 -- 48 putative periplasmic chaperone protein  
142 0.02758 0.6177 b3186 rplU -10.01 0.040887 186 -- 200 38 -- 52 50S ribosomal subunit protein L21  
143 0.02773 0.6177 b0409 secF -7.84 0.111773 181 -- 195 43 -- 55 SecYEG protein translocase auxillary subunit  
144 0.02798 0.6177 b0682 chiQ -9.70 0.047426 184 -- 197 41 -- 56 chitosugar-induced verified lipoprotein  
145 0.02855 0.6177 b2252 ais -5.71 0.282709 182 -- 202 38 -- 55 putative LPS core heptose(II)-phosphate phosphatase  
146 0.02871 0.6177 b1120 cobB -8.56 0.080407 32 -- 40 43 -- 51 deacetylase of acs and cheY chemotaxis regulator  
147 0.02922 0.6177 b3836 tatA -6.91 0.169904 186 -- 195 44 -- 53 TatABCE protein translocation system subunit  
148 0.02945 0.6177 b0692 potE -8.42 0.085901 187 -- 195 44 -- 52 putrescine/proton symporter: putrescine/ornithine antiporter  
149 0.03014 0.6177 b4470 yhaM -8.71 0.074988 251 -- 260 44 -- 54 putative L-serine dehydratase alpha chain  
150 0.03022 0.6177 b1285 gmr -9.04 0.064446 208 -- 218 47 -- 57 cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability  
151 0.03043 0.6177 b3081 fadH -8.56 0.080347 290 -- 297 43 -- 50 2 4-dienoyl-CoA reductase NADH and FMN-linked  
152 0.03059 0.6177 b2609 rpsP -6.70 0.186060 187 -- 203 23 -- 53 30S ribosomal subunit protein S16  
153 0.03061 0.6177 b4060 yjcB -6.94 0.167417 88 -- 108 29 -- 50 putative inner membrane protein  
154 0.03071 0.6177 b0368 tauD -7.18 0.150437 69 -- 85 40 -- 55 taurine dioxygenase 2-oxoglutarate-dependent  
155 0.03087 0.6177 b1003 yccJ -9.03 0.064630 130 -- 145 43 -- 56 uncharacterized protein  
156 0.03128 0.6177 b4512 ybdD -7.87 0.110479 26 -- 38 43 -- 55 DUF466 family protein  
157 0.03134 0.6177 b4086 alsC -8.98 0.066369 183 -- 191 45 -- 53 D-allose ABC transporter permease  
158 0.03174 0.6177 b3185 rpmA -9.10 0.062717 186 -- 199 39 -- 52 50S ribosomal subunit protein L27  
159 0.0318 0.6177 b2532 trmJ -7.64 0.122614 101 -- 114 44 -- 55 tRNA mC32 mU32 2'-O-methyltransferase SAM-dependent  
160 0.0322 0.6177 b1550 gnsB -8.75 0.073686 189 -- 197 44 -- 52 Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) b4517
161 0.03295 0.6177 b1630 rsxD -5.86 0.265655 34 -- 42 49 -- 57 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex  
162 0.03332 0.6177 b3304 rplR -8.58 0.079933 170 -- 177 46 -- 53 50S ribosomal subunit protein L18  
163 0.03345 0.6177 b1235 rssB -5.20 0.346272 186 -- 195 44 -- 55 PcnB-degradosome interaction factor; response regulator  
164 0.03346 0.6177 b1449 curA -5.87 0.264423 114 -- 122 45 -- 53 curcumin/dihydrocurcumin reductase NADPH-dependent  
165 0.0337 0.6177 b3983 rplK -8.80 0.071896 189 -- 197 41 -- 49 50S ribosomal subunit protein L11  
166 0.03384 0.6177 b4035 malK -4.35 0.473183 186 -- 196 44 -- 53 maltose ABC transportor ATPase  
167 0.03387 0.6177 b3980 tufB -7.70 0.119070 183 -- 194 44 -- 55 translation elongation factor EF-Tu 2 b3339
168 0.03398 0.6177 b0321 yahG -8.56 0.080369 183 -- 192 44 -- 53 DUF1116 family protein b4572
169 0.03425 0.6177 b0336 codB -12.15 0.014930 188 -- 202 38 -- 52 cytosine transporter  
170 0.03452 0.6177 b0792 ybhR -7.08 0.157577 208 -- 236 47 -- 69 putative ABC transporter permease  
171 0.0346 0.6177 b1865 nudB -7.50 0.130652 189 -- 196 46 -- 53 dihydroneopterin triphosphate pyrophosphatase  
172 0.03476 0.6177 b3441 yhhY -9.34 0.055938 185 -- 193 45 -- 53 aminoacyl nucleotide detoxifying acetyltransferase  
173 0.03478 0.6177 b1234 rssA -4.70 0.418234 181 -- 188 43 -- 50 putative patatin-like family phospholipase  
174 0.03548 0.6177 b2437 eutR -7.66 0.121193 279 -- 299 38 -- 55 eut operon transcriptional activator AraC family  
175 0.03585 0.6177 b2028 ugd -9.30 0.056993 217 -- 248 46 -- 74 UDP-glucose 6-dehydrogenase  
176 0.03596 0.6177 b1747 astA -4.82 0.399998 129 -- 139 46 -- 56 arginine succinyltransferase  
177 0.03616 0.6177 b1474 fdnG -8.74 0.074199 188 -- 196 44 -- 52 formate dehydrogenase-N alpha subunit nitrate-inducible b3894
178 0.03627 0.6177 b0924 mukB -9.59 0.049840 186 -- 195 44 -- 53 chromosome condensin MukBEF ATPase and DNA-binding subunit  
179 0.03684 0.6177 b0335 prpE -7.81 0.113441 203 -- 221 38 -- 55 propionate--CoA ligase  
180 0.03697 0.6177 b1325 ycjG -6.24 0.226397 189 -- 195 47 -- 53 L-Ala-D/L-Glu epimerase  
181 0.03769 0.6177 b0912 ihfB -7.34 0.140491 192 -- 199 43 -- 50 integration host factor (IHF) DNA-binding protein beta subunit  
182 0.03771 0.6177 b0397 sbcC -11.00 0.025718 84 -- 100 39 -- 56 exonuclease dsDNA ATP-dependent  
183 0.03803 0.6177 b3616 tdh -7.63 0.122830 33 -- 50 37 -- 52 L-threonine 3-dehydrogenase NAD(P)-binding  
184 0.03803 0.6177 b3647 ligB -3.67 0.590336 72 -- 111 39 -- 67 DNA ligase NAD(+)-dependent  
185 0.03847 0.6177 b0621 dcuC -6.69 0.186516 155 -- 171 26 -- 48 anaerobic C4-dicarboxylate transport  
186 0.03879 0.6177 b2898 ygfZ -4.98 0.377094 224 -- 230 51 -- 57 iron-sulfur cluster repair protein plumbagin resistance  
187 0.03882 0.6177 b0403 malZ -7.79 0.114240 189 -- 197 42 -- 50 maltodextrin glucosidase  
188 0.03926 0.6177 b4547 ypfN -8.44 0.084930 187 -- 194 44 -- 51 putative membrane protein UPF0370 family  
189 0.03933 0.6177 b2461 eutP -9.78 0.045635 227 -- 240 44 -- 56 putative P-loop NTPase ethanolamine utilization protein  
190 0.03948 0.6177 b2914 rpiA -5.25 0.339968 76 -- 83 45 -- 52 ribose 5-phosphate isomerase constitutive  
191 0.0398 0.6177 b4335 yjiM -5.72 0.281824 283 -- 290 47 -- 54 putative 2-hydroxyglutaryl-CoA dehydratase  
192 0.04008 0.6177 b2822 recC -5.02 0.370915 179 -- 195 44 -- 57 exonuclease V (RecBCD complex) gamma chain  
193 0.04043 0.6177 b1180 ycgM -6.42 0.210248 289 -- 296 47 -- 54 putative isomerase/hydrolase  
194 0.04051 0.6177 b0814 ompX -6.96 0.165642 107 -- 118 50 -- 61 outer membrane protein X  
195 0.04073 0.6177 b3166 truB -9.24 0.058593 189 -- 197 45 -- 53 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase  
196 0.04084 0.6177 b3137 kbaY -7.51 0.129887 187 -- 200 37 -- 51 tagatose 6-phosphate aldolase 1 kbaY subunit b2096
197 0.04129 0.6177 b1205 ychH -8.72 0.074776 153 -- 162 43 -- 52 DUF2583 family putative inner membrane protein  
198 0.04148 0.6177 b1067 yceH -6.24 0.226874 185 -- 202 38 -- 56 UPF0502 family protein  
199 0.0417 0.6177 b4070 nrfA -7.95 0.106497 2 -- 16 44 -- 55 nitrite reductase formate-dependent cytochrome  
200 0.04173 0.6177 b3155 yhbQ -7.74 0.117248 9 -- 16 50 -- 57 GIY-YIG nuclease superfamily protein  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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