8 |
0.001816 |
0.4469 |
lmo1666 |
N/A |
-21.94 |
0.003684 |
151 -- 207 |
157 -- 207 |
peptidoglycan-linked protein |
lmo0333 |
_____________150____________208\n_____________|______________|\n5'-GUG...AGAUG______________GUAAA...CUC-3'\n______________GGGAUGAAUGAAAA\n______________|:||||||||||||\n______________CUCUACUUACUUUU\n3'-GUU...GGUUA______________GUUUA...GGA-5'\n_____________|______________|\n_____________208____________156\n |
201 -- 207 |
157 -- 163 |
-18.267 kcal/mol |
1.529 kcal/mol |
0.904482 kcal/mol |
150 208@LB@ | |@LB@5'-GUG...AGAUG GUAAA...CUC-3'@LB@ GGGAUGAAUGAAAA@LB@ |:||||||||||||@LB@ CUCUACUUACUUUU@LB@3'-GUU...GGUUA GUUUA...GGA-5'@LB@ | |@LB@ 208 156@LB@@LB@@LB@Energy -21.94 kcal/mol@LB@Hybridization Energy -18.267 kcal/mol@LB@Unfolding Energy - mRNA 1.529 kcal/mol@LB@Unfolding Energy - sRNA 0.904482 kcal/mol@LB@@LB@Position - mRNA 151 -- 207@LB@Position - sRNA 157 -- 207@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 157 -- 163@LB@ |
20 |
0.003655 |
0.4469 |
lmo1591 |
argC |
-21.66 |
0.004270 |
183 -- 240 |
156 -- 208 |
N-acetyl-gamma-glutamyl-phosphate reductase |
|
_____________182___________________________________________________________241\n_____________|_____________________________________________________________|\n5'-AAA...AUAAU________A________________AGUUUCAAU__U____G___C_______UG______UUGAG...GUU-3'\n______________UAACGGGG_GGGGU_UAGG_AUGAA_________CA_UGGC_CGA_GGGGU_A__GAGGAC\n______________|||||||:_|:||:_|||:_|||||_________||_:|||_|:|_|:|:|_|__||::||\n______________AUUGCCCU_CUCCG_AUCU_UACUU_________GU_GCCG_GUU_CUCUA_U__CUUUUG\n3'-GUU...UACGU________A_____U____G_____GAU_________________A_____C_UA______UUUAU...GGA-5'\n_____________|_____________________________________________________________|\n_____________209___________________________________________________________155\n |
184 -- 190 |
201 -- 207 |
-40.8209 kcal/mol |
11.7 kcal/mol |
18.6528 kcal/mol |
182 241@LB@ | |@LB@5'-AAA...AUAAU A AGUUUCAAU U G C UG UUGAG...GUU-3'@LB@ UAACGGGG GGGGU UAGG AUGAA CA UGGC CGA GGGGU A GAGGAC@LB@ |||||||: |:||: |||: ||||| || :||| |:| |:|:| | ||::||@LB@ AUUGCCCU CUCCG AUCU UACUU GU GCCG GUU CUCUA U CUUUUG@LB@3'-GUU...UACGU A U G GAU A C UA UUUAU...GGA-5'@LB@ | |@LB@ 209 155@LB@@LB@@LB@Energy -21.66 kcal/mol@LB@Hybridization Energy -40.8209 kcal/mol@LB@Unfolding Energy - mRNA 11.7 kcal/mol@LB@Unfolding Energy - sRNA 18.6528 kcal/mol@LB@@LB@Position - mRNA 183 -- 240@LB@Position - sRNA 156 -- 208@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 201 -- 207@LB@ |
40 |
0.00848 |
0.5705 |
lmo2399 |
N/A |
-21.52 |
0.004592 |
127 -- 195 |
156 -- 207 |
|
|
_____________126_________________________________________________________________196\n_____________|___________________________________________________________________|\n5'-AUU...UCGAC_________GU_______CUUGUGGUUUAAAC____AGA____G__UAGA______A___G______GCUAA...CUG-3'\n______________GGUGAGGCA__GGCG_GA______________GCUA___ACGG_UA____AUGGGG_GAA_GAGGAU\n______________|:|||||||__|:|:_||______________:|||___||||_:|____|||:|:_|||_||::|:\n______________CUACUCCGU__CUGU_CU______________UGAU___UGCC_GU____UACUCU_CUU_CUUUUG\n3'-GUU...UUGCC_________AU____A____________________G______G____________A___A______UUUAU...GGA-5'\n_____________|___________________________________________________________________|\n_____________208_________________________________________________________________155\n |
132 -- 138 |
194 -- 200 |
-37.8581 kcal/mol |
11.6457 kcal/mol |
14.014 kcal/mol |
126 196@LB@ | |@LB@5'-AUU...UCGAC GU CUUGUGGUUUAAAC AGA G UAGA A G GCUAA...CUG-3'@LB@ GGUGAGGCA GGCG GA GCUA ACGG UA AUGGGG GAA GAGGAU@LB@ |:||||||| |:|: || :||| |||| :| |||:|: ||| ||::|:@LB@ CUACUCCGU CUGU CU UGAU UGCC GU UACUCU CUU CUUUUG@LB@3'-GUU...UUGCC AU A G G A A UUUAU...GGA-5'@LB@ | |@LB@ 208 155@LB@@LB@@LB@Energy -21.52 kcal/mol@LB@Hybridization Energy -37.8581 kcal/mol@LB@Unfolding Energy - mRNA 11.6457 kcal/mol@LB@Unfolding Energy - sRNA 14.014 kcal/mol@LB@@LB@Position - mRNA 127 -- 195@LB@Position - sRNA 156 -- 207@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 194 -- 200@LB@ |
33 |
0.006763 |
0.5515 |
lmo1941 |
N/A |
-21.42 |
0.004845 |
223 -- 286 |
154 -- 207 |
|
|
_____________222___________________________________________________________________287\n_____________|_____________________________________________________________________|\n5'-UAG...AGAAA_______AUACGAAGAACC___UGAUUAU________UU___AA_________________UC______UGAAC...UGU-3'\n______________AACGGGA____________GGC_______GACAUGAG__CUG___GGCCA___AGAUGAAU___AACAA\n______________|||||||____________|||_______|||||||:__||:___|||||___||||||||___|||||\n______________UUGCCCU____________CCG_______CUGUACUU__GAU___CCGGU___UCUACUUA___UUGUU\n3'-GUU...ACGUA_______ACU____________UAU_________________GUG_____UAC________CUU_____UAUUA...GGA-5'\n_____________|_____________________________________________________________________|\n_____________208___________________________________________________________________153\n |
273 -- 279 |
162 -- 168 |
-39.5283 kcal/mol |
10.6608 kcal/mol |
18.6655 kcal/mol |
222 287@LB@ | |@LB@5'-UAG...AGAAA AUACGAAGAACC UGAUUAU UU AA UC UGAAC...UGU-3'@LB@ AACGGGA GGC GACAUGAG CUG GGCCA AGAUGAAU AACAA@LB@ ||||||| ||| |||||||: ||: ||||| |||||||| |||||@LB@ UUGCCCU CCG CUGUACUU GAU CCGGU UCUACUUA UUGUU@LB@3'-GUU...ACGUA ACU UAU GUG UAC CUU UAUUA...GGA-5'@LB@ | |@LB@ 208 153@LB@@LB@@LB@Energy -21.42 kcal/mol@LB@Hybridization Energy -39.5283 kcal/mol@LB@Unfolding Energy - mRNA 10.6608 kcal/mol@LB@Unfolding Energy - sRNA 18.6655 kcal/mol@LB@@LB@Position - mRNA 223 -- 286@LB@Position - sRNA 154 -- 207@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 162 -- 168@LB@ |
15 |
0.003165 |
0.4469 |
lmo0292 |
N/A |
-21.41 |
0.004857 |
182 -- 249 |
155 -- 212 |
heat-shock protein htrA serine protease |
|
_____________181_____________________________________________________________250\n_____________|_______________________________________________________________|\n5'-GAG...GCAGA____AAGGA__________G_G_AAGAAAAGAAUUUA_____AAACAGC______________CGCCG...AAC-3'\n______________GAGG_____AGACAUGGAC_A_A______________AAUGA_______GA_GAAUGAAAGCA\n______________||||_____|||||||:||_|_|______________|||||_______||_||||||||:||\n______________CUCC_____UCUGUACUUG_U_U______________UUACU_______CU_CUUACUUUUGU\n3'-GUU...CCCUA____GUA____________A_G_GCCGG_______________________A___________UUAUU...GGA-5'\n_____________|_______________________________________________________________|\n_____________213_____________________________________________________________154\n |
243 -- 249 |
155 -- 161 |
-30.3296 kcal/mol |
4.19045 kcal/mol |
13.9822 kcal/mol |
181 250@LB@ | |@LB@5'-GAG...GCAGA AAGGA G G AAGAAAAGAAUUUA AAACAGC CGCCG...AAC-3'@LB@ GAGG AGACAUGGAC A A AAUGA GA GAAUGAAAGCA@LB@ |||| |||||||:|| | | ||||| || ||||||||:||@LB@ CUCC UCUGUACUUG U U UUACU CU CUUACUUUUGU@LB@3'-GUU...CCCUA GUA A G GCCGG A UUAUU...GGA-5'@LB@ | |@LB@ 213 154@LB@@LB@@LB@Energy -21.41 kcal/mol@LB@Hybridization Energy -30.3296 kcal/mol@LB@Unfolding Energy - mRNA 4.19045 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 182 -- 249@LB@Position - sRNA 155 -- 212@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 155 -- 161@LB@ |
27 |
0.005046 |
0.5029 |
lmo2370 |
N/A |
-21.11 |
0.005698 |
252 -- 287 |
166 -- 205 |
aminotransferase |
|
_____________251_____________288\n_____________|_______________|\n5'-CCU...AUAAU_____C_________AGAAG...UGU-3'\n______________UGAGG_GAAUGAAAG\n______________||||:_||||||||:\n______________ACUCU_CUUACUUUU\n3'-GUU...CGGUU_____A_________GUUUA...GGA-5'\n_____________|_______________|\n_____________206_____________165\n |
176 -- 182 |
157 -- 163 |
-15.2487 kcal/mol |
2.36926 kcal/mol |
0.905109 kcal/mol |
251 288@LB@ | |@LB@5'-CCU...AUAAU C AGAAG...UGU-3'@LB@ UGAGG GAAUGAAAG@LB@ ||||: ||||||||:@LB@ ACUCU CUUACUUUU@LB@3'-GUU...CGGUU A GUUUA...GGA-5'@LB@ | |@LB@ 206 165@LB@@LB@@LB@Energy -21.11 kcal/mol@LB@Hybridization Energy -15.2487 kcal/mol@LB@Unfolding Energy - mRNA 2.36926 kcal/mol@LB@Unfolding Energy - sRNA 0.905109 kcal/mol@LB@@LB@Position - mRNA 252 -- 287@LB@Position - sRNA 166 -- 205@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 157 -- 163@LB@ |
11 |
0.002745 |
0.4469 |
lmo0197 |
N/A |
-21.05 |
0.005861 |
175 -- 258 |
154 -- 211 |
regulatory protein SpoVG |
|
_____________174__________________259\n_____________|____________________|\n5'-UUA...AAACU_______A____________UUGCU...AUA-3'\n______________GAUG_GA_GAAUGAGAGCGA\n______________:|||_||_||||||:|:|:|\n______________UUAC_CU_CUUACUUUUGUU\n3'-GUU...GCCGG____U__A____________UAUUA...GGA-5'\n_____________|____________________|\n_____________212__________________153\n |
252 -- 258 |
154 -- 160 |
-17.4227 kcal/mol |
2.96559 kcal/mol |
0.959215 kcal/mol |
174 259@LB@ | |@LB@5'-UUA...AAACU A UUGCU...AUA-3'@LB@ GAUG GA GAAUGAGAGCGA@LB@ :||| || ||||||:|:|:|@LB@ UUAC CU CUUACUUUUGUU@LB@3'-GUU...GCCGG U A UAUUA...GGA-5'@LB@ | |@LB@ 212 153@LB@@LB@@LB@Energy -21.05 kcal/mol@LB@Hybridization Energy -17.4227 kcal/mol@LB@Unfolding Energy - mRNA 2.96559 kcal/mol@LB@Unfolding Energy - sRNA 0.959215 kcal/mol@LB@@LB@Position - mRNA 175 -- 258@LB@Position - sRNA 154 -- 211@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 154 -- 160@LB@ |
22 |
0.003708 |
0.4469 |
lmo1689 |
N/A |
-20.94 |
0.006216 |
185 -- 218 |
155 -- 186 |
A/G-specific adenine glycosylase |
|
_____________184________________________________219\n_____________|__________________________________|\n5'-UGA...UAUUA________A__GGAA_______AA________G_CUAAC...CGU-3'\n______________GAAUUACG_GG____AAUGAGA__AAUGAAGA_A\n______________|||:|||:_||____|||||||__||||||:|_|\n______________CUUGAUGU_CC____UUACUCU__UUACUUUU_U\n3'-GUU...CUGUA________G__GG_________AC________G_UUAUU...GGA-5'\n_____________|__________________________________|\n_____________187________________________________154\n |
210 -- 216 |
157 -- 163 |
-27.9128 kcal/mol |
3.65812 kcal/mol |
9.66922 kcal/mol |
184 219@LB@ | |@LB@5'-UGA...UAUUA A GGAA AA G CUAAC...CGU-3'@LB@ GAAUUACG GG AAUGAGA AAUGAAGA A@LB@ |||:|||: || ||||||| ||||||:| |@LB@ CUUGAUGU CC UUACUCU UUACUUUU U@LB@3'-GUU...CUGUA G GG AC G UUAUU...GGA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -20.94 kcal/mol@LB@Hybridization Energy -27.9128 kcal/mol@LB@Unfolding Energy - mRNA 3.65812 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 185 -- 218@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 157 -- 163@LB@ |
9 |
0.002066 |
0.4469 |
lmo0669 |
N/A |
-20.91 |
0.006284 |
33 -- 77 |
156 -- 211 |
oxidoreductase |
|
_____________32__________________78\n_____________|___________________|\n5'-AAU...UAAAG___________________GGGAA...UUC-3'\n______________UAAUGGGG_GGAUGAAAAU\n______________:||||:|:_|:|||||||:\n______________GUUACUCU_CUUACUUUUG\n3'-GUU...UGCCG________A__________UUUAU...GGA-5'\n_____________|___________________|\n_____________212_________________155\n |
71 -- 77 |
156 -- 162 |
-16.6504 kcal/mol |
2.4241 kcal/mol |
0.944687 kcal/mol |
32 78@LB@ | |@LB@5'-AAU...UAAAG GGGAA...UUC-3'@LB@ UAAUGGGG GGAUGAAAAU@LB@ :||||:|: |:|||||||:@LB@ GUUACUCU CUUACUUUUG@LB@3'-GUU...UGCCG A UUUAU...GGA-5'@LB@ | |@LB@ 212 155@LB@@LB@@LB@Energy -20.91 kcal/mol@LB@Hybridization Energy -16.6504 kcal/mol@LB@Unfolding Energy - mRNA 2.4241 kcal/mol@LB@Unfolding Energy - sRNA 0.944687 kcal/mol@LB@@LB@Position - mRNA 33 -- 77@LB@Position - sRNA 156 -- 211@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 156 -- 162@LB@ |
10 |
0.002311 |
0.4469 |
lmo2106 |
N/A |
-20.89 |
0.006356 |
172 -- 222 |
159 -- 207 |
|
|
_____________171__________________________________________________223\n_____________|____________________________________________________|\n5'-AGU...UAAUA_______AC__CAA______G_____AAA____U__UUAA_______G____UUAUA...AUG-3'\n______________AAUGGGA__AG___CAUAGA_GUGAA____AUG_CU____AGAUGAA_UGGA\n______________||:||||__||___||||||_:||||____|:|_|:____|||||||_||:|\n______________UUGCCCU__UC___GUAUCU_UACUU____UGC_GG____UCUACUU_ACUU\n3'-GUU...ACGUA_______AC__C________G_____GAUG___C__UUAC____________UUGUU...GGA-5'\n_____________|____________________________________________________|\n_____________208__________________________________________________158\n |
211 -- 217 |
163 -- 169 |
-34.9864 kcal/mol |
6.68059 kcal/mol |
18.5724 kcal/mol |
171 223@LB@ | |@LB@5'-AGU...UAAUA AC CAA G AAA U UUAA G UUAUA...AUG-3'@LB@ AAUGGGA AG CAUAGA GUGAA AUG CU AGAUGAA UGGA@LB@ ||:|||| || |||||| :|||| |:| |: ||||||| ||:|@LB@ UUGCCCU UC GUAUCU UACUU UGC GG UCUACUU ACUU@LB@3'-GUU...ACGUA AC C G GAUG C UUAC UUGUU...GGA-5'@LB@ | |@LB@ 208 158@LB@@LB@@LB@Energy -20.89 kcal/mol@LB@Hybridization Energy -34.9864 kcal/mol@LB@Unfolding Energy - mRNA 6.68059 kcal/mol@LB@Unfolding Energy - sRNA 18.5724 kcal/mol@LB@@LB@Position - mRNA 172 -- 222@LB@Position - sRNA 159 -- 207@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 163 -- 169@LB@ |