183 |
0.0534 |
0.7607 |
lmo2583 |
N/A |
-16.44 |
0.052604 |
178 -- 212 |
151 -- 181 |
DNA-binding response regulator |
|
_____________177___________________________213\n_____________|_____________________________|\n5'-UAA...AAAUA_G_____AA______C_____________AACAA...AUG-3'\n______________A_ACGGU__GGUGAG___GGUGAAAAUGA\n______________|_||||:__::||||___::||||||::|\n______________U_UGCCG__UUACUC___UUACUUUUGUU\n3'-GUU...CUUGA_G_____G_______UAC___________UAUUA...GGA-5'\n_____________|_____________________________|\n_____________182___________________________150\n |
197 -- 203 |
155 -- 161 |
-21.6156 kcal/mol |
3.93053 kcal/mol |
8.33518 kcal/mol |
177 213@LB@ | |@LB@5'-UAA...AAAUA G AA C AACAA...AUG-3'@LB@ A ACGGU GGUGAG GGUGAAAAUGA@LB@ | ||||: ::|||| ::||||||::|@LB@ U UGCCG UUACUC UUACUUUUGUU@LB@3'-GUU...CUUGA G G UAC UAUUA...GGA-5'@LB@ | |@LB@ 182 150@LB@@LB@@LB@Energy -16.44 kcal/mol@LB@Hybridization Energy -21.6156 kcal/mol@LB@Unfolding Energy - mRNA 3.93053 kcal/mol@LB@Unfolding Energy - sRNA 8.33518 kcal/mol@LB@@LB@Position - mRNA 178 -- 212@LB@Position - sRNA 151 -- 181@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 155 -- 161@LB@ |
177 |
0.05015 |
0.7607 |
lmo1905 |
cca |
-16.43 |
0.052746 |
154 -- 208 |
160 -- 211 |
tRNA CCA-pyrophosphorylase |
|
_____________153_______________209\n_____________|_________________|\n5'-UUA...AGGAG______CA_________CGUUU...UGC-3'\n______________CGAUGA__GAUGAAUGA\n______________|:||||__|||||||||\n______________GUUACU__CUACUUACU\n3'-GUU...UGCCG_________________UUUGU...GGA-5'\n_____________|_________________|\n_____________212_______________159\n |
202 -- 208 |
160 -- 166 |
-15.3935 kcal/mol |
2.32419 kcal/mol |
0.846187 kcal/mol |
153 209@LB@ | |@LB@5'-UUA...AGGAG CA CGUUU...UGC-3'@LB@ CGAUGA GAUGAAUGA@LB@ |:|||| |||||||||@LB@ GUUACU CUACUUACU@LB@3'-GUU...UGCCG UUUGU...GGA-5'@LB@ | |@LB@ 212 159@LB@@LB@@LB@Energy -16.43 kcal/mol@LB@Hybridization Energy -15.3935 kcal/mol@LB@Unfolding Energy - mRNA 2.32419 kcal/mol@LB@Unfolding Energy - sRNA 0.846187 kcal/mol@LB@@LB@Position - mRNA 154 -- 208@LB@Position - sRNA 160 -- 211@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 160 -- 166@LB@ |
105 |
0.02711 |
0.6733 |
lmo0347 |
N/A |
-16.41 |
0.053410 |
62 -- 87 |
160 -- 186 |
dihydroxyacetone kinase |
|
_____________61____________________________88\n_____________|_____________________________|\n5'-AUC...GUUGG__________ACU________________UUGGU...AUU-3'\n______________GAACUACGCG___UCGAUG_GAU__AUGA\n______________|||||||:||___:|:|||_|||__||||\n______________CUUGAUGUGC___GGUUAC_CUA__UACU\n3'-GUU...CUGUA__________C________U___CU____UUUGU...GGA-5'\n_____________|_____________________________|\n_____________187___________________________159\n |
65 -- 71 |
177 -- 183 |
-23.7931 kcal/mol |
4.23572 kcal/mol |
9.57505 kcal/mol |
61 88@LB@ | |@LB@5'-AUC...GUUGG ACU UUGGU...AUU-3'@LB@ GAACUACGCG UCGAUG GAU AUGA@LB@ |||||||:|| :|:||| ||| ||||@LB@ CUUGAUGUGC GGUUAC CUA UACU@LB@3'-GUU...CUGUA C U CU UUUGU...GGA-5'@LB@ | |@LB@ 187 159@LB@@LB@@LB@Energy -16.41 kcal/mol@LB@Hybridization Energy -23.7931 kcal/mol@LB@Unfolding Energy - mRNA 4.23572 kcal/mol@LB@Unfolding Energy - sRNA 9.57505 kcal/mol@LB@@LB@Position - mRNA 62 -- 87@LB@Position - sRNA 160 -- 186@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 177 -- 183@LB@ |
104 |
0.02699 |
0.6733 |
lmo1327 |
rbfA |
-16.36 |
0.054483 |
188 -- 240 |
157 -- 199 |
ribosome-binding factor A |
|
_____________187________________241\n_____________|__________________|\n5'-ACA...CGUGU_______CA_________AAGAA...CUG-3'\n______________CAGUGAG___AAUGAAAA\n______________||:||||___||||||||\n______________GUUACUC___UUACUUUU\n3'-GUU...UGCCG_______UAC________GUUUA...GGA-5'\n_____________|__________________|\n_____________200________________156\n |
234 -- 240 |
157 -- 163 |
-12.7883 kcal/mol |
2.00785 kcal/mol |
0.933292 kcal/mol |
187 241@LB@ | |@LB@5'-ACA...CGUGU CA AAGAA...CUG-3'@LB@ CAGUGAG AAUGAAAA@LB@ ||:|||| ||||||||@LB@ GUUACUC UUACUUUU@LB@3'-GUU...UGCCG UAC GUUUA...GGA-5'@LB@ | |@LB@ 200 156@LB@@LB@@LB@Energy -16.36 kcal/mol@LB@Hybridization Energy -12.7883 kcal/mol@LB@Unfolding Energy - mRNA 2.00785 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 157 -- 199@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 157 -- 163@LB@ |
165 |
0.04532 |
0.7392 |
lmo2091 |
argH |
-16.36 |
0.054421 |
189 -- 262 |
141 -- 199 |
argininosuccinate lyase |
|
_____________188_________________263\n_____________|___________________|\n5'-UCA...GGUCA_______G__GAG______AAAUC...AAG-3'\n______________UGCCAUU_UA___GGAAGA\n______________|||||||_||___||||||\n______________ACGGUAA_AU___CCUUCU\n3'-GUU...GAUCA_______G__AA_______ACCUA...GGA-5'\n_____________|___________________|\n_____________200_________________140\n |
20 -- 26 |
110 -- 116 |
-20.7676 kcal/mol |
3.64063 kcal/mol |
5.20705 kcal/mol |
188 263@LB@ | |@LB@5'-UCA...GGUCA G GAG AAAUC...AAG-3'@LB@ UGCCAUU UA GGAAGA@LB@ ||||||| || ||||||@LB@ ACGGUAA AU CCUUCU@LB@3'-GUU...GAUCA G AA ACCUA...GGA-5'@LB@ | |@LB@ 200 140@LB@@LB@@LB@Energy -16.36 kcal/mol@LB@Hybridization Energy -20.7676 kcal/mol@LB@Unfolding Energy - mRNA 3.64063 kcal/mol@LB@Unfolding Energy - sRNA 5.20705 kcal/mol@LB@@LB@Position - mRNA 189 -- 262@LB@Position - sRNA 141 -- 199@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 110 -- 116@LB@ |
70 |
0.01838 |
0.6733 |
lmo0265 |
N/A |
-16.33 |
0.055331 |
156 -- 199 |
158 -- 207 |
succinyl-diaminopimelate desuccinylase |
|
_____________155_____200\n_____________|_______|\n5'-UUU...UAGAG_______AAACA...UGU-3'\n______________AACGGGA\n______________|||||||\n______________UUGCCCU\n3'-GUU...ACGUA_______ACUCC...GGA-5'\n_____________|_______|\n_____________208_____157\n |
156 -- 162 |
201 -- 207 |
-11.1784 kcal/mol |
0.573427 kcal/mol |
0.326294 kcal/mol |
155 200@LB@ | |@LB@5'-UUU...UAGAG AAACA...UGU-3'@LB@ AACGGGA@LB@ |||||||@LB@ UUGCCCU@LB@3'-GUU...ACGUA ACUCC...GGA-5'@LB@ | |@LB@ 208 157@LB@@LB@@LB@Energy -16.33 kcal/mol@LB@Hybridization Energy -11.1784 kcal/mol@LB@Unfolding Energy - mRNA 0.573427 kcal/mol@LB@Unfolding Energy - sRNA 0.326294 kcal/mol@LB@@LB@Position - mRNA 156 -- 199@LB@Position - sRNA 158 -- 207@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 201 -- 207@LB@ |
166 |
0.04633 |
0.7403 |
lmo1152 |
N/A |
-16.33 |
0.055198 |
97 -- 188 |
95 -- 169 |
PduB protein |
|
_____________96_______________189\n_____________|________________|\n5'-GGC...AAGUC________________AAUAA...AAG-3'\n______________AGAUGAGUGA__GCAA\n______________||||||:|||__:|||\n______________UCUACUUACU__UGUU\n3'-GUU...GUUAC__________UU____UAUUA...GGA-5'\n_____________|________________|\n_____________170______________94\n |
100 -- 106 |
160 -- 166 |
-13.7881 kcal/mol |
2.27776 kcal/mol |
0.924402 kcal/mol |
96 189@LB@ | |@LB@5'-GGC...AAGUC AAUAA...AAG-3'@LB@ AGAUGAGUGA GCAA@LB@ ||||||:||| :|||@LB@ UCUACUUACU UGUU@LB@3'-GUU...GUUAC UU UAUUA...GGA-5'@LB@ | |@LB@ 170 94@LB@@LB@@LB@Energy -16.33 kcal/mol@LB@Hybridization Energy -13.7881 kcal/mol@LB@Unfolding Energy - mRNA 2.27776 kcal/mol@LB@Unfolding Energy - sRNA 0.924402 kcal/mol@LB@@LB@Position - mRNA 97 -- 188@LB@Position - sRNA 95 -- 169@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 160 -- 166@LB@ |
175 |
0.04975 |
0.7607 |
lmo0194 |
N/A |
-16.29 |
0.056201 |
181 -- 242 |
155 -- 212 |
ABC transporter ATP-binding protein |
|
_____________180________________________243\n_____________|__________________________|\n_______5'-AAGA________AAACGAAAAA________AAUUU...AGC-3'\n______________CAAUGGGA__________AGUGAAGA\n______________|||||:||__________|:||||:|\n______________GUUACUCU__________UUACUUUU\n3'-GUU...UGCCG________AC________________GUUUA...GGA-5'\n_____________|__________________________|\n_____________213________________________154\n |
24 -- 30 |
157 -- 163 |
-10.5893 kcal/mol |
0.67181 kcal/mol |
0.933292 kcal/mol |
180 243@LB@ | |@LB@ 5'-AAGA AAACGAAAAA AAUUU...AGC-3'@LB@ CAAUGGGA AGUGAAGA@LB@ |||||:|| |:||||:|@LB@ GUUACUCU UUACUUUU@LB@3'-GUU...UGCCG AC GUUUA...GGA-5'@LB@ | |@LB@ 213 154@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -10.5893 kcal/mol@LB@Unfolding Energy - mRNA 0.67181 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 181 -- 242@LB@Position - sRNA 155 -- 212@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 157 -- 163@LB@ |
159 |
0.04218 |
0.7139 |
lmo1454 |
rpoD |
-16.27 |
0.056776 |
172 -- 217 |
153 -- 211 |
RNA polymerase sigma factor RpoD |
|
_____________171_______________218\n_____________|_________________|\n5'-AGA...GUUAA___G________U____UAAUA...UAA-3'\n______________ACA_CGGCCAAU_GGAU\n______________|||_||||||||_:|||\n______________UGU_GCCGGUUA_UCUA\n3'-GUU...CUUGA____________C____CUUAC...GGA-5'\n_____________|_________________|\n_____________212_______________152\n |
92 -- 98 |
171 -- 177 |
-19.258 kcal/mol |
2.66151 kcal/mol |
6.2749 kcal/mol |
171 218@LB@ | |@LB@5'-AGA...GUUAA G U UAAUA...UAA-3'@LB@ ACA CGGCCAAU GGAU@LB@ ||| |||||||| :|||@LB@ UGU GCCGGUUA UCUA@LB@3'-GUU...CUUGA C CUUAC...GGA-5'@LB@ | |@LB@ 212 152@LB@@LB@@LB@Energy -16.27 kcal/mol@LB@Hybridization Energy -19.258 kcal/mol@LB@Unfolding Energy - mRNA 2.66151 kcal/mol@LB@Unfolding Energy - sRNA 6.2749 kcal/mol@LB@@LB@Position - mRNA 172 -- 217@LB@Position - sRNA 153 -- 211@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 171 -- 177@LB@ |
131 |
0.03528 |
0.6968 |
lmo0788 |
N/A |
-16.25 |
0.057193 |
177 -- 197 |
197 -- 213 |
lmo0788 |
|
_____________176______198\n_____________|________|\n5'-AAA...CGAAA________AAAAU...AUU-3'\n______________GGGAUGAG\n______________||||||||\n______________CCCUACUC\n3'-GUU...UAUUG________CGUAU...GGA-5'\n_____________|________|\n_____________214______196\n |
191 -- 197 |
197 -- 203 |
-13.9782 kcal/mol |
1.18818 kcal/mol |
0.386531 kcal/mol |
176 198@LB@ | |@LB@5'-AAA...CGAAA AAAAU...AUU-3'@LB@ GGGAUGAG@LB@ ||||||||@LB@ CCCUACUC@LB@3'-GUU...UAUUG CGUAU...GGA-5'@LB@ | |@LB@ 214 196@LB@@LB@@LB@Energy -16.25 kcal/mol@LB@Hybridization Energy -13.9782 kcal/mol@LB@Unfolding Energy - mRNA 1.18818 kcal/mol@LB@Unfolding Energy - sRNA 0.386531 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 197 -- 213@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 197 -- 203@LB@ |