67 |
0.01689 |
0.6733 |
lmo0335 |
N/A |
-16.81 |
0.044620 |
154 -- 214 |
153 -- 220 |
lmo0335 |
|
_____________153_____________________________________________________________215\n_____________|_______________________________________________________________|\n5'-AAA...CUACC______AUA______G____A____AUAUA______G_G____________A___________AUAAA...AUA-3'\n______________GGUGCU_____AUGA_GGGG__AGG_____CAUAGA_A_GAA__GCAU_GC_GAUGAGA_GAA\n______________||:||:_____||:|_|||:__|||_____||||||_|_|||__:||:_||_:||||||_|||\n______________CCGCGG_____UAUU_CCCU__UCC_____GUAUCU_U_CUU__UGUG_CG_UUACUCU_CUU\n3'-GUU...CAAGC______AUACG____G____AC______________G_A___GA____C__G_______A___ACUUU...GGA-5'\n_____________|_______________________________________________________________|\n_____________221_____________________________________________________________152\n |
200 -- 206 |
167 -- 173 |
-43.0643 kcal/mol |
10.4394 kcal/mol |
21.4092 kcal/mol |
153 215@LB@ | |@LB@5'-AAA...CUACC AUA G A AUAUA G G A AUAAA...AUA-3'@LB@ GGUGCU AUGA GGGG AGG CAUAGA A GAA GCAU GC GAUGAGA GAA@LB@ ||:||: ||:| |||: ||| |||||| | ||| :||: || :|||||| |||@LB@ CCGCGG UAUU CCCU UCC GUAUCU U CUU UGUG CG UUACUCU CUU@LB@3'-GUU...CAAGC AUACG G AC G A GA C G A ACUUU...GGA-5'@LB@ | |@LB@ 221 152@LB@@LB@@LB@Energy -16.81 kcal/mol@LB@Hybridization Energy -43.0643 kcal/mol@LB@Unfolding Energy - mRNA 10.4394 kcal/mol@LB@Unfolding Energy - sRNA 21.4092 kcal/mol@LB@@LB@Position - mRNA 154 -- 214@LB@Position - sRNA 153 -- 220@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 167 -- 173@LB@ |
127 |
0.03392 |
0.6968 |
lmo2096 |
N/A |
-16.75 |
0.045974 |
122 -- 137 |
183 -- 198 |
PTS galacticol transporter subunit IIC |
|
_____________121___________________138\n_____________|_____________________|\n5'-UAG...UUUCU____A__C_____________GAAGA...UGA-3'\n______________UAAC_GG_AUG_GGCAUGGAC\n______________||||_||_|||_|||||:|||\n______________AUUG_CC_UAC_CCGUAUCUG\n3'-GUU...UACGU____C______U_________UACUU...GGA-5'\n_____________|_____________________|\n_____________199___________________182\n |
129 -- 135 |
191 -- 197 |
-23.3255 kcal/mol |
4.68556 kcal/mol |
9.82628 kcal/mol |
121 138@LB@ | |@LB@5'-UAG...UUUCU A C GAAGA...UGA-3'@LB@ UAAC GG AUG GGCAUGGAC@LB@ |||| || ||| |||||:|||@LB@ AUUG CC UAC CCGUAUCUG@LB@3'-GUU...UACGU C U UACUU...GGA-5'@LB@ | |@LB@ 199 182@LB@@LB@@LB@Energy -16.75 kcal/mol@LB@Hybridization Energy -23.3255 kcal/mol@LB@Unfolding Energy - mRNA 4.68556 kcal/mol@LB@Unfolding Energy - sRNA 9.82628 kcal/mol@LB@@LB@Position - mRNA 122 -- 137@LB@Position - sRNA 183 -- 198@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 191 -- 197@LB@ |
56 |
0.01257 |
0.6043 |
lmo2205 |
N/A |
-16.72 |
0.046467 |
190 -- 249 |
147 -- 203 |
phosphoglyceromutase |
|
_____________189_____________________250\n_____________|_______________________|\n5'-AUG...GCGAA____GAA________________AAUUA...UGG-3'\n______________AAUG___GGAUGAG_GAAGAUGA\n______________||||___:|||||:_|||:|::|\n______________UUAC___UCUACUU_CUUUUGUU\n3'-GUU...GCCGG______________A________UAUUA...GGA-5'\n_____________|_______________________|\n_____________204_____________________146\n |
197 -- 203 |
155 -- 161 |
-13.1674 kcal/mol |
1.25432 kcal/mol |
0.959215 kcal/mol |
189 250@LB@ | |@LB@5'-AUG...GCGAA GAA AAUUA...UGG-3'@LB@ AAUG GGAUGAG GAAGAUGA@LB@ |||| :|||||: |||:|::|@LB@ UUAC UCUACUU CUUUUGUU@LB@3'-GUU...GCCGG A UAUUA...GGA-5'@LB@ | |@LB@ 204 146@LB@@LB@@LB@Energy -16.72 kcal/mol@LB@Hybridization Energy -13.1674 kcal/mol@LB@Unfolding Energy - mRNA 1.25432 kcal/mol@LB@Unfolding Energy - sRNA 0.959215 kcal/mol@LB@@LB@Position - mRNA 190 -- 249@LB@Position - sRNA 147 -- 203@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 155 -- 161@LB@ |
122 |
0.03252 |
0.6968 |
lmo0926 |
N/A |
-16.71 |
0.046694 |
198 -- 274 |
155 -- 207 |
TetR family transcriptional regulator |
|
_____________197______________275\n_____________|________________|\n5'-GCU...AACCA_____________G__GCGCC...UCG-3'\n______________AGAUGAGUGAAAA_CA\n______________||||||:||||||_||\n______________UCUACUUACUUUU_GU\n3'-GUU...GUUAC________________UUAUU...GGA-5'\n_____________|________________|\n_____________208______________154\n |
265 -- 271 |
157 -- 163 |
-16.1904 kcal/mol |
1.95479 kcal/mol |
0.920152 kcal/mol |
197 275@LB@ | |@LB@5'-GCU...AACCA G GCGCC...UCG-3'@LB@ AGAUGAGUGAAAA CA@LB@ ||||||:|||||| ||@LB@ UCUACUUACUUUU GU@LB@3'-GUU...GUUAC UUAUU...GGA-5'@LB@ | |@LB@ 208 154@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -16.1904 kcal/mol@LB@Unfolding Energy - mRNA 1.95479 kcal/mol@LB@Unfolding Energy - sRNA 0.920152 kcal/mol@LB@@LB@Position - mRNA 198 -- 274@LB@Position - sRNA 155 -- 207@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 157 -- 163@LB@ |
150 |
0.03884 |
0.6968 |
lmo1709 |
N/A |
-16.64 |
0.048121 |
221 -- 241 |
163 -- 181 |
methionine aminopeptidase |
|
_____________220__________242\n_____________|____________|\n5'-UCA...GAAAU____________AGCAG...CUG-3'\n______________CGAUGAGAUGAA\n______________|:||||||||||\n______________GUUACUCUACUU\n3'-GUU...UGCCG____________ACUUU...GGA-5'\n_____________|____________|\n_____________182__________162\n |
235 -- 241 |
163 -- 169 |
-15.3561 kcal/mol |
3.44721 kcal/mol |
0.694462 kcal/mol |
220 242@LB@ | |@LB@5'-UCA...GAAAU AGCAG...CUG-3'@LB@ CGAUGAGAUGAA@LB@ |:||||||||||@LB@ GUUACUCUACUU@LB@3'-GUU...UGCCG ACUUU...GGA-5'@LB@ | |@LB@ 182 162@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -15.3561 kcal/mol@LB@Unfolding Energy - mRNA 3.44721 kcal/mol@LB@Unfolding Energy - sRNA 0.694462 kcal/mol@LB@@LB@Position - mRNA 221 -- 241@LB@Position - sRNA 163 -- 181@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 163 -- 169@LB@ |
151 |
0.03914 |
0.6976 |
lmo1466 |
N/A |
-16.64 |
0.048271 |
185 -- 226 |
158 -- 202 |
|
|
_____________184_______________________________________________227\n_____________|_________________________________________________|\n5'-UGA...UUAGA____AGA__A_______A_____________________________G_UUGGU...UUC-3'\n______________GAGG___CA_AGAUGUG_AACUA____GCCAA_GA____AAUGGAGA_A\n______________||||___||_|||::||_|||||____|||||_||____||||:|:|_|\n______________CUCC___GU_UCUGUAC_UUGAU____CGGUU_CU____UUACUUUU_U\n3'-GUU...CCCUA_________A_____________GUGC_____A__CUAC________G_UUAUU...GGA-5'\n_____________|_________________________________________________|\n_____________203_______________________________________________157\n |
218 -- 224 |
157 -- 163 |
-27.6675 kcal/mol |
5.9878 kcal/mol |
13.9822 kcal/mol |
184 227@LB@ | |@LB@5'-UGA...UUAGA AGA A A G UUGGU...UUC-3'@LB@ GAGG CA AGAUGUG AACUA GCCAA GA AAUGGAGA A@LB@ |||| || |||::|| ||||| ||||| || ||||:|:| |@LB@ CUCC GU UCUGUAC UUGAU CGGUU CU UUACUUUU U@LB@3'-GUU...CCCUA A GUGC A CUAC G UUAUU...GGA-5'@LB@ | |@LB@ 203 157@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -27.6675 kcal/mol@LB@Unfolding Energy - mRNA 5.9878 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 185 -- 226@LB@Position - sRNA 158 -- 202@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 157 -- 163@LB@ |
92 |
0.02404 |
0.6733 |
lmo1947 |
resE |
-16.63 |
0.048416 |
181 -- 212 |
141 -- 170 |
two-component sensor histidine kinas |
|
_____________180_________________213\n_____________|___________________|\n5'-AAG...ACCGA_______AUA_________UUGGA...UUU-3'\n______________GGUGAGA___GAUGAAGAU\n______________::|||||___:|||||:|:\n______________UUACUCU___UUACUUUUG\n3'-GUU...GCCGG_______AC__________UUUAU...GGA-5'\n_____________|___________________|\n_____________171_________________140\n |
202 -- 208 |
156 -- 162 |
-13.4823 kcal/mol |
2.25638 kcal/mol |
0.941471 kcal/mol |
180 213@LB@ | |@LB@5'-AAG...ACCGA AUA UUGGA...UUU-3'@LB@ GGUGAGA GAUGAAGAU@LB@ ::||||| :|||||:|:@LB@ UUACUCU UUACUUUUG@LB@3'-GUU...GCCGG AC UUUAU...GGA-5'@LB@ | |@LB@ 171 140@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -13.4823 kcal/mol@LB@Unfolding Energy - mRNA 2.25638 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 181 -- 212@LB@Position - sRNA 141 -- 170@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 156 -- 162@LB@ |
176 |
0.04979 |
0.7607 |
lmo1340 |
N/A |
-16.63 |
0.048446 |
193 -- 216 |
151 -- 177 |
|
|
_____________192_____________217\n_____________|_______________|\n5'-UGC...UUGGA_______________AAAAU...CUG-3'\n______________GGCCA__GAGAUGAA\n______________|||||__||||||||\n______________CCGGU__CUCUACUU\n3'-GUU...AUGUG_____UA________ACUUU...GGA-5'\n_____________|_______________|\n_____________178_____________150\n |
199 -- 205 |
163 -- 169 |
-19.0992 kcal/mol |
1.80937 kcal/mol |
7.44208 kcal/mol |
192 217@LB@ | |@LB@5'-UGC...UUGGA AAAAU...CUG-3'@LB@ GGCCA GAGAUGAA@LB@ ||||| ||||||||@LB@ CCGGU CUCUACUU@LB@3'-GUU...AUGUG UA ACUUU...GGA-5'@LB@ | |@LB@ 178 150@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -19.0992 kcal/mol@LB@Unfolding Energy - mRNA 1.80937 kcal/mol@LB@Unfolding Energy - sRNA 7.44208 kcal/mol@LB@@LB@Position - mRNA 193 -- 216@LB@Position - sRNA 151 -- 177@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
144 |
0.03753 |
0.6968 |
lmo2422 |
N/A |
-16.62 |
0.048504 |
29 -- 68 |
172 -- 209 |
two-component response regulator |
|
_____________28___________________________________69\n_____________|____________________________________|\n5'-AUG...AUUCG____________AAAU_______G___U________UUUAU...AUG-3'\n______________CUAUGU__GACG____UGAGGCA_AGA_UAUGAAUU\n______________|||||:__:|||____|||||||_|||_:|||||:|\n______________GAUACG__UUGC____ACUCCGU_UCU_GUACUUGA\n3'-GUU...CCGCG______UA____CCU________A____________UGUGC...GGA-5'\n_____________|____________________________________|\n_____________210__________________________________171\n |
39 -- 45 |
194 -- 200 |
-29.3631 kcal/mol |
6.47642 kcal/mol |
13.3074 kcal/mol |
28 69@LB@ | |@LB@5'-AUG...AUUCG AAAU G U UUUAU...AUG-3'@LB@ CUAUGU GACG UGAGGCA AGA UAUGAAUU@LB@ |||||: :||| ||||||| ||| :|||||:|@LB@ GAUACG UUGC ACUCCGU UCU GUACUUGA@LB@3'-GUU...CCGCG UA CCU A UGUGC...GGA-5'@LB@ | |@LB@ 210 171@LB@@LB@@LB@Energy -16.62 kcal/mol@LB@Hybridization Energy -29.3631 kcal/mol@LB@Unfolding Energy - mRNA 6.47642 kcal/mol@LB@Unfolding Energy - sRNA 13.3074 kcal/mol@LB@@LB@Position - mRNA 29 -- 68@LB@Position - sRNA 172 -- 209@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 194 -- 200@LB@ |
125 |
0.03321 |
0.6968 |
lmo2357 |
N/A |
-16.59 |
0.049158 |
2 -- 27 |
152 -- 176 |
|
|
_____________1_____________________28\n_____________|_____________________|\n_______5'-AGCU___AU________C_______AUCUU...CAC-3'\n______________GAU__GAUGGAUG_AAAACAA\n______________:||__||||:|||_|||||||\n______________UUA__CUACUUAC_UUUUGUU\n3'-GUU...GCCGG___CU________________UAUUA...GGA-5'\n_____________|_____________________|\n_____________177___________________151\n |
19 -- 25 |
154 -- 160 |
-15.1634 kcal/mol |
3.68151 kcal/mol |
0.959215 kcal/mol |
1 28@LB@ | |@LB@ 5'-AGCU AU C AUCUU...CAC-3'@LB@ GAU GAUGGAUG AAAACAA@LB@ :|| ||||:||| |||||||@LB@ UUA CUACUUAC UUUUGUU@LB@3'-GUU...GCCGG CU UAUUA...GGA-5'@LB@ | |@LB@ 177 151@LB@@LB@@LB@Energy -16.59 kcal/mol@LB@Hybridization Energy -15.1634 kcal/mol@LB@Unfolding Energy - mRNA 3.68151 kcal/mol@LB@Unfolding Energy - sRNA 0.959215 kcal/mol@LB@@LB@Position - mRNA 2 -- 27@LB@Position - sRNA 152 -- 176@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 154 -- 160@LB@ |