93 |
0.02416 |
0.6733 |
lmo2042 |
N/A |
-17.13 |
0.038629 |
149 -- 196 |
158 -- 206 |
cell division protein MraZ |
|
_____________148_____________________________________________197\n_____________|_______________________________________________|\n5'-UUU...GCGAA_________________UAAAG_____AUGU____AA__________UCUAA...CCC-3'\n______________GUGGGG___AGAUGUGG______UGGU____AUGA__GUGGGUGAAG\n______________:||:||___|||::||:______:||:____||||__:||::||||:\n______________UACUCC___UCUGUACU______GCCG____UACU__UACUUACUUU\n3'-GUU...UGCCC______GUA________UGAUGU____GU______C___________UGUUU...GGA-5'\n_____________|_______________________________________________|\n_____________207_____________________________________________157\n |
190 -- 196 |
158 -- 164 |
-27.738 kcal/mol |
5.20754 kcal/mol |
13.9391 kcal/mol |
148 197@LB@ | |@LB@5'-UUU...GCGAA UAAAG AUGU AA UCUAA...CCC-3'@LB@ GUGGGG AGAUGUGG UGGU AUGA GUGGGUGAAG@LB@ :||:|| |||::||: :||: |||| :||::||||:@LB@ UACUCC UCUGUACU GCCG UACU UACUUACUUU@LB@3'-GUU...UGCCC GUA UGAUGU GU C UGUUU...GGA-5'@LB@ | |@LB@ 207 157@LB@@LB@@LB@Energy -17.13 kcal/mol@LB@Hybridization Energy -27.738 kcal/mol@LB@Unfolding Energy - mRNA 5.20754 kcal/mol@LB@Unfolding Energy - sRNA 13.9391 kcal/mol@LB@@LB@Position - mRNA 149 -- 196@LB@Position - sRNA 158 -- 206@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 158 -- 164@LB@ |
87 |
0.02294 |
0.6733 |
lmo2765 |
N/A |
-17.07 |
0.039744 |
188 -- 213 |
176 -- 199 |
PTS cellbiose transporter subunit IIA |
|
_____________187_________________214\n_____________|___________________|\n5'-UUA...UAGAC________A__________GUUAU...AUU-3'\n______________AUGA_AUG_AAUGGAAACA\n______________||||_|||_||||:|||||\n______________UACU_UAC_UUACUUUUGU\n3'-GUU...CCGGU____C______________UUAUU...GGA-5'\n_____________|___________________|\n_____________200_________________175\n |
212 -- 218 |
155 -- 161 |
-13.3886 kcal/mol |
2.47541 kcal/mol |
0.935542 kcal/mol |
187 214@LB@ | |@LB@5'-UUA...UAGAC A GUUAU...AUU-3'@LB@ AUGA AUG AAUGGAAACA@LB@ |||| ||| ||||:|||||@LB@ UACU UAC UUACUUUUGU@LB@3'-GUU...CCGGU C UUAUU...GGA-5'@LB@ | |@LB@ 200 175@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -13.3886 kcal/mol@LB@Unfolding Energy - mRNA 2.47541 kcal/mol@LB@Unfolding Energy - sRNA 0.935542 kcal/mol@LB@@LB@Position - mRNA 188 -- 213@LB@Position - sRNA 176 -- 199@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 155 -- 161@LB@ |
83 |
0.02274 |
0.6733 |
lmo1752 |
N/A |
-17.06 |
0.039898 |
184 -- 210 |
151 -- 173 |
lmo1752 |
|
_____________183___________211\n_____________|_____________|\n5'-CUA...CAAGA_____________CGAUA...CAG-3'\n______________AAUGAGGUGAAUG\n______________||||||:||||||\n______________UUACUCUACUUAC\n3'-GUU...GCCGG_____________UUUUG...GGA-5'\n_____________|_____________|\n_____________174___________150\n |
190 -- 196 |
161 -- 167 |
-16.9304 kcal/mol |
1.40294 kcal/mol |
0.838004 kcal/mol |
183 211@LB@ | |@LB@5'-CUA...CAAGA CGAUA...CAG-3'@LB@ AAUGAGGUGAAUG@LB@ ||||||:||||||@LB@ UUACUCUACUUAC@LB@3'-GUU...GCCGG UUUUG...GGA-5'@LB@ | |@LB@ 174 150@LB@@LB@@LB@Energy -17.06 kcal/mol@LB@Hybridization Energy -16.9304 kcal/mol@LB@Unfolding Energy - mRNA 1.40294 kcal/mol@LB@Unfolding Energy - sRNA 0.838004 kcal/mol@LB@@LB@Position - mRNA 184 -- 210@LB@Position - sRNA 151 -- 173@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 161 -- 167@LB@ |
120 |
0.03214 |
0.6968 |
lmo0368 |
N/A |
-17.05 |
0.040150 |
163 -- 213 |
95 -- 164 |
|
|
_____________162______________________________________________214\n_____________|________________________________________________|\n5'-UGC...AAUGA_____A_____AA_______AGGGA___G______G_______A____AUUUG...UUC-3'\n______________AAGCA___GUC__UGAUUAG_____GCC_AUUUUA_UGGAAGA_UGGG\n______________||:||___|||__|||:|||_____|||_|||:||_|||||||_|||:\n______________UUUGU___CAG__ACUGAUC_____CGG_UAAGAU_ACCUUCU_ACCU\n3'-GUU...ACAGA_____CUA____________AA_____________A____________AUGUG...GGA-5'\n_____________|________________________________________________|\n_____________165______________________________________________94\n |
202 -- 208 |
99 -- 105 |
-32.1999 kcal/mol |
10.9316 kcal/mol |
9.49359 kcal/mol |
162 214@LB@ | |@LB@5'-UGC...AAUGA A AA AGGGA G G A AUUUG...UUC-3'@LB@ AAGCA GUC UGAUUAG GCC AUUUUA UGGAAGA UGGG@LB@ ||:|| ||| |||:||| ||| |||:|| ||||||| |||:@LB@ UUUGU CAG ACUGAUC CGG UAAGAU ACCUUCU ACCU@LB@3'-GUU...ACAGA CUA AA A AUGUG...GGA-5'@LB@ | |@LB@ 165 94@LB@@LB@@LB@Energy -17.05 kcal/mol@LB@Hybridization Energy -32.1999 kcal/mol@LB@Unfolding Energy - mRNA 10.9316 kcal/mol@LB@Unfolding Energy - sRNA 9.49359 kcal/mol@LB@@LB@Position - mRNA 163 -- 213@LB@Position - sRNA 95 -- 164@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 99 -- 105@LB@ |
102 |
0.02619 |
0.6733 |
lmo1799 |
N/A |
-17.02 |
0.040600 |
38 -- 69 |
171 -- 207 |
peptidoglycan binding protein |
|
_____________37______________70\n_____________|_______________|\n5'-CUA...AAAAC__G____________UUGGC...UGG-3'\n______________GA_GGGA_GGGGCAU\n______________:|_||||_|:|||||\n______________UU_CCCU_CUCCGUA\n3'-GUU...ACGUA__G____A_______UCUGU...GGA-5'\n_____________|_______________|\n_____________208_____________170\n |
45 -- 51 |
193 -- 199 |
-19.1902 kcal/mol |
1.80232 kcal/mol |
8.95053 kcal/mol |
37 70@LB@ | |@LB@5'-CUA...AAAAC G UUGGC...UGG-3'@LB@ GA GGGA GGGGCAU@LB@ :| |||| |:|||||@LB@ UU CCCU CUCCGUA@LB@3'-GUU...ACGUA G A UCUGU...GGA-5'@LB@ | |@LB@ 208 170@LB@@LB@@LB@Energy -17.02 kcal/mol@LB@Hybridization Energy -19.1902 kcal/mol@LB@Unfolding Energy - mRNA 1.80232 kcal/mol@LB@Unfolding Energy - sRNA 8.95053 kcal/mol@LB@@LB@Position - mRNA 38 -- 69@LB@Position - sRNA 171 -- 207@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 193 -- 199@LB@ |
65 |
0.01641 |
0.6733 |
lmo0040 |
N/A |
-17.01 |
0.040772 |
52 -- 100 |
171 -- 220 |
agmatine deiminase |
|
_____________51______________101\n_____________|_______________|\n5'-GUC...AAUAG____A__________GGGAC...CUG-3'\n______________GAGG_GAAUGAGGAU\n______________|||:_||||||::|:\n______________CUCU_CUUACUUUUG\n3'-GUU...GGUUA____A__________UUUAU...GGA-5'\n_____________|_______________|\n_____________221_____________170\n |
196 -- 202 |
156 -- 162 |
-15.5399 kcal/mol |
0.994344 kcal/mol |
0.916023 kcal/mol |
51 101@LB@ | |@LB@5'-GUC...AAUAG A GGGAC...CUG-3'@LB@ GAGG GAAUGAGGAU@LB@ |||: ||||||::|:@LB@ CUCU CUUACUUUUG@LB@3'-GUU...GGUUA A UUUAU...GGA-5'@LB@ | |@LB@ 221 170@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -15.5399 kcal/mol@LB@Unfolding Energy - mRNA 0.994344 kcal/mol@LB@Unfolding Energy - sRNA 0.916023 kcal/mol@LB@@LB@Position - mRNA 52 -- 100@LB@Position - sRNA 171 -- 220@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 156 -- 162@LB@ |
45 |
0.0103 |
0.599 |
lmo0066 |
N/A |
-17.00 |
0.040990 |
179 -- 207 |
157 -- 199 |
toxin |
|
_____________178___________208\n_____________|_____________|\n5'-AAA...AGGCC_____________AAGUC...AUU-3'\n______________AGAUGAAUGAAAG\n______________||||||||||||:\n______________UCUACUUACUUUU\n3'-GUU...GUUAC_____________GUUUA...GGA-5'\n_____________|_____________|\n_____________200___________156\n |
201 -- 207 |
157 -- 163 |
-14.7839 kcal/mol |
1.76886 kcal/mol |
0.884237 kcal/mol |
178 208@LB@ | |@LB@5'-AAA...AGGCC AAGUC...AUU-3'@LB@ AGAUGAAUGAAAG@LB@ ||||||||||||:@LB@ UCUACUUACUUUU@LB@3'-GUU...GUUAC GUUUA...GGA-5'@LB@ | |@LB@ 200 156@LB@@LB@@LB@Energy -17.00 kcal/mol@LB@Hybridization Energy -14.7839 kcal/mol@LB@Unfolding Energy - mRNA 1.76886 kcal/mol@LB@Unfolding Energy - sRNA 0.884237 kcal/mol@LB@@LB@Position - mRNA 179 -- 207@LB@Position - sRNA 157 -- 199@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 157 -- 163@LB@ |
135 |
0.03605 |
0.6968 |
lmo1003 |
N/A |
-16.96 |
0.041836 |
78 -- 154 |
154 -- 221 |
phosphotransferase system enzyme I |
|
_____________77_______________________________________________________________________________________155\n_____________|________________________________________________________________________________________|\n5'-GUG...CUUAA____AUCA_____________CUCUUG___U___UAA______CU_____UACUAU______U_AA___A_C______AAA_______UUGAA...AAG-3'\n______________AUCA____UGGGCG_UUAUGU______GUA_UGG____AGGCG__GACAU______CUACAC_G__GGU_G_GAUGAA___GAAGCAA\n______________||||____:|||||_:||||:______:||_:||____||||:__|||||______||||||_|__::|_|_||||||___:||:|||\n______________UAGU____GCCCGC_GAUACG______UAU_GCC____UCCGU__CUGUA______GAUGUG_C__UUA_C_CUACUU___UUUUGUU\n3'-GUU...AACGG____ACAA______G_______________U___CUAC_____AU_____CUU_________C_GG_____U______AC________UAUUA...GGA-5'\n_____________|________________________________________________________________________________________|\n_____________222______________________________________________________________________________________153\n |
148 -- 154 |
154 -- 160 |
-50.8348 kcal/mol |
18.1196 kcal/mol |
22.592 kcal/mol |
77 155@LB@ | |@LB@5'-GUG...CUUAA AUCA CUCUUG U UAA CU UACUAU U AA A C AAA UUGAA...AAG-3'@LB@ AUCA UGGGCG UUAUGU GUA UGG AGGCG GACAU CUACAC G GGU G GAUGAA GAAGCAA@LB@ |||| :||||| :||||: :|| :|| ||||: ||||| |||||| | ::| | |||||| :||:|||@LB@ UAGU GCCCGC GAUACG UAU GCC UCCGU CUGUA GAUGUG C UUA C CUACUU UUUUGUU@LB@3'-GUU...AACGG ACAA G U CUAC AU CUU C GG U AC UAUUA...GGA-5'@LB@ | |@LB@ 222 153@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -50.8348 kcal/mol@LB@Unfolding Energy - mRNA 18.1196 kcal/mol@LB@Unfolding Energy - sRNA 22.592 kcal/mol@LB@@LB@Position - mRNA 78 -- 154@LB@Position - sRNA 154 -- 221@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 154 -- 160@LB@ |
142 |
0.03693 |
0.6968 |
lmo2586 |
N/A |
-16.96 |
0.041696 |
196 -- 266 |
151 -- 227 |
formate dehydrogenase subunit alpha |
|
_____________195______267\n_____________|________|\n5'-UUU...GUGGC________UGGUG...AUC-3'\n______________GCGGGAUG\n______________:|||||||\n______________UGCCCUAC\n3'-GUU...CGUAU________UCCGU...GGA-5'\n_____________|________|\n_____________228______150\n |
240 -- 246 |
199 -- 205 |
-13.0644 kcal/mol |
3.68871 kcal/mol |
0.331032 kcal/mol |
195 267@LB@ | |@LB@5'-UUU...GUGGC UGGUG...AUC-3'@LB@ GCGGGAUG@LB@ :|||||||@LB@ UGCCCUAC@LB@3'-GUU...CGUAU UCCGU...GGA-5'@LB@ | |@LB@ 228 150@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -13.0644 kcal/mol@LB@Unfolding Energy - mRNA 3.68871 kcal/mol@LB@Unfolding Energy - sRNA 0.331032 kcal/mol@LB@@LB@Position - mRNA 196 -- 266@LB@Position - sRNA 151 -- 227@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 199 -- 205@LB@ |
155 |
0.04112 |
0.7058 |
lmo1165 |
N/A |
-16.89 |
0.043077 |
88 -- 150 |
155 -- 206 |
ethanolamine utilization protein EutE |
|
_____________87_______________________________151\n_____________|________________________________|\n5'-AAG...AAUGG____________G___C_______G_______UCCAC...CAA-3'\n______________GGAUUA_GCGGC_GAU_AG_UGGA_GAAGAUA\n______________|:|:||_:||||_:||_||_||:|_|||:|:|\n______________CUUGAU_UGCCG_UUA_UC_ACUU_CUUUUGU\n3'-GUU...CUGUA______G_____G___C__U____A_______UUAUU...GGA-5'\n_____________|________________________________|\n_____________207______________________________154\n |
144 -- 150 |
155 -- 161 |
-24.1777 kcal/mol |
5.41964 kcal/mol |
9.66922 kcal/mol |
87 151@LB@ | |@LB@5'-AAG...AAUGG G C G UCCAC...CAA-3'@LB@ GGAUUA GCGGC GAU AG UGGA GAAGAUA@LB@ |:|:|| :|||| :|| || ||:| |||:|:|@LB@ CUUGAU UGCCG UUA UC ACUU CUUUUGU@LB@3'-GUU...CUGUA G G C U A UUAUU...GGA-5'@LB@ | |@LB@ 207 154@LB@@LB@@LB@Energy -16.89 kcal/mol@LB@Hybridization Energy -24.1777 kcal/mol@LB@Unfolding Energy - mRNA 5.41964 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 88 -- 150@LB@Position - sRNA 155 -- 206@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 155 -- 161@LB@ |