Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 7715023

Input and runtime details for job 7715023 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 7715023 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:34:36 CET 2014
?Processing Started@ Mon Oct 27 22:16:51 CET 2014
?CopraRNA Finished & Post-Processing@ Tue Oct 28 02:22:06 CET 2014
?Post-Processing Finished@ Tue Oct 28 02:22:06 CET 2014
?Job Completed@ Tue Oct 28 02:22:45 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=7715023&toolName=CopraRNA ( 30 days expiry )

The job description you specified

Spot42

Output download complete results [zip]

Downloadable files

[csv]
[txt]
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[png] [pdf] [ps]
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[html] [pdf]
[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 1.686e-05 0.06146 b0728 sucC -9.16 0.053870 181 -- 192 23 -- 34 succinyl-CoA synthetase beta subunit   0
2 5.651e-05 0.06835 b3291 mscL -6.44 0.289280 48 -- 58 55 -- 65 mechanosensitive channel protein high conductance   0
3 6.985e-05 0.06835 b1487 ddpA -9.04 0.058717 261 -- 268 49 -- 56 D-ala-D-a la transporter subunit   3
4 8.661e-05 0.06835 b0757 galK -16.32 0.000061 183 -- 236 5 -- 60 galactokinase   0
5 0.0002492 0.1412 b0420 dxs -9.84 0.033022 24 -- 31 1 -- 8 1-deoxyxylulose-5-phosphate synthase thiamine triphosphate-binding FAD-requiring   0
6 0.0002954 0.1412 b0720 gltA -9.38 0.046297 70 -- 79 4 -- 13 citrate synthase   0
7 0.0003099 0.1412 b3863 polA -9.24 0.050989 232 -- 255 10 -- 34 fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease   0
8 0.0003616 0.1465 b2789 gudP -8.41 0.089588 121 -- 127 1 -- 7 putative D-glucarate transporter   3
9 0.0007105 0.2252 b0425 panE -13.69 0.001200 22 -- 47 3 -- 32 2-dehydropantoate reductase NADPH-specific   0
10 0.0008026 0.2252 b1310 ycjN -10.62 0.018241 112 -- 129 42 -- 60 putative ABC superfamily sugar transporter periplasmic-binding protein   4

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1