Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 5882223

Input and runtime details for job 5882223 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 5882223 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:29:59 CET 2018
?Processing Started@ Fri Feb 16 20:39:56 CET 2018
?CopraRNA Finished & Post-Processing@ Sat Feb 17 03:02:39 CET 2018
?Post-Processing Finished@ Sat Feb 17 03:02:47 CET 2018
?Job Completed@ Sat Feb 17 03:03:15 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=5882223&toolName=CopraRNA ( 30 days expiry )

The job description you specified

Spot42

Output download complete results [zip]

Downloadable files

[csv]
[txt]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b0757 galK -15.06 0.000658 183 -- 231 8 -- 60 galactokinase  
2 0 0 b0796 ybiH -7.52 0.201543 119 -- 140 54 -- 76 DUF1956 domain-containing tetR family putative transcriptional regulator b1013
3 0 0 b2564 pdxJ -5.03 0.588876 273 -- 283 52 -- 62 pyridoxine 5'-phosphate synthase  
4 8.02e-06 0.007054 b0425 panE -14.83 0.000836 22 -- 49 1 -- 32 2-dehydropantoate reductase NADPH-specific  
5 1.055e-05 0.007422 b1287 yciW -9.98 0.045809 266 -- 289 4 -- 27 putative oxidoreductase  
6 1.448e-05 0.00754 b3863 polA -11.40 0.016745 236 -- 262 1 -- 29 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease  
7 1.5e-05 0.00754 b0720 gltA -8.97 0.087950 70 -- 79 4 -- 13 citrate synthase  
8 1.842e-05 0.007771 b2797 sdaB -15.07 0.000654 133 -- 147 55 -- 69 L-serine dehydratase 2  
9 1.988e-05 0.007771 b1985 yeeO -11.51 0.015356 224 -- 255 1 -- 39 putative multdrug exporter MATE family  
10 2.605e-05 0.009165 b3599 mtlA -16.58 0.000118 1 -- 31 4 -- 28 mannitol-specific PTS enzyme: IIA IIB and IIC components  

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.1.2