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CopraRNA 5882223

Input and runtime details for job 5882223 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 5882223 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:29:59 CET 2018
?CopraRNA Started@ Fri Feb 16 20:39:56 CET 2018
?CopraRNA Finished & Post-Processing@ Sat Feb 17 03:02:39 CET 2018
?Post-Processing Finished@ Sat Feb 17 03:02:47 CET 2018
?Job Completed@ Sat Feb 17 03:03:15 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=5882223&toolName=CopraRNA ( 30 days expiry )

Description of the job

Spot42

Output download complete results [zip]

Downloadable files

[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b0757 galK -15.06 0.000658 183 -- 231 8 -- 60 galactokinase  
2 0 0 b0796 ybiH -7.52 0.201543 119 -- 140 54 -- 76 DUF1956 domain-containing tetR family putative transcriptional regulator b1013
3 0 0 b2564 pdxJ -5.03 0.588876 273 -- 283 52 -- 62 pyridoxine 5'-phosphate synthase  
4 8.02e-06 0.007054 b0425 panE -14.83 0.000836 22 -- 49 1 -- 32 2-dehydropantoate reductase NADPH-specific  
5 1.055e-05 0.007422 b1287 yciW -9.98 0.045809 266 -- 289 4 -- 27 putative oxidoreductase  
6 1.448e-05 0.00754 b3863 polA -11.40 0.016745 236 -- 262 1 -- 29 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease  
7 1.5e-05 0.00754 b0720 gltA -8.97 0.087950 70 -- 79 4 -- 13 citrate synthase  
8 1.842e-05 0.007771 b2797 sdaB -15.07 0.000654 133 -- 147 55 -- 69 L-serine dehydratase 2  
9 1.988e-05 0.007771 b1985 yeeO -11.51 0.015356 224 -- 255 1 -- 39 putative multdrug exporter MATE family  
10 2.605e-05 0.009165 b3599 mtlA -16.58 0.000118 1 -- 31 4 -- 28 mannitol-specific PTS enzyme: IIA IIB and IIC components  
11 3.674e-05 0.01134 b2099 yegU -10.44 0.033453 166 -- 229 3 -- 59 ADP-ribosylglycohydrolase family protein  
12 3.867e-05 0.01134 b0728 sucC -9.87 0.049323 145 -- 186 43 -- 73 succinyl-CoA synthetase beta subunit  
13 4.485e-05 0.01183 b0511 ybbW -13.60 0.002717 173 -- 210 18 -- 58 putative allantoin transporter  
14 5.486e-05 0.01183 b0420 dxs -9.76 0.053178 24 -- 31 1 -- 8 1-deoxyxylulose-5-phosphate synthase thiamine triphosphate-binding FAD-requiring  
15 5.569e-05 0.01183 b1761 gdhA -12.26 0.008568 280 -- 294 40 -- 56 glutamate dehydrogenase NADP-specific  
16 5.617e-05 0.01183 b0116 lpd -12.59 0.006546 264 -- 293 29 -- 63 dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase  
17 5.719e-05 0.01183 b3675 yidG -12.05 0.010096 82 -- 130 1 -- 56 inner membrane protein  
18 6.719e-05 0.01313 b2935 tktA -10.85 0.025018 263 -- 275 52 -- 64 transketolase 1 thiamine triphosphate-binding  
19 8.831e-05 0.01635 b3389 aroB -10.54 0.031183 4 -- 17 42 -- 56 3-dehydroquinate synthase  
20 9.41e-05 0.01655 b0721 sdhC -12.56 0.006704 146 -- 157 4 -- 15 succinate dehydrogenase membrane subunit binds cytochrome b556  
21 0.0001601 0.02641 b2344 fadL -13.31 0.003531 80 -- 135 1 -- 58 long-chain fatty acid outer membrane transporter  
22 0.0001652 0.02641 b3566 xylF -9.94 0.047349 202 -- 240 1 -- 33 D-xylose transporter subunit  
23 0.0001777 0.02687 b0774 bioA -12.72 0.005870 209 -- 228 5 -- 24 7 8-diaminopelargonic acid synthase PLP-dependent  
24 0.0002009 0.02687 b1487 ddpA -9.43 0.065911 261 -- 269 48 -- 56 D D-dipeptide ABC transporter periplasmic binding protein  
25 0.0002052 0.02687 b0885 aat -14.70 0.000956 173 -- 191 42 -- 59 leucyl/phenylalanyl-tRNA-protein transferase  
26 0.0002109 0.02687 b4122 fumB -13.50 0.002989 276 -- 286 47 -- 57 anaerobic class I fumarate hydratase (fumarase B) b1612
27 0.0002115 0.02687 b2607 trmD -14.32 0.001383 229 -- 258 48 -- 75 tRNA m(1)G37 methyltransferase SAM-dependent  
28 0.0002139 0.02687 b4174 hflK -10.82 0.025576 125 -- 140 42 -- 58 modulator for HflB protease specific for phage lambda cII repressor  
29 0.0002348 0.02849 b4015 aceA -10.12 0.041760 186 -- 214 1 -- 27 isocitrate lyase  
30 0.0002612 0.03063 b3789 rffH -9.15 0.078548 244 -- 254 48 -- 58 glucose-1-phosphate thymidylyltransferase  
31 0.0003178 0.03519 b3588 aldB -11.98 0.010708 83 -- 100 1 -- 16 aldehyde dehydrogenase B  
32 0.0003261 0.03519 b2789 gudP -8.38 0.124980 121 -- 127 1 -- 7 putative D-glucarate transporter  
33 0.0003369 0.03519 b0523 purE -12.01 0.010423 150 -- 160 3 -- 13 N5-carboxyaminoimidazole ribonucleotide mutase  
34 0.0003499 0.03519 b0333 prpC -9.01 0.085770 169 -- 175 1 -- 7 2-methylcitrate synthase  
35 0.0003501 0.03519 b2700 pncC -8.73 0.102058 11 -- 28 20 -- 37 nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase  
36 0.0003681 0.03584 b1136 icd -11.32 0.017792 275 -- 286 49 -- 60 isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase  
37 0.0003769 0.03584 b1212 prmC -14.52 0.001141 215 -- 228 43 -- 56 RF-1 and RF-2 N5-glutamine methyltransferase  
38 0.0004278 0.03766 b3092 uxaC -12.53 0.006845 206 -- 269 1 -- 57 uronate isomerase  
39 0.0004396 0.03766 b3669 uhpA -8.50 0.116685 77 -- 96 47 -- 66 response regulator in two-component regulatory system wtih UhpB  
40 0.0004513 0.03766 b3291 mscL -6.99 0.263134 48 -- 58 55 -- 65 mechanosensitive channel protein high conductance  
41 0.000458 0.03766 b3679 yidK -16.91 0.000078 119 -- 159 1 -- 60 putative transporter  
42 0.0004615 0.03766 b3341 rpsG -11.13 0.020425 227 -- 249 53 -- 76 30S ribosomal subunit protein S7  
43 0.0004631 0.03766 b4346 mcrB -12.47 0.007188 270 -- 300 1 -- 31 5-methylcytosine-specific restriction enzyme McrBC subunit McrB  
44 0.000471 0.03766 b3624 waaZ -7.10 0.250129 289 -- 295 1 -- 7 lipopolysaccharide KdoIII transferase; lipopolysaccharide core biosynthesis protein  
45 0.0004826 0.03773 b4133 cadC -9.27 0.072737 38 -- 110 5 -- 66 cadBA operon transcriptional activator  
46 0.0005017 0.03778 b1713 pheT -7.80 0.173677 95 -- 107 17 -- 29 phenylalanine tRNA synthetase beta subunit  
47 0.0005047 0.03778 b1888 cheA -10.26 0.037926 179 -- 191 53 -- 66 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein  
48 0.0005438 0.03933 b0811 glnH -6.95 0.268265 70 -- 77 1 -- 8 glutamine transporter subunit  
49 0.0005477 0.03933 b2715 ascF -9.59 0.059292 173 -- 180 1 -- 8 cellobiose/arbutin/salicin-specific PTS enzymes IIB and IC components  
50 0.0006038 0.04249 b3755 yieP -5.20 0.556147 189 -- 196 25 -- 32 putative transcriptional regulator  
51 0.0006491 0.04477 b3224 nanT -16.25 0.000177 140 -- 151 1 -- 12 sialic acid transporter b4279
52 0.0006736 0.04557 b3964 yijD -9.23 0.074829 177 -- 192 43 -- 57 DUF1422 family inner membrane protein  
53 0.0007581 0.04961 b1302 puuE -16.93 0.000076 166 -- 207 20 -- 57 4-aminobutyrate aminotransferase PLP-dependent b2662
54 0.0007615 0.04961 b0313 betI -7.44 0.209816 47 -- 68 32 -- 57 choline-inducible betIBA-betT divergent operon transcriptional repressor  
55 0.0008105 0.05184 b3262 yhdJ -10.49 0.032282 53 -- 83 1 -- 34 DNA adenine methyltransferase SAM-dependent  
56 0.0008344 0.05242 b3651 trmH -7.19 0.238334 68 -- 84 17 -- 32 tRNA mG18-2'-O-methyltransferase SAM-dependent  
57 0.0008523 0.0526 b3281 aroE -7.63 0.189523 225 -- 232 52 -- 59 dehydroshikimate reductase NAD(P)-binding  
58 0.000878 0.0531 b2150 mglB -10.24 0.038484 153 -- 179 1 -- 24 methyl-galactoside transporter subunit  
59 0.0008996 0.0531 b1310 ycjN -10.87 0.024752 113 -- 129 42 -- 59 putative ABC sugar transporter periplasmic binding protein  
60 0.0009057 0.0531 b2740 ygbN -7.72 0.181404 16 -- 72 3 -- 58 putative transporter  
61 0.0009386 0.05413 b0574 cusB -12.39 0.007718 27 -- 84 1 -- 59 copper/silver efflux system membrane fusion protein  
62 0.001059 0.05856 b3927 glpF -11.40 0.016677 192 -- 203 48 -- 59 glycerol facilitator  
63 0.001074 0.05856 b0448 mdlA -11.87 0.011698 129 -- 162 4 -- 28 putative multidrug ABC transporter ATPase  
64 0.001083 0.05856 b3471 yhhQ -11.41 0.016564 49 -- 60 44 -- 55 DUF165 family inner membrane protein  
65 0.001093 0.05856 b1519 tam -11.83 0.011992 187 -- 231 1 -- 50 trans-aconitate methyltransferase  
66 0.001146 0.05856 b1657 ydhP -3.95 0.782289 131 -- 139 49 -- 57 putative MFS transporter inner membrane protein  
67 0.001147 0.05856 b2319 usg -10.96 0.023185 203 -- 221 18 -- 36 putative semialdehyde dehydrogenase  
68 0.001174 0.05856 b1253 yciA -8.30 0.130708 128 -- 145 3 -- 21 acyl-CoA esterase  
69 0.001182 0.05856 b2962 yggX -12.92 0.004967 226 -- 272 1 -- 57 oxidative damage protective factor for iron-sulfur proteins  
70 0.001199 0.05856 b0954 fabA -10.37 0.035200 228 -- 254 4 -- 31 beta-hydroxydecanoyl thioester dehydrase  
71 0.001214 0.05856 b1921 fliZ -11.32 0.017729 260 -- 276 48 -- 65 RpoS antagonist; putative regulator of FliA activity  
72 0.001216 0.05856 b3699 gyrB -10.53 0.031588 1 -- 17 9 -- 25 DNA gyrase subunit B  
73 0.001217 0.05856 b1702 ppsA -8.47 0.118779 124 -- 132 50 -- 58 phosphoenolpyruvate synthase  
74 0.001232 0.05856 b3139 agaC -9.25 0.073815 213 -- 219 1 -- 7 N-acetylgalactosamine-specific enzyme IIC component of PTS  
75 0.001328 0.06227 b1748 astC -8.39 0.124654 121 -- 127 1 -- 7 succinylornithine transaminase PLP-dependent  
76 0.001511 0.06993 b3465 rsmD -10.43 0.033857 227 -- 244 49 -- 65 16S rRNA m(2)G966 methyltransferase SAM-dependent  
77 0.00159 0.07263 b2159 nfo -11.23 0.018951 134 -- 154 4 -- 22 endonuclease IV with intrinsic 3'-5' exonuclease activity  
78 0.001629 0.07345 b2624 alpA -3.42 0.861549 231 -- 237 49 -- 55 CP4-57 prophage; DNA-binding transcriptional activator  
79 0.001698 0.07533 b2890 lysS -8.16 0.142186 53 -- 64 54 -- 65 lysine tRNA synthetase constitutive b4129
80 0.001713 0.07533 b1343 dbpA -13.62 0.002663 221 -- 243 1 -- 24 ATP-dependent RNA helicase specific for 23S rRNA  
81 0.001761 0.07647 b3311 rpsQ -9.62 0.058411 217 -- 225 1 -- 9 30S ribosomal subunit protein S17  
82 0.001877 0.08053 b3199 lptC -13.73 0.002422 95 -- 106 45 -- 56 periplasmic membrane-anchored LPS-binding protein; LPS export protein  
83 0.001985 0.08414 b1901 araF -10.36 0.035498 164 -- 171 1 -- 8 L-arabinose ABC transporter periplasmic binding protein  
84 0.002084 0.08729 b2067 yegE -5.99 0.414041 137 -- 150 1 -- 15 putative diguanylate cyclase  
85 0.002234 0.09158 b0118 acnB -9.43 0.065848 121 -- 128 1 -- 8 aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase  
86 0.002239 0.09158 b0434 yajG -10.16 0.040736 167 -- 223 4 -- 56 putative lipoprotein  
87 0.00233 0.09349 b2522 sseB -8.85 0.094489 280 -- 288 1 -- 9 rhodanase-like enzyme sulfur transfer from thiosulfate  
88 0.002339 0.09349 b3878 yihQ -11.00 0.022508 260 -- 267 1 -- 8 putative sulpholipid alpha-glucosidase; alpha-glucosyl fluoride glucosidase b3656
89 0.002377 0.09395 b4136 dsbD -10.47 0.032769 211 -- 231 1 -- 22 thiol:disulfide interchange protein and activator of DsbC  
90 0.002406 0.09404 b0551 quuD -13.47 0.003063 177 -- 196 40 -- 58 DLP12 prophage; putative antitermination protein  
91 0.002527 0.0977 b4393 trpR -12.48 0.007130 9 -- 21 43 -- 55 transcriptional repressor tryptophan-binding  
92 0.002567 0.09816 b4120 melB -8.04 0.151444 195 -- 202 1 -- 8 melibiose:sodium symporter  
93 0.002634 0.09947 b2202 napC -9.04 0.084220 177 -- 197 34 -- 54 quinol dehydrogenase electron source for NapAB  
94 0.002669 0.09947 b2659 csiD -13.62 0.002680 28 -- 48 1 -- 21 carbon starvation protein  
95 0.002686 0.09947 b2419 yfeK -12.78 0.005552 57 -- 65 1 -- 9 uncharacterized protein  
96 0.002764 0.1002 b1034 ycdX -5.77 0.451964 102 -- 115 32 -- 46 alkaline phosphatase  
97 0.002764 0.1002 b3935 priA -7.71 0.181779 237 -- 247 3 -- 14 Primosome factor n' (replication factor Y)  
98 0.002849 0.1023 b0772 ybhC -6.17 0.383539 27 -- 33 49 -- 55 acyl-CoA thioesterase lipoprotein  
99 0.00311 0.1096 b2801 fucP -13.12 0.004165 162 -- 172 46 -- 56 L-fucose transporter  
100 0.003115 0.1096 b0353 mhpT -8.28 0.132596 137 -- 146 48 -- 57 3-hydroxyphenylpropionic transporter  
101 0.00315 0.1097 b1822 rlmA -7.85 0.169074 182 -- 190 1 -- 9 23S rRNA m(1)G745 methyltransferase SAM-dependent  
102 0.003218 0.1101 b3816 corA -9.85 0.049984 130 -- 160 4 -- 37 magnesium/nickel/cobalt transporter  
103 0.003241 0.1101 b0837 yliI -8.40 0.123505 223 -- 230 4 -- 11 soluble aldose sugar dehydrogenase  
104 0.003257 0.1101 b0858 ybjO -8.07 0.149394 228 -- 257 2 -- 30 DUF2593 family inner membrane protein  
105 0.003348 0.1101 b2218 rcsC -11.03 0.021992 174 -- 214 1 -- 37 hybrid sensory kinase in two-component regulatory system with RcsB and YojN  
106 0.003365 0.1101 b0955 ycbZ -10.52 0.031644 269 -- 288 48 -- 66 putative peptidase  
107 0.003396 0.1101 b3871 typA -9.79 0.052081 283 -- 294 47 -- 59 GTP-binding protein  
108 0.003398 0.1101 b0973 hyaB -11.40 0.016694 267 -- 275 48 -- 56 hydrogenase 1 large subunit  
109 0.003426 0.1101 b2280 nuoJ -6.41 0.346318 31 -- 43 48 -- 59 NADH:ubiquinone oxidoreductase membrane subunit J  
110 0.003442 0.1101 b0528 ybcJ -8.36 0.126664 258 -- 272 21 -- 34 ribosome-associated protein; putative RNA-binding protein  
111 0.003555 0.1127 b2938 speA -9.18 0.077057 36 -- 48 46 -- 58 biosynthetic arginine decarboxylase PLP-binding  
112 0.003594 0.1129 b3866 yihI -3.87 0.795256 171 -- 194 53 -- 75 activator of Der GTPase  
113 0.003703 0.1147 b1728 ydjM -2.69 0.937889 161 -- 167 1 -- 7 inner membrane protein regulated by LexA  
114 0.003723 0.1147 b2327 yfcA -8.38 0.125082 22 -- 29 1 -- 8 TauE/TSUP family inner membrane protein  
115 0.00375 0.1147 b1057 yceJ -5.38 0.522888 37 -- 59 1 -- 23 putative cytochrome b561  
116 0.003844 0.1165 b1004 wrbA -12.42 0.007537 123 -- 145 10 -- 35 NAD(P)H:quinone oxidoreductase  
117 0.003878 0.1165 b3078 ygjI -10.25 0.038289 174 -- 181 1 -- 8 putative transporter b0899
118 0.003907 0.1165 b3827 yigM -8.32 0.129405 260 -- 268 1 -- 9 putative inner membrane EamA-like transporter  
119 0.003968 0.1172 b2765 queD -8.07 0.149030 164 -- 172 1 -- 9 6-pyruvoyl tetrahydrobiopterin synthase (PTPS)  
120 0.003999 0.1172 b2582 trxC -9.28 0.072721 206 -- 219 4 -- 16 thioredoxin 2  
121 0.004045 0.1176 b1738 chbB -6.64 0.311906 2 -- 15 34 -- 50 N N'-diacetylchitobiose-specific enzyme IIB component of PTS  
122 0.004081 0.1177 b3940 metL -10.48 0.032541 261 -- 280 41 -- 59 Bifunctional aspartokinase/homoserine dehydrogenase 2  
123 0.004171 0.1178 b2989 yghU -8.31 0.130595 46 -- 54 49 -- 57 putative S-transferase  
124 0.004173 0.1178 b0131 panD -9.38 0.067843 182 -- 197 22 -- 38 aspartate 1-decarboxylase  
125 0.004186 0.1178 b0781 moaA -8.90 0.091954 79 -- 99 4 -- 23 molybdopterin biosynthesis protein A  
126 0.00422 0.1178 b1621 malX -14.96 0.000732 43 -- 87 1 -- 56 maltose and glucose-specific PTS enzyme IIB component and IIC component  
127 0.004255 0.1179 b2838 lysA -9.87 0.049362 214 -- 233 52 -- 69 diaminopimelate decarboxylase PLP-binding  
128 0.004347 0.1195 b3690 cbrA -9.56 0.060736 197 -- 211 17 -- 31 colicin M resistance protein; FAD-binding protein putative oxidoreductase  
129 0.004413 0.1199 b0062 araA -8.60 0.109835 267 -- 273 1 -- 7 L-arabinose isomerase  
130 0.004431 0.1199 b3355 prkB -7.29 0.227256 214 -- 220 52 -- 58 putative phosphoribulokinase  
131 0.004483 0.1204 b2069 yegD -6.32 0.360285 213 -- 222 48 -- 57 Hsp70 chaperone family protein  
132 0.004657 0.1239 b1200 dhaK -7.52 0.201505 172 -- 179 1 -- 8 dihydroxyacetone kinase PTS-dependent dihydroxyacetone-binding subunit  
133 0.004686 0.1239 b3081 fadH -11.00 0.022420 2 -- 21 1 -- 24 2 4-dienoyl-CoA reductase NADH and FMN-linked  
134 0.004727 0.1241 b1655 mepH -9.70 0.055155 231 -- 243 1 -- 13 murein DD-endopeptidase space-maker hydrolase  
135 0.004796 0.125 b3634 coaD -9.06 0.083023 69 -- 85 49 -- 66 pantetheine-phosphate adenylyltransferase  
136 0.004892 0.1265 b2349 intS -8.19 0.139381 273 -- 281 3 -- 11 CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase  
137 0.004974 0.127 b0092 ddlB -6.99 0.263821 283 -- 297 43 -- 56 D-alanine:D-alanine ligase  
138 0.004994 0.127 b3633 waaA -9.37 0.068643 230 -- 259 48 -- 75 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)  
139 0.005017 0.127 b2603 yfiR -11.92 0.011246 223 -- 243 1 -- 19 putative periplasmic inhibitor of YfiN activity  
140 0.005114 0.1284 b3993 thiE -7.64 0.188958 243 -- 250 4 -- 11 thiamine phosphate synthase (thiamine phosphate pyrophosphorylase)  
141 0.00519 0.1284 b3550 yiaC -7.29 0.227336 55 -- 76 1 -- 22 GNAT family putative N-acetyltransferase  
142 0.005204 0.1284 b3931 hslU -6.88 0.277791 3 -- 17 52 -- 65 molecular chaperone and ATPase component of HslUV protease  
143 0.005218 0.1284 b1922 fliA -8.86 0.094137 133 -- 141 50 -- 58 RNA polymerase sigma 28 (sigma F) factor  
144 0.005273 0.1288 b1652 rnt -8.26 0.134019 203 -- 213 48 -- 58 RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair  
145 0.005462 0.1325 b3239 yhcO -10.93 0.023720 179 -- 225 2 -- 55 putative barnase inhibitor  
146 0.005604 0.1342 b1637 tyrS -10.18 0.040102 30 -- 71 2 -- 50 tyrosyl-tRNA synthetase  
147 0.005606 0.1342 b3085 ygjP -7.80 0.173342 13 -- 33 55 -- 72 putative metal dependent hydrolase  
148 0.00596 0.1406 b3426 glpD -7.81 0.172743 213 -- 222 50 -- 59 sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding  
149 0.005967 0.1406 b0472 recR -13.66 0.002580 134 -- 160 3 -- 29 gap repair protein  
150 0.00611 0.1406 b0735 ybgE -10.35 0.035619 38 -- 71 5 -- 31 putative inner membrane protein in cydABX-ybgE operon  
151 0.006118 0.1406 b1103 hinT -6.52 0.328434 216 -- 241 45 -- 70 purine nucleoside phosphoramidase dadA activator protein  
152 0.006159 0.1406 b2467 nudK -9.74 0.053801 255 -- 261 1 -- 7 GDP-mannose pyrophosphatase  
153 0.006198 0.1406 b3459 panM -8.50 0.116540 144 -- 151 50 -- 57 PanD autocleavage accelerator panothenate synthesis  
154 0.006224 0.1406 b0882 clpA -11.36 0.017252 127 -- 158 2 -- 32 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity  
155 0.00623 0.1406 b4178 nsrR -8.53 0.114937 220 -- 228 48 -- 56 nitric oxide-sensitive repressor for NO regulon  
156 0.006236 0.1406 b2922 yggE -5.46 0.507768 199 -- 207 42 -- 50 oxidative stress defense protein  
157 0.006279 0.1407 b0312 betB -8.02 0.153308 1 -- 12 52 -- 63 betaine aldehyde dehydrogenase NAD-dependent  
158 0.00634 0.1412 b3598 yibI -10.19 0.039756 289 -- 298 49 -- 58 DUF3302 family inner membrane protein b3587
159 0.006413 0.1413 b4242 mgtA -7.15 0.243258 247 -- 262 45 -- 58 magnesium transporter  
160 0.006479 0.1413 b0391 yaiE -12.00 0.010520 148 -- 162 1 -- 15 UPF0345 family protein  
161 0.006501 0.1413 b2682 ygaZ -8.47 0.118892 208 -- 214 1 -- 7 putative L-valine exporter norvaline resistance protein  
162 0.006534 0.1413 b3771 ilvD -6.87 0.280008 44 -- 51 49 -- 56 dihydroxyacid dehydratase  
163 0.006545 0.1413 b0532 sfmD -7.71 0.181786 104 -- 132 48 -- 76 putative outer membrane export usher protein b3144 b4317 b0940
164 0.006623 0.1421 b2278 nuoL -8.77 0.099276 203 -- 221 5 -- 24 NADH:ubiquinone oxidoreductase membrane subunit L  
165 0.006672 0.1423 b1651 gloA -7.94 0.160716 101 -- 108 49 -- 56 glyoxalase I Ni-dependent  
166 0.006804 0.1439 b0475 hemH -7.56 0.197603 220 -- 228 1 -- 9 ferrochelatase  
167 0.00683 0.1439 b0387 yaiI -9.54 0.061403 53 -- 70 51 -- 65 UPF0178 family protein  
168 0.006917 0.1448 b3070 yqjH -8.25 0.134865 172 -- 181 49 -- 58 putative siderophore interacting protein  
169 0.006985 0.1454 b0384 psiF -5.27 0.543574 221 -- 228 1 -- 8 PsiF family protein  
170 0.007042 0.1457 b3110 yhaO -10.02 0.044877 174 -- 180 1 -- 7 putative transporter  
171 0.00718 0.1466 b1708 nlpC -9.44 0.065343 288 -- 298 49 -- 59 putative C40 clan peptidase lipoprotein  
172 0.007198 0.1466 b2395 yfeA -7.88 0.166321 272 -- 292 49 -- 69 putative diguanylate cyclase  
173 0.007216 0.1466 b3650 spoT -5.39 0.520602 11 -- 17 54 -- 60 bifunctional (p)ppGpp synthetase II/ guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase  
174 0.007262 0.1466 b0473 htpG -8.02 0.153160 10 -- 17 50 -- 57 protein refolding molecular co-chaperone Hsp90 Hsp70-dependent; heat-shock protein; ATPase  
175 0.007291 0.1466 b1498 ydeN -8.19 0.139530 95 -- 124 45 -- 67 putative Ser-type periplasmic non-aryl sulfatase b3678 b3801
176 0.007357 0.147 b2905 gcvT -7.40 0.214118 198 -- 224 6 -- 30 aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex  
177 0.007672 0.1511 b2307 hisM -10.48 0.032509 175 -- 237 1 -- 57 histidine ABC transporter permease  
178 0.007695 0.1511 b4567 yjjZ -7.25 0.231371 185 -- 218 2 -- 33 uncharacterized protein  
179 0.007709 0.1511 b4111 proP -8.76 0.100034 225 -- 232 49 -- 56 proline/glycine betaine transporter  
180 0.007734 0.1511 b3617 kbl -7.53 0.200168 193 -- 210 43 -- 60 glycine C-acetyltransferase  
181 0.007802 0.1516 b1797 yeaR -7.07 0.254063 142 -- 149 2 -- 9 DUF1971 family protein nitrate-inducible  
182 0.007896 0.1519 b0686 ybfF -7.34 0.221050 164 -- 170 2 -- 8 acyl-CoA esterase  
183 0.007903 0.1519 b2725 hycA -8.51 0.115738 229 -- 236 49 -- 56 regulator of the transcriptional regulator FhlA  
184 0.00812 0.1553 b4371 rsmC -7.50 0.203534 191 -- 216 4 -- 25 16S rRNA m(2)G1207 methyltransferase SAM-dependent  
185 0.008247 0.1556 b4195 ulaC -8.57 0.111851 181 -- 191 40 -- 50 L-ascorbate-specific enzyme IIA component of PTS  
186 0.008252 0.1556 b2026 hisI -8.65 0.106637 17 -- 26 42 -- 51 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase  
187 0.008276 0.1556 b0827 moeA -6.51 0.330510 82 -- 91 23 -- 32 molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein  
188 0.008316 0.1556 b3406 greB -8.11 0.146040 42 -- 55 52 -- 65 transcript cleavage factor  
189 0.008373 0.1558 b1559 quuQ -11.90 0.011421 197 -- 219 1 -- 24 Qin prophage; putative antitermination protein Q  
190 0.008456 0.1558 b0036 caiD -8.40 0.123663 110 -- 117 1 -- 8 carnitinyl-CoA dehydratase  
191 0.008587 0.1558 b0823 ybiW -9.49 0.063221 47 -- 54 1 -- 8 putative pyruvate formate lyase b3951
192 0.008619 0.1558 b2561 yfhH -12.96 0.004772 194 -- 222 4 -- 32 putative DNA-binding transcriptional regulator  
193 0.008653 0.1558 b1677 lpp -9.16 0.078007 273 -- 298 53 -- 76 murein lipoprotein  
194 0.008663 0.1558 b0213 yafS -5.39 0.521143 17 -- 34 51 -- 73 putative S-adenosyl-L-methionine-dependent methyltransferase  
195 0.008707 0.1558 b3318 rplW -7.58 0.194751 202 -- 213 43 -- 55 50S ribosomal subunit protein L23  
196 0.008709 0.1558 b2498 upp -7.14 0.244299 249 -- 259 45 -- 56 uracil phosphoribosyltransferase  
197 0.00873 0.1558 b2324 mnmC -9.11 0.080832 111 -- 120 52 -- 61 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  
198 0.008802 0.1558 b1905 ftnA -8.07 0.149574 234 -- 260 3 -- 24 ferritin iron storage protein (cytoplasmic)  
199 0.008811 0.1558 b4515 cydX -11.13 0.020449 151 -- 184 5 -- 31 cytochrome d (bd-I) ubiquinol oxidase subunit X  
200 0.009019 0.1567 b3343 tusB -6.18 0.382258 145 -- 152 1 -- 8 mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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