91 |
0.002527 |
0.0977 |
b4393 |
trpR |
-12.48 |
0.007130 |
9 -- 21 |
43 -- 55 |
transcriptional repressor tryptophan-binding |
|
_____________8_____________22\n_____________|_____________|\n___5'-GAGACGCG_____________AACGU...AUC-3'\n______________CGGUUAUGUGAAG\n______________||:|||:||||||\n______________GCUAAUGCACUUC\n3'-AUU...UUUAG_____________AUUUU...AUG-5'\n_____________|_____________|\n_____________56____________42\n |
15 -- 21 |
43 -- 49 |
-16.824 kcal/mol |
1.08541 kcal/mol |
3.2693 kcal/mol |
8 22@LB@ | |@LB@ 5'-GAGACGCG AACGU...AUC-3'@LB@ CGGUUAUGUGAAG@LB@ ||:|||:||||||@LB@ GCUAAUGCACUUC@LB@3'-AUU...UUUAG AUUUU...AUG-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -16.824 kcal/mol@LB@Unfolding Energy - mRNA 1.08541 kcal/mol@LB@Unfolding Energy - sRNA 3.2693 kcal/mol@LB@@LB@Position - mRNA 9 -- 21@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 43 -- 49@LB@ |
92 |
0.002567 |
0.09816 |
b4120 |
melB |
-8.04 |
0.151444 |
195 -- 202 |
1 -- 8 |
melibiose:sodium symporter |
|
_____________194______203\n_____________|________|\n5'-AUA...CCCGA________GAGCA...ACA-3'\n______________UACCCUAU\n______________|||||||:\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
196 -- 202 |
1 -- 7 |
-10.9179 kcal/mol |
0.779946 kcal/mol |
2.11603 kcal/mol |
194 203@LB@ | |@LB@5'-AUA...CCCGA GAGCA...ACA-3'@LB@ UACCCUAU@LB@ |||||||:@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.04 kcal/mol@LB@Hybridization Energy -10.9179 kcal/mol@LB@Unfolding Energy - mRNA 0.779946 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 195 -- 202@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 1 -- 7@LB@ |
93 |
0.002634 |
0.09947 |
b2202 |
napC |
-9.04 |
0.084220 |
177 -- 197 |
34 -- 54 |
quinol dehydrogenase electron source for NapAB |
|
_____________176___________________198\n_____________|_____________________|\n5'-ACG...CAAAA_______G___A_________AUUAU...GUU-3'\n______________GGUUACG_GAA_UAAGAGGUU\n______________|:|||||_|||_|||:||||:\n______________CUAAUGC_CUU_AUUUUCCAG\n3'-AUU...UUAGG_______A___C_________ACUUU...AUG-5'\n_____________|_____________________|\n_____________55____________________33\n |
177 -- 183 |
48 -- 54 |
-21.2793 kcal/mol |
4.43682 kcal/mol |
7.71857 kcal/mol |
176 198@LB@ | |@LB@5'-ACG...CAAAA G A AUUAU...GUU-3'@LB@ GGUUACG GAA UAAGAGGUU@LB@ |:||||| ||| |||:||||:@LB@ CUAAUGC CUU AUUUUCCAG@LB@3'-AUU...UUAGG A C ACUUU...AUG-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -21.2793 kcal/mol@LB@Unfolding Energy - mRNA 4.43682 kcal/mol@LB@Unfolding Energy - sRNA 7.71857 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
94 |
0.002669 |
0.09947 |
b2659 |
csiD |
-13.62 |
0.002680 |
28 -- 48 |
1 -- 21 |
carbon starvation protein |
|
_____________27____________________49\n_____________|_____________________|\n5'-GUU...UGUCU__C________AA________GUUAA...UGG-3'\n______________CA_UUUGCCUU__UACCCUAC\n______________||_:||:|||:__||||||||\n______________GU_GAAUGGAG__AUGGGAUG\n3'-AUU...AUCUU__A________AC________-5'\n_____________|____________________|\n_____________22___________________1\n |
42 -- 48 |
1 -- 7 |
-22.7197 kcal/mol |
1.13457 kcal/mol |
7.99195 kcal/mol |
27 49@LB@ | |@LB@5'-GUU...UGUCU C AA GUUAA...UGG-3'@LB@ CA UUUGCCUU UACCCUAC@LB@ || :||:|||: ||||||||@LB@ GU GAAUGGAG AUGGGAUG@LB@3'-AUU...AUCUU A AC -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -22.7197 kcal/mol@LB@Unfolding Energy - mRNA 1.13457 kcal/mol@LB@Unfolding Energy - sRNA 7.99195 kcal/mol@LB@@LB@Position - mRNA 28 -- 48@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 1 -- 7@LB@ |
95 |
0.002686 |
0.09947 |
b2419 |
yfeK |
-12.78 |
0.005552 |
57 -- 65 |
1 -- 9 |
uncharacterized protein |
|
_____________56________66\n_____________|_________|\n5'-GUU...CUGCA_________UCUUA...UGG-3'\n______________GUGCCCUAC\n______________||:||||||\n______________CAUGGGAUG\n3'-AUU...GGAGA_________-5'\n_____________|________|\n_____________10_______1\n |
59 -- 65 |
1 -- 7 |
-16.152 kcal/mol |
1.26264 kcal/mol |
2.12872 kcal/mol |
56 66@LB@ | |@LB@5'-GUU...CUGCA UCUUA...UGG-3'@LB@ GUGCCCUAC@LB@ ||:||||||@LB@ CAUGGGAUG@LB@3'-AUU...GGAGA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -16.152 kcal/mol@LB@Unfolding Energy - mRNA 1.26264 kcal/mol@LB@Unfolding Energy - sRNA 2.12872 kcal/mol@LB@@LB@Position - mRNA 57 -- 65@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 1 -- 7@LB@ |
96 |
0.002764 |
0.1002 |
b1034 |
ycdX |
-5.77 |
0.451964 |
102 -- 115 |
32 -- 46 |
alkaline phosphatase |
|
_____________101_____________116\n_____________|_______________|\n5'-GGC...AAAAA_______________CGGGC...AAC-3'\n______________GGGG_AGAGGGUCUG\n______________|::|_|:|:||||||\n______________CUUC_UUUUCCAGAC\n3'-AUU...AUGCA____A__________UUUCU...AUG-5'\n_____________|_______________|\n_____________47______________31\n |
109 -- 115 |
32 -- 38 |
-16.8058 kcal/mol |
3.54072 kcal/mol |
7.24668 kcal/mol |
101 116@LB@ | |@LB@5'-GGC...AAAAA CGGGC...AAC-3'@LB@ GGGG AGAGGGUCUG@LB@ |::| |:|:||||||@LB@ CUUC UUUUCCAGAC@LB@3'-AUU...AUGCA A UUUCU...AUG-5'@LB@ | |@LB@ 47 31@LB@@LB@@LB@Energy -5.77 kcal/mol@LB@Hybridization Energy -16.8058 kcal/mol@LB@Unfolding Energy - mRNA 3.54072 kcal/mol@LB@Unfolding Energy - sRNA 7.24668 kcal/mol@LB@@LB@Position - mRNA 102 -- 115@LB@Position - sRNA 32 -- 46@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 32 -- 38@LB@ |
97 |
0.002764 |
0.1002 |
b3935 |
priA |
-7.71 |
0.181779 |
237 -- 247 |
3 -- 14 |
Primosome factor n' (replication factor Y) |
|
_____________236__________248\n_____________|____________|\n5'-GAA...CGCUU____________UGACU...GCG-3'\n______________CCUC_GUACCUU\n______________||||_|||||:|\n______________GGAG_CAUGGGA\n3'-AUU...AGAAU____A_______UG-5'\n_____________|____________|\n_____________15___________2\n |
241 -- 247 |
3 -- 9 |
-14.2439 kcal/mol |
1.19768 kcal/mol |
5.35591 kcal/mol |
236 248@LB@ | |@LB@5'-GAA...CGCUU UGACU...GCG-3'@LB@ CCUC GUACCUU@LB@ |||| |||||:|@LB@ GGAG CAUGGGA@LB@3'-AUU...AGAAU A UG-5'@LB@ | |@LB@ 15 2@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -14.2439 kcal/mol@LB@Unfolding Energy - mRNA 1.19768 kcal/mol@LB@Unfolding Energy - sRNA 5.35591 kcal/mol@LB@@LB@Position - mRNA 237 -- 247@LB@Position - sRNA 3 -- 14@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 3 -- 9@LB@ |
98 |
0.002849 |
0.1023 |
b0772 |
ybhC |
-6.17 |
0.383539 |
27 -- 33 |
49 -- 55 |
acyl-CoA thioesterase lipoprotein |
|
_____________26______34\n_____________|_______|\n5'-UCA...CGCCU_______UGCGA...AUC-3'\n______________CGAUUAC\n______________|||||||\n______________GCUAAUG\n3'-AUU...UUUAG_______CACUU...AUG-5'\n_____________|_______|\n_____________56______48\n |
27 -- 33 |
49 -- 55 |
-7.86935 kcal/mol |
1.39337 kcal/mol |
0.311712 kcal/mol |
26 34@LB@ | |@LB@5'-UCA...CGCCU UGCGA...AUC-3'@LB@ CGAUUAC@LB@ |||||||@LB@ GCUAAUG@LB@3'-AUU...UUUAG CACUU...AUG-5'@LB@ | |@LB@ 56 48@LB@@LB@@LB@Energy -6.17 kcal/mol@LB@Hybridization Energy -7.86935 kcal/mol@LB@Unfolding Energy - mRNA 1.39337 kcal/mol@LB@Unfolding Energy - sRNA 0.311712 kcal/mol@LB@@LB@Position - mRNA 27 -- 33@LB@Position - sRNA 49 -- 55@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 49 -- 55@LB@ |
99 |
0.00311 |
0.1096 |
b2801 |
fucP |
-13.12 |
0.004165 |
162 -- 172 |
46 -- 56 |
L-fucose transporter |
|
_____________161_________173\n_____________|___________|\n5'-AUG...CAUAA___________CUUAA...CAC-3'\n______________CCGAUUACGUG\n______________|||||||||||\n______________GGCUAAUGCAC\n3'-AUU...GUUUA___________UUCAU...AUG-5'\n_____________|___________|\n_____________57__________45\n |
166 -- 172 |
46 -- 52 |
-17.4041 kcal/mol |
2.44124 kcal/mol |
1.86194 kcal/mol |
161 173@LB@ | |@LB@5'-AUG...CAUAA CUUAA...CAC-3'@LB@ CCGAUUACGUG@LB@ |||||||||||@LB@ GGCUAAUGCAC@LB@3'-AUU...GUUUA UUCAU...AUG-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -17.4041 kcal/mol@LB@Unfolding Energy - mRNA 2.44124 kcal/mol@LB@Unfolding Energy - sRNA 1.86194 kcal/mol@LB@@LB@Position - mRNA 162 -- 172@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 46 -- 52@LB@ |
100 |
0.003115 |
0.1096 |
b0353 |
mhpT |
-8.28 |
0.132596 |
137 -- 146 |
48 -- 57 |
3-hydroxyphenylpropionic transporter |
|
_____________136________147\n_____________|__________|\n5'-CGG...AUAGU__________CGGCU...CGG-3'\n______________UCUGAUUACG\n______________||:|||||||\n______________AGGCUAAUGC\n3'-AUU...GGUUU__________ACUUC...AUG-5'\n_____________|__________|\n_____________58_________47\n |
140 -- 146 |
48 -- 54 |
-13.4725 kcal/mol |
3.61374 kcal/mol |
1.55976 kcal/mol |
136 147@LB@ | |@LB@5'-CGG...AUAGU CGGCU...CGG-3'@LB@ UCUGAUUACG@LB@ ||:|||||||@LB@ AGGCUAAUGC@LB@3'-AUU...GGUUU ACUUC...AUG-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -8.28 kcal/mol@LB@Hybridization Energy -13.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.61374 kcal/mol@LB@Unfolding Energy - sRNA 1.55976 kcal/mol@LB@@LB@Position - mRNA 137 -- 146@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 48 -- 54@LB@ |