Freiburg RNA Tools
CopraRNA - Results
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CopraRNA 6327975

Input and runtime details for job 6327975 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 6327975 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:30:39 CET 2014
?Processing Started@ Mon Oct 27 19:30:51 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 21:49:55 CET 2014
?Post-Processing Finished@ Mon Oct 27 21:49:55 CET 2014
?Job Completed@ Mon Oct 27 21:50:05 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6327975&toolName=CopraRNA ( 30 days expiry )

The job description you specified

DsrA

Output download complete results [zip]

Downloadable files

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[txt]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 0 0 b1955 yedP -1.66 0.946449 183 -- 192 36 -- 45 putative mannosyl-3-phosphoglycerate phosphatase   2
2 4.504e-09 8.199e-06 b2741 rpoS -18.50 0.000000 75 -- 104 10 -- 40 RNA polymerase sigma S (sigma 38) factor   0
3 9.991e-07 0.001213 b1237 hns -12.58 0.001430 207 -- 222 26 -- 43 global DNA-binding transcriptional dual regulator H-NS   0
4 6.674e-05 0.06075 b2105 rcnR -7.73 0.075814 12 -- 26 36 -- 49 transcriptional repressor of rcnA   1
5 0.0002254 0.1355 b0889 lrp -9.81 0.016543 189 -- 221 37 -- 60 leucine-responsive global transcriptional regulator   0
6 0.0002584 0.1355 b3749 rbsA -10.68 0.008091 71 -- 86 17 -- 32 fused D-ribose transporter subunits of ABC superfamily: ATP-binding components   0
7 0.0002739 0.1355 b0491 fetB -9.64 0.018867 187 -- 197 37 -- 47 iron exporter permease subunit ABC transporter FetAB; peroxide resistance protein   0
8 0.0002976 0.1355 b0476 aes -7.83 0.070888 2 -- 45 10 -- 53 acetyl esterase   0
9 0.0005856 0.2369 b2792 yqcC -12.83 0.001112 10 -- 25 38 -- 53 DUF446 family protein   0
10 0.0008838 0.3218 b0405 queA -9.72 0.017684 73 -- 106 26 -- 60 S-adenosylmethionine:tRNA ribosyltransferase-isomerase   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1